Wall clock time and date at job start Tue Mar 31 2020 22:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 120.00033 * 2 1 4 4 O 1.21281 * 120.00187 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00233 * 359.97438 * 3 2 1 6 6 C 1.52994 * 109.47353 * 180.02562 * 5 3 2 7 7 H 1.09003 * 110.76744 * 303.25098 * 6 5 3 8 8 C 1.55141 * 110.70670 * 180.02562 * 6 5 3 9 9 C 1.54905 * 101.65148 * 205.96272 * 8 6 5 10 10 N 1.47836 * 104.80025 * 37.07000 * 9 8 6 11 11 C 1.46901 * 111.00391 * 213.63693 * 10 9 8 12 12 C 1.47448 * 108.56370 * 335.90470 * 10 9 8 13 13 C 1.46497 * 119.99490 * 180.02562 * 2 1 3 14 14 C 1.53932 * 113.73782 * 38.76847 * 13 2 1 15 15 N 1.48191 * 86.09891 * 221.95287 * 14 13 2 16 16 C 1.46899 * 111.06796 * 137.51989 * 15 14 13 17 17 C 1.50706 * 109.47272 * 90.56885 * 16 15 14 18 18 O 1.21284 * 119.99752 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99852 * 180.02562 * 17 16 15 20 20 C 1.37103 * 119.99950 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99744 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00081 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00062 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99842 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47291 * 89.99660 * 24 22 20 26 26 H 1.48502 * 109.46774 * 210.00126 * 24 22 20 27 27 H 1.48498 * 109.46880 * 329.99663 * 24 22 20 28 28 C 1.47959 * 90.80143 * 24.59959 * 15 14 13 29 29 H 1.08999 * 109.47076 * 89.99835 * 1 2 3 30 30 H 1.09001 * 109.47463 * 209.99910 * 1 2 3 31 31 H 1.08995 * 109.47589 * 330.00078 * 1 2 3 32 32 H 1.09007 * 109.46833 * 59.99960 * 5 3 2 33 33 H 1.09006 * 109.47115 * 300.00199 * 5 3 2 34 34 H 1.09000 * 110.99218 * 324.05476 * 8 6 5 35 35 H 1.09004 * 110.99166 * 87.86922 * 8 6 5 36 36 H 1.09002 * 110.37707 * 278.23400 * 9 8 6 37 37 H 1.09009 * 110.37539 * 155.89827 * 9 8 6 38 38 H 1.09002 * 109.47401 * 180.83948 * 11 10 9 39 39 H 1.09001 * 109.46874 * 60.83961 * 11 10 9 40 40 H 1.09004 * 109.46970 * 300.84094 * 11 10 9 41 41 H 1.09001 * 109.88743 * 120.39857 * 12 10 9 42 42 H 1.09003 * 109.88565 * 241.58095 * 12 10 9 43 43 H 1.09002 * 112.93353 * 170.33501 * 13 2 1 44 44 H 1.08993 * 113.76000 * 336.23602 * 14 13 2 45 45 H 1.09005 * 113.76177 * 107.60192 * 14 13 2 46 46 H 1.09004 * 109.47298 * 210.56450 * 16 15 14 47 47 H 1.09001 * 109.47644 * 330.56340 * 16 15 14 48 48 H 0.96999 * 120.00665 * 359.97438 * 19 17 16 49 49 H 0.97003 * 119.99950 * 180.02562 * 23 22 20 50 50 H 1.08994 * 113.75947 * 221.08470 * 28 15 14 51 51 H 1.09002 * 113.76190 * 89.71295 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6351 -0.0011 7 1 3.0555 3.5661 0.8513 8 6 1.6331 4.9951 -0.0011 9 6 2.6780 5.9256 -0.6657 10 7 3.3208 5.0914 -1.7032 11 6 4.7367 5.4485 -1.8634 12 6 3.1730 3.6742 -1.3241 13 6 2.1974 -1.2688 -0.0006 14 6 1.5557 -2.3543 -0.8834 15 7 1.8637 -3.2922 0.2218 16 6 0.7406 -4.2068 0.4667 17 6 0.9101 -5.4467 -0.3730 18 8 1.8716 -5.5573 -1.1040 19 7 -0.0074 -6.4321 -0.3125 20 6 0.1465 -7.5599 -1.0768 21 1 1.0027 -7.6584 -1.7277 22 6 -0.7991 -8.5761 -1.0140 23 7 -1.8411 -8.4560 -0.2225 24 14 -0.5890 -10.1130 -2.0549 25 1 0.1856 -11.1250 -1.2928 26 1 -1.9243 -10.6658 -2.3965 27 1 0.1386 -9.7697 -3.3031 28 6 1.8623 -2.1782 1.1954 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 0.7584 2.5302 0.8892 33 1 0.7590 2.5298 -0.8909 34 1 0.7227 4.9409 -0.5981 35 1 1.4123 5.3194 1.0160 36 1 3.4147 6.2540 0.0675 37 1 2.1857 6.7850 -1.1211 38 1 5.1816 4.8300 -2.6429 39 1 5.2621 5.2816 -0.9231 40 1 4.8170 6.4990 -2.1431 41 1 2.6268 3.1378 -2.1000 42 1 4.1554 3.2243 -1.1807 43 1 3.2668 -1.1418 -0.1690 44 1 0.4886 -2.2093 -1.0518 45 1 2.1083 -2.5579 -1.8006 46 1 0.7196 -4.4823 1.5212 47 1 -0.1944 -3.7134 0.2015 48 1 -0.7766 -6.3436 0.2718 49 1 -2.5010 -9.1656 -0.1784 50 1 2.6595 -2.2412 1.9360 51 1 0.8851 -1.9814 1.6364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483886738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:19 Heat of formation + Delta-G solvation = -47.512612 kcal Electronic energy + Delta-G solvation = -29311.731152 eV Core-core repulsion = 25246.312822 eV Total energy + Delta-G solvation = -4065.418330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84382 -40.68589 -39.76960 -39.14717 -36.12249 -35.81951 -34.29778 -33.29605 -31.59866 -30.68908 -28.43382 -28.00288 -27.28822 -27.02171 -26.08920 -24.76057 -22.03122 -21.91399 -21.05566 -20.73088 -19.99962 -19.75766 -18.25559 -17.80782 -17.64707 -17.20823 -16.87329 -16.56293 -16.30844 -16.20074 -15.87987 -15.65264 -15.17396 -15.12601 -14.82538 -14.38761 -14.20508 -14.06883 -13.96362 -13.70282 -13.69380 -13.52906 -13.50091 -13.11356 -13.02434 -12.80980 -12.69830 -12.53747 -12.42790 -12.27377 -12.15763 -12.12884 -12.10507 -11.84431 -11.72923 -11.58279 -11.50535 -10.77735 -10.38978 -10.00946 -9.71611 -9.66618 -9.31590 -8.46923 -5.95337 1.37345 1.41155 1.53536 1.61566 1.88783 2.06048 2.28986 2.78377 3.08799 3.19339 3.32193 3.43354 3.51398 3.68414 3.70971 3.80829 3.95868 4.10061 4.18246 4.25833 4.30047 4.35330 4.39536 4.40271 4.45393 4.49455 4.51953 4.54361 4.60647 4.67119 4.72174 4.75846 4.82279 4.86481 4.93381 4.96974 4.97721 5.01187 5.12412 5.16145 5.33289 5.37962 5.40610 5.45393 5.85762 5.98514 6.06021 6.08940 6.40121 6.61217 7.13538 7.17613 7.56884 8.14057 8.70368 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.001723 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.693462 B =16242.736214 C =16475.749247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.605 5.605 3 C 0.507 3.493 4 O -0.583 6.583 5 C -0.118 4.118 6 C -0.091 4.091 7 H 0.066 0.934 8 C -0.115 4.115 9 C 0.035 3.965 10 N -0.551 5.551 11 C 0.020 3.980 12 C 0.053 3.947 13 C 0.128 3.872 14 C 0.004 3.996 15 N -0.484 5.484 16 C 0.028 3.972 17 C 0.440 3.560 18 O -0.621 6.621 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.268 1.268 27 H -0.275 1.275 28 C 0.002 3.998 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.023 0.977 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.110 0.890 47 H 0.089 0.911 48 H 0.397 0.603 49 H 0.278 0.722 50 H 0.094 0.906 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 29.940 4.991 30.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.337 5.337 3 C 0.297 3.703 4 O -0.462 6.462 5 C -0.158 4.158 6 C -0.111 4.111 7 H 0.084 0.916 8 C -0.153 4.153 9 C -0.092 4.092 10 N -0.275 5.275 11 C -0.129 4.129 12 C -0.075 4.075 13 C 0.022 3.978 14 C -0.126 4.126 15 N -0.207 5.207 16 C -0.103 4.103 17 C 0.227 3.773 18 O -0.507 6.507 19 N -0.212 5.212 20 C -0.464 4.464 21 H 0.093 0.907 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.200 1.200 28 C -0.127 4.127 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.119 0.881 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.128 0.872 47 H 0.106 0.894 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.112 0.888 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.058 29.382 4.008 29.654 hybrid contribution -0.173 -1.109 0.423 1.200 sum -0.116 28.273 4.431 28.619 Atomic orbital electron populations 1.22151 0.77026 1.05234 1.03469 1.48012 1.08324 1.04670 1.72725 1.21476 0.87845 0.86512 0.74467 1.90690 1.16210 1.87984 1.51345 1.21767 0.98547 0.88601 1.06875 1.22095 0.96657 0.94956 0.97385 0.91575 1.22787 0.98189 0.92090 1.02219 1.23169 0.96629 0.97033 0.92399 1.63608 1.15004 1.03602 1.45299 1.22538 0.87949 1.02283 1.00083 1.22772 0.99503 0.89006 0.96189 1.22695 0.97662 0.81800 0.95618 1.24436 1.01012 0.90700 0.96440 1.68290 1.37764 1.09812 1.04839 1.22331 0.94613 0.92750 1.00631 1.20847 0.83830 0.86271 0.86327 1.90498 1.33549 1.81754 1.44927 1.41921 1.23090 1.16162 1.40017 1.19630 1.08896 0.95939 1.21943 0.90701 1.25983 0.94706 1.01800 0.98577 1.69656 1.11961 1.35678 1.38639 0.84962 0.77940 0.77482 0.78148 1.19752 1.19296 1.20029 1.24483 1.03413 0.88768 0.96042 0.91329 0.90403 0.87426 0.85413 0.86537 0.89106 0.88746 0.93570 0.89159 0.92015 0.95885 0.90123 0.91789 0.94487 0.88122 0.88891 0.91415 0.87216 0.89365 0.76903 0.91278 0.88795 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 8.83 127.77 1.13 1.73 16 2 N -0.61 -10.88 3.09 -826.88 -2.56 -13.44 16 3 C 0.51 10.09 7.46 87.66 0.65 10.75 16 4 O -0.58 -17.04 14.33 -3.03 -0.04 -17.09 16 5 C -0.12 -1.28 3.65 29.85 0.11 -1.17 16 6 C -0.09 -1.28 2.54 -9.62 -0.02 -1.31 16 7 H 0.07 1.17 8.05 -2.39 -0.02 1.15 16 8 C -0.12 -1.02 6.52 31.98 0.21 -0.81 16 9 C 0.03 0.42 6.73 86.77 0.58 1.01 16 10 N -0.55 -9.55 5.44 -911.69 -4.96 -14.52 16 11 C 0.02 0.32 9.12 127.69 1.16 1.48 16 12 C 0.05 1.03 5.49 86.64 0.48 1.50 16 13 C 0.13 3.13 4.39 46.56 0.20 3.33 16 14 C 0.00 0.10 7.41 86.36 0.64 0.74 16 15 N -0.48 -15.71 5.65 -912.25 -5.15 -20.86 16 16 C 0.03 0.95 5.28 85.56 0.45 1.40 16 17 C 0.44 21.19 7.83 87.66 0.69 21.87 16 18 O -0.62 -35.82 16.01 -3.04 -0.05 -35.87 16 19 N -0.57 -29.43 5.29 -306.98 -1.62 -31.05 16 20 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 21 H 0.07 4.63 7.16 -2.91 -0.02 4.60 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 23 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 24 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 28 C 0.00 0.05 7.47 86.41 0.65 0.70 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.73 6.35 -2.39 -0.02 0.71 16 31 H 0.11 0.36 6.44 -2.39 -0.02 0.34 16 32 H 0.13 0.61 7.40 -2.38 -0.02 0.59 16 33 H 0.12 0.88 8.03 -2.38 -0.02 0.87 16 34 H 0.09 0.63 8.05 -2.39 -0.02 0.61 16 35 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.05 0.55 7.78 -2.39 -0.02 0.53 16 37 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.02 0.37 8.10 -2.39 -0.02 0.35 16 40 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.06 1.32 7.77 -2.39 -0.02 1.30 16 42 H 0.04 0.91 7.11 -2.39 -0.02 0.90 16 43 H 0.10 3.06 7.22 -2.39 -0.02 3.04 16 44 H 0.09 2.21 6.17 -2.39 -0.01 2.20 16 45 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 46 H 0.11 3.19 8.08 -2.39 -0.02 3.17 16 47 H 0.09 2.37 7.39 -2.39 -0.02 2.36 16 48 H 0.40 19.00 7.90 -92.71 -0.73 18.26 16 49 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 50 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.10 1.72 6.62 -2.39 -0.02 1.70 16 Total: -1.00 -78.30 402.56 -3.67 -81.98 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.20 Total: 31.70 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 8.21 Total: 22.76 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -14.01 Total: -128.64 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -0.09 Total: -52.96 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -78.30 -3.67 -81.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483886738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.464 kcal (2) G-P(sol) polarization free energy of solvation -78.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds