Wall clock time and date at job start Tue Mar 31 2020 22:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.47843 * 110.99484 * 2 1 4 4 C 1.54910 * 104.79543 * 146.36868 * 3 2 1 5 5 C 1.55147 * 101.64949 * 322.92871 * 4 3 2 6 6 H 1.09005 * 110.85356 * 277.19975 * 5 4 3 7 7 C 1.50696 * 110.70435 * 154.03764 * 5 4 3 8 8 O 1.21278 * 120.00338 * 4.94699 * 7 5 4 9 9 N 1.34778 * 119.99946 * 184.94276 * 7 5 4 10 10 C 1.46497 * 120.00269 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47571 * 180.02562 * 10 9 7 12 12 N 1.46886 * 109.47407 * 180.02562 * 11 10 9 13 13 C 1.46902 * 111.00260 * 190.00321 * 12 11 10 14 14 C 1.50699 * 109.47419 * 71.94575 * 13 12 11 15 15 O 1.21295 * 119.99655 * 5.58532 * 14 13 12 16 16 N 1.34765 * 120.00242 * 185.58759 * 14 13 12 17 17 C 1.37105 * 120.00091 * 180.02562 * 16 14 13 18 18 H 1.07994 * 119.99921 * 359.97438 * 17 16 14 19 19 C 1.38947 * 120.00198 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99802 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00207 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46983 * 90.00130 * 21 19 17 23 23 H 1.48504 * 109.47398 * 210.00398 * 21 19 17 24 24 H 1.48500 * 109.46889 * 330.00113 * 21 19 17 25 25 C 1.46902 * 111.00306 * 66.04668 * 12 11 10 26 26 C 1.52998 * 117.50459 * 185.38894 * 25 12 11 27 27 C 1.53006 * 60.03247 * 252.47902 * 26 25 12 28 28 C 1.47442 * 110.99993 * 120.84498 * 2 1 3 29 29 H 1.08999 * 109.46708 * 299.15584 * 1 2 3 30 30 H 1.08996 * 109.46887 * 59.15643 * 1 2 3 31 31 H 1.09004 * 109.46700 * 179.15995 * 1 2 3 32 32 H 1.09003 * 110.37382 * 265.19043 * 3 2 1 33 33 H 1.08993 * 110.37949 * 27.53558 * 3 2 1 34 34 H 1.09001 * 110.99348 * 204.84024 * 4 3 2 35 35 H 1.08998 * 110.99056 * 81.01788 * 4 3 2 36 36 H 0.97006 * 119.99805 * 0.02562 * 9 7 5 37 37 H 1.09004 * 109.46965 * 60.00900 * 10 9 7 38 38 H 1.08999 * 109.47618 * 300.00914 * 10 9 7 39 39 H 1.09004 * 109.46409 * 60.00353 * 11 10 9 40 40 H 1.09005 * 109.46845 * 300.00939 * 11 10 9 41 41 H 1.09004 * 109.47453 * 191.95023 * 13 12 11 42 42 H 1.08999 * 109.46583 * 311.94539 * 13 12 11 43 43 H 0.96998 * 120.00368 * 359.97438 * 16 14 13 44 44 H 0.97001 * 119.99977 * 179.97438 * 20 19 17 45 45 H 1.08998 * 115.54559 * 331.06687 * 25 12 11 46 46 H 1.09005 * 117.49445 * 359.97438 * 26 25 12 47 47 H 1.09000 * 117.49987 * 144.97622 * 26 25 12 48 48 H 1.08993 * 117.49872 * 107.50248 * 27 26 25 49 49 H 1.08997 * 117.49614 * 252.51880 * 27 26 25 50 50 H 1.08999 * 109.88859 * 117.34209 * 28 2 1 51 51 H 1.08991 * 110.02561 * 356.22283 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3048 1.3028 0.8295 5 6 2.9160 0.2822 1.9314 6 1 2.3754 0.7724 2.7411 7 6 4.1385 -0.4230 2.4598 8 8 5.2414 -0.0916 2.0797 9 7 4.0061 -1.4218 3.3549 10 6 5.1944 -2.1078 3.8682 11 6 4.7690 -3.1915 4.8609 12 7 5.9606 -3.8788 5.3760 13 6 5.5880 -5.0741 6.1445 14 6 5.0937 -6.1425 5.2036 15 8 5.1501 -5.9680 4.0046 16 7 4.5890 -7.2917 5.6943 17 6 4.1398 -8.2638 4.8382 18 1 4.1901 -8.1085 3.7707 19 6 3.6199 -9.4489 5.3441 20 7 3.5583 -9.6377 6.6431 21 14 3.0072 -10.7732 4.1778 22 1 4.1232 -11.6949 3.8454 23 1 1.9114 -11.5366 4.8272 24 1 2.5001 -10.1409 2.9335 25 6 6.7850 -2.9697 6.1833 26 6 8.1292 -3.4966 6.6897 27 6 6.9660 -3.3069 7.6655 28 6 1.9975 -0.7057 1.1818 29 1 -0.3633 0.5007 0.8975 30 1 -0.3633 0.5269 -0.8823 31 1 -0.3633 -1.0276 -0.0151 32 1 2.2147 1.7039 -1.0182 33 1 1.2890 2.0592 0.4723 34 1 3.5495 2.2721 1.2640 35 1 4.1302 0.9283 0.2241 36 1 3.1238 -1.6871 3.6587 37 1 5.8408 -1.3880 4.3706 38 1 5.7356 -2.5660 3.0404 39 1 4.1229 -3.9112 4.3581 40 1 4.2276 -2.7336 5.6888 41 1 6.4581 -5.4426 6.6878 42 1 4.7989 -4.8196 6.8520 43 1 4.5442 -7.4314 6.6531 44 1 3.1950 -10.4648 6.9963 45 1 6.7280 -1.9160 5.9103 46 1 8.4016 -4.5181 6.4241 47 1 8.9567 -2.7897 6.7494 48 1 6.4734 -4.2034 8.0418 49 1 7.0282 -2.4749 8.3669 50 1 2.5699 -1.5784 0.8673 51 1 1.1773 -1.0142 1.8299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493446006.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:04 Heat of formation + Delta-G solvation = -25.432722 kcal Electronic energy + Delta-G solvation = -29519.530864 eV Core-core repulsion = 25455.069989 eV Total energy + Delta-G solvation = -4064.460875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.39667 -39.34927 -38.32099 -37.50068 -35.35447 -34.03290 -33.22024 -32.46645 -31.27292 -30.03193 -28.83365 -26.57330 -25.96978 -24.33764 -23.19807 -22.30793 -22.10205 -21.31877 -20.36542 -20.10526 -18.86991 -17.86637 -17.54755 -16.80611 -16.52318 -16.20678 -15.61642 -15.37461 -15.22754 -14.77256 -14.51582 -14.36653 -14.07952 -14.00516 -13.78569 -13.74412 -13.48042 -13.12537 -12.85886 -12.56104 -12.44173 -12.18846 -12.00144 -11.94386 -11.61148 -11.54002 -11.51001 -11.37717 -11.30357 -11.15298 -11.12046 -10.98758 -10.63891 -10.41093 -10.28417 -10.23711 -9.89815 -9.50938 -9.07504 -8.68840 -8.42770 -7.98961 -7.85710 -6.43915 -3.84760 2.53050 2.96566 3.16397 3.25332 3.30870 3.63632 3.76897 3.87910 4.02077 4.12203 4.21729 4.33968 4.59032 4.79232 4.88897 4.94018 4.95348 4.96413 4.98079 5.03509 5.05117 5.12927 5.17904 5.22957 5.25799 5.32063 5.52123 5.54430 5.56087 5.62404 5.63727 5.69428 5.71685 5.74369 5.93963 5.95661 5.99891 6.11330 6.15709 6.20269 6.24604 6.37558 6.55910 6.67880 7.12405 7.26778 7.40658 7.53273 8.03908 8.13168 8.59313 9.16138 9.51906 10.03672 10.73809 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008730 B = 0.002718 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.417597 B =10300.006955 C =13051.987268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.532 5.532 3 C 0.040 3.960 4 C -0.108 4.108 5 C -0.133 4.133 6 H 0.101 0.899 7 C 0.525 3.475 8 O -0.537 6.537 9 N -0.725 5.725 10 C 0.126 3.874 11 C 0.051 3.949 12 N -0.477 5.477 13 C 0.043 3.957 14 C 0.441 3.559 15 O -0.574 6.574 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.019 3.981 26 C -0.170 4.170 27 C -0.224 4.224 28 C 0.051 3.949 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.400 0.600 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.033 0.967 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.119 0.881 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 20.750 -1.748 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.256 5.256 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.156 4.156 6 H 0.119 0.881 7 C 0.310 3.690 8 O -0.413 6.413 9 N -0.377 5.377 10 C 0.002 3.998 11 C -0.078 4.078 12 N -0.199 5.199 13 C -0.088 4.088 14 C 0.226 3.774 15 O -0.457 6.457 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.091 4.091 26 C -0.208 4.208 27 C -0.263 4.263 28 C -0.078 4.078 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.052 0.948 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.117 0.883 47 H 0.114 0.886 48 H 0.119 0.881 49 H 0.109 0.891 50 H 0.105 0.895 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.468 20.501 -3.610 20.962 hybrid contribution -1.533 -0.413 1.897 2.474 sum -4.001 20.087 -1.713 20.553 Atomic orbital electron populations 1.22580 0.87350 1.02441 1.00643 1.63574 1.08148 1.14496 1.39431 1.23127 0.95448 0.89258 1.00959 1.22602 0.98067 0.98385 0.95564 1.22603 0.95502 0.97905 0.99554 0.88092 1.20224 0.90498 0.79741 0.78510 1.90709 1.27352 1.64985 1.58235 1.45943 1.10562 1.36245 1.44951 1.21321 0.86870 0.93527 0.98063 1.22226 0.92429 0.96402 0.96697 1.61223 1.18806 1.04705 1.35147 1.21995 1.00569 0.91046 0.95157 1.19745 0.84366 0.84024 0.89255 1.90536 1.59802 1.79947 1.15445 1.41869 1.54468 1.14278 1.09564 1.19689 1.36780 0.94483 0.91794 0.87908 1.25253 0.97667 0.98616 0.96389 1.69611 1.46304 1.27227 1.11232 0.85870 0.78353 0.80272 0.79883 1.20382 1.20957 1.19396 1.22787 0.98074 0.96632 0.91588 1.23060 0.91794 1.03190 1.02779 1.23628 1.04574 1.04089 0.93970 1.22846 0.97437 0.97046 0.90432 0.95408 0.91233 0.91044 0.89731 0.93399 0.90296 0.89057 0.76662 0.91821 0.89995 0.88410 0.94845 0.88830 0.93018 0.77563 0.91881 0.86370 0.88277 0.88614 0.88074 0.89057 0.89535 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.12 60.07 0.55 0.68 16 2 N -0.53 -4.98 5.44 -239.52 -1.30 -6.28 16 3 C 0.04 0.32 6.73 -2.30 -0.02 0.30 16 4 C -0.11 -0.99 6.13 -24.59 -0.15 -1.14 16 5 C -0.13 -1.22 3.34 -89.95 -0.30 -1.52 16 6 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 7 C 0.53 6.53 7.02 -10.99 -0.08 6.45 16 8 O -0.54 -8.77 15.76 5.56 0.09 -8.69 16 9 N -0.73 -8.32 5.50 -60.30 -0.33 -8.66 16 10 C 0.13 1.72 5.66 -4.04 -0.02 1.70 16 11 C 0.05 0.73 4.71 -3.83 -0.02 0.71 16 12 N -0.48 -7.61 4.31 -228.04 -0.98 -8.59 16 13 C 0.04 0.74 4.10 -4.98 -0.02 0.72 16 14 C 0.44 10.09 7.30 -10.99 -0.08 10.01 16 15 O -0.57 -15.10 14.77 5.54 0.08 -15.02 16 16 N -0.56 -13.95 5.29 -10.97 -0.06 -14.00 16 17 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 21 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.02 0.24 5.81 -67.67 -0.39 -0.15 16 26 C -0.17 -2.05 9.95 -26.73 -0.27 -2.32 16 27 C -0.22 -2.54 9.54 -26.69 -0.25 -2.79 16 28 C 0.05 0.47 6.42 -2.83 -0.02 0.45 16 29 H 0.03 0.18 8.10 -51.93 -0.42 -0.24 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.32 7.78 -51.93 -0.40 -0.08 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.04 7.49 -51.93 -0.39 0.65 16 36 H 0.40 3.62 8.46 -40.82 -0.35 3.28 16 37 H 0.06 0.84 6.42 -51.93 -0.33 0.51 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.10 1.69 6.54 -51.93 -0.34 1.35 16 40 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 41 H 0.09 1.51 5.81 -51.93 -0.30 1.20 16 42 H 0.05 0.80 7.87 -51.93 -0.41 0.40 16 43 H 0.39 9.26 7.90 -40.82 -0.32 8.93 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.12 1.38 6.35 -51.93 -0.33 1.05 16 46 H 0.10 1.33 7.65 -51.93 -0.40 0.93 16 47 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.10 1.20 5.95 -51.93 -0.31 0.89 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.09 0.97 7.81 -51.93 -0.41 0.56 16 51 H 0.06 0.49 7.59 -51.93 -0.39 0.10 16 LS Contribution 406.45 15.07 6.13 6.13 Total: -1.00 -32.83 406.45 -10.41 -43.24 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -8.42 Total: 14.24 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.31 Total: 5.31 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -1.95 Total: -61.00 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.17 Total: -23.71 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.83 -10.41 -43.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493446006.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.806 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds