Wall clock time and date at job start Tue Mar 31 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.47843 * 110.99484 * 2 1 4 4 C 1.54910 * 104.79543 * 146.36868 * 3 2 1 5 5 C 1.55147 * 101.64949 * 322.92871 * 4 3 2 6 6 H 1.09005 * 110.85356 * 277.19975 * 5 4 3 7 7 C 1.50696 * 110.70435 * 154.03764 * 5 4 3 8 8 O 1.21278 * 120.00338 * 4.94699 * 7 5 4 9 9 N 1.34778 * 119.99946 * 184.94276 * 7 5 4 10 10 C 1.46497 * 120.00269 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47571 * 180.02562 * 10 9 7 12 12 N 1.46886 * 109.47407 * 180.02562 * 11 10 9 13 13 C 1.46902 * 111.00260 * 190.00321 * 12 11 10 14 14 C 1.50699 * 109.47419 * 71.94575 * 13 12 11 15 15 O 1.21295 * 119.99655 * 5.58532 * 14 13 12 16 16 N 1.34765 * 120.00242 * 185.58759 * 14 13 12 17 17 C 1.37105 * 120.00091 * 180.02562 * 16 14 13 18 18 H 1.07994 * 119.99921 * 359.97438 * 17 16 14 19 19 C 1.38947 * 120.00198 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99802 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00207 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46983 * 90.00130 * 21 19 17 23 23 H 1.48504 * 109.47398 * 210.00398 * 21 19 17 24 24 H 1.48500 * 109.46889 * 330.00113 * 21 19 17 25 25 C 1.46902 * 111.00306 * 66.04668 * 12 11 10 26 26 C 1.52998 * 117.50459 * 185.38894 * 25 12 11 27 27 C 1.53006 * 60.03247 * 252.47902 * 26 25 12 28 28 C 1.47442 * 110.99993 * 120.84498 * 2 1 3 29 29 H 1.08999 * 109.46708 * 299.15584 * 1 2 3 30 30 H 1.08996 * 109.46887 * 59.15643 * 1 2 3 31 31 H 1.09004 * 109.46700 * 179.15995 * 1 2 3 32 32 H 1.09003 * 110.37382 * 265.19043 * 3 2 1 33 33 H 1.08993 * 110.37949 * 27.53558 * 3 2 1 34 34 H 1.09001 * 110.99348 * 204.84024 * 4 3 2 35 35 H 1.08998 * 110.99056 * 81.01788 * 4 3 2 36 36 H 0.97006 * 119.99805 * 0.02562 * 9 7 5 37 37 H 1.09004 * 109.46965 * 60.00900 * 10 9 7 38 38 H 1.08999 * 109.47618 * 300.00914 * 10 9 7 39 39 H 1.09004 * 109.46409 * 60.00353 * 11 10 9 40 40 H 1.09005 * 109.46845 * 300.00939 * 11 10 9 41 41 H 1.09004 * 109.47453 * 191.95023 * 13 12 11 42 42 H 1.08999 * 109.46583 * 311.94539 * 13 12 11 43 43 H 0.96998 * 120.00368 * 359.97438 * 16 14 13 44 44 H 0.97001 * 119.99977 * 179.97438 * 20 19 17 45 45 H 1.08998 * 115.54559 * 331.06687 * 25 12 11 46 46 H 1.09005 * 117.49445 * 359.97438 * 26 25 12 47 47 H 1.09000 * 117.49987 * 144.97622 * 26 25 12 48 48 H 1.08993 * 117.49872 * 107.50248 * 27 26 25 49 49 H 1.08997 * 117.49614 * 252.51880 * 27 26 25 50 50 H 1.08999 * 109.88859 * 117.34209 * 28 2 1 51 51 H 1.08991 * 110.02561 * 356.22283 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3048 1.3028 0.8295 5 6 2.9160 0.2822 1.9314 6 1 2.3754 0.7724 2.7411 7 6 4.1385 -0.4230 2.4598 8 8 5.2414 -0.0916 2.0797 9 7 4.0061 -1.4218 3.3549 10 6 5.1944 -2.1078 3.8682 11 6 4.7690 -3.1915 4.8609 12 7 5.9606 -3.8788 5.3760 13 6 5.5880 -5.0741 6.1445 14 6 5.0937 -6.1425 5.2036 15 8 5.1501 -5.9680 4.0046 16 7 4.5890 -7.2917 5.6943 17 6 4.1398 -8.2638 4.8382 18 1 4.1901 -8.1085 3.7707 19 6 3.6199 -9.4489 5.3441 20 7 3.5583 -9.6377 6.6431 21 14 3.0072 -10.7732 4.1778 22 1 4.1232 -11.6949 3.8454 23 1 1.9114 -11.5366 4.8272 24 1 2.5001 -10.1409 2.9335 25 6 6.7850 -2.9697 6.1833 26 6 8.1292 -3.4966 6.6897 27 6 6.9660 -3.3069 7.6655 28 6 1.9975 -0.7057 1.1818 29 1 -0.3633 0.5007 0.8975 30 1 -0.3633 0.5269 -0.8823 31 1 -0.3633 -1.0276 -0.0151 32 1 2.2147 1.7039 -1.0182 33 1 1.2890 2.0592 0.4723 34 1 3.5495 2.2721 1.2640 35 1 4.1302 0.9283 0.2241 36 1 3.1238 -1.6871 3.6587 37 1 5.8408 -1.3880 4.3706 38 1 5.7356 -2.5660 3.0404 39 1 4.1229 -3.9112 4.3581 40 1 4.2276 -2.7336 5.6888 41 1 6.4581 -5.4426 6.6878 42 1 4.7989 -4.8196 6.8520 43 1 4.5442 -7.4314 6.6531 44 1 3.1950 -10.4648 6.9963 45 1 6.7280 -1.9160 5.9103 46 1 8.4016 -4.5181 6.4241 47 1 8.9567 -2.7897 6.7494 48 1 6.4734 -4.2034 8.0418 49 1 7.0282 -2.4749 8.3669 50 1 2.5699 -1.5784 0.8673 51 1 1.1773 -1.0142 1.8299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493446006.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:03 Heat of formation + Delta-G solvation = -51.620209 kcal Electronic energy + Delta-G solvation = -29520.666439 eV Core-core repulsion = 25455.069989 eV Total energy + Delta-G solvation = -4065.596449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34259 -40.70571 -39.28381 -38.98286 -36.45232 -35.94391 -34.42055 -33.30159 -33.18489 -31.05669 -29.85018 -27.92671 -26.77251 -26.05388 -24.21082 -23.24542 -23.06513 -21.99671 -21.72673 -21.12031 -20.42690 -19.72409 -18.53248 -18.17579 -17.43330 -17.22819 -16.85371 -16.60930 -16.46162 -16.14057 -15.80008 -15.60613 -15.58610 -15.10728 -14.89607 -14.53963 -14.43469 -14.39175 -14.22499 -13.66779 -13.54479 -13.45832 -13.26271 -12.98069 -12.90246 -12.62656 -12.54309 -12.41910 -12.37314 -12.28416 -12.20124 -12.17879 -12.11741 -11.84691 -11.70993 -11.47815 -11.23275 -10.94060 -10.27083 -10.15666 -9.99705 -9.33117 -9.06545 -8.46242 -5.94500 1.37525 1.41728 1.53457 1.53864 1.95779 2.05573 2.28768 2.68826 2.99086 3.00180 3.20555 3.37217 3.42521 3.59447 3.70552 3.86482 3.94477 4.02611 4.09429 4.17128 4.20512 4.28029 4.29399 4.31965 4.35280 4.45328 4.48087 4.51390 4.53325 4.65699 4.81204 4.82838 4.84449 4.92554 4.95343 4.97339 4.99723 5.06930 5.10077 5.19522 5.28273 5.34576 5.41613 5.83193 5.91052 6.05447 6.07664 6.15795 6.46349 6.61252 7.13961 7.16124 7.57148 8.13275 8.71127 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008730 B = 0.002718 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.417597 B =10300.006955 C =13051.987268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.556 5.556 3 C 0.045 3.955 4 C -0.109 4.109 5 C -0.123 4.123 6 H 0.134 0.866 7 C 0.522 3.478 8 O -0.581 6.581 9 N -0.716 5.716 10 C 0.139 3.861 11 C 0.060 3.940 12 N -0.503 5.503 13 C 0.060 3.940 14 C 0.440 3.560 15 O -0.613 6.613 16 N -0.574 5.574 17 C -0.329 4.329 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.007 3.993 26 C -0.175 4.175 27 C -0.205 4.205 28 C 0.053 3.947 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.413 0.587 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.133 0.867 46 H 0.080 0.920 47 H 0.116 0.884 48 H 0.096 0.904 49 H 0.115 0.885 50 H 0.057 0.943 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 22.199 -0.212 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.280 5.280 3 C -0.082 4.082 4 C -0.147 4.147 5 C -0.145 4.145 6 H 0.151 0.849 7 C 0.309 3.691 8 O -0.460 6.460 9 N -0.368 5.368 10 C 0.014 3.986 11 C -0.068 4.068 12 N -0.225 5.225 13 C -0.071 4.071 14 C 0.227 3.773 15 O -0.499 6.499 16 N -0.212 5.212 17 C -0.459 4.459 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.561 5.561 21 Si 0.813 3.187 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.102 4.102 26 C -0.213 4.213 27 C -0.244 4.244 28 C -0.075 4.075 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.093 0.907 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.151 0.849 46 H 0.099 0.901 47 H 0.134 0.866 48 H 0.115 0.885 49 H 0.134 0.866 50 H 0.076 0.924 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.732 21.952 -2.038 22.360 hybrid contribution -1.098 -0.835 1.386 1.955 sum -4.829 21.117 -0.652 21.672 Atomic orbital electron populations 1.22610 0.86020 1.02620 1.01705 1.63517 1.09550 1.15379 1.39587 1.23119 0.95012 0.89002 1.01060 1.22582 0.97824 0.98854 0.95475 1.22616 0.93965 0.97593 1.00309 0.84858 1.20853 0.90994 0.79430 0.77783 1.90689 1.29331 1.66368 1.59637 1.45861 1.10655 1.35655 1.44626 1.21038 0.87536 0.93432 0.96566 1.22077 0.91859 0.95552 0.97311 1.61117 1.19739 1.05338 1.36348 1.21803 1.01499 0.89937 0.93867 1.20771 0.82544 0.84323 0.89640 1.90511 1.60887 1.80758 1.17718 1.41921 1.55153 1.14653 1.09438 1.19615 1.38884 0.96197 0.91214 0.90454 1.25983 0.97226 0.99962 0.97975 1.69666 1.46315 1.27931 1.12221 0.84977 0.78154 0.77650 0.77874 1.19890 1.19468 1.19776 1.22869 0.98089 0.96599 0.92649 1.23126 0.92394 1.02678 1.03107 1.23662 1.03047 1.04554 0.93139 1.22761 0.97721 0.96185 0.90842 0.94003 0.90456 0.91364 0.89630 0.91246 0.88900 0.92080 0.75047 0.90862 0.93824 0.91766 0.91966 0.87489 0.90692 0.77065 0.91334 0.84918 0.90130 0.86624 0.88518 0.86625 0.92416 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.12 127.69 1.16 1.40 16 2 N -0.56 -9.76 5.44 -911.69 -4.96 -14.72 16 3 C 0.05 0.65 6.73 86.77 0.58 1.23 16 4 C -0.11 -1.91 6.13 31.98 0.20 -1.72 16 5 C -0.12 -2.09 3.34 -10.36 -0.03 -2.13 16 6 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 7 C 0.52 12.97 7.02 87.66 0.62 13.59 16 8 O -0.58 -19.57 15.76 -3.02 -0.05 -19.62 16 9 N -0.72 -16.25 5.50 -463.07 -2.55 -18.80 16 10 C 0.14 3.84 5.66 86.38 0.49 4.33 16 11 C 0.06 1.72 4.71 86.31 0.41 2.13 16 12 N -0.50 -15.80 4.31 -875.38 -3.77 -19.57 16 13 C 0.06 2.01 4.10 85.56 0.35 2.37 16 14 C 0.44 20.60 7.30 87.66 0.64 21.24 16 15 O -0.61 -33.65 14.77 -3.07 -0.05 -33.69 16 16 N -0.57 -28.97 5.29 -307.00 -1.62 -30.60 16 17 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 20 N -0.92 -49.10 13.05 21.66 0.28 -48.81 16 21 Si 0.99 42.75 29.55 68.60 2.03 44.77 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C 0.01 0.16 5.81 44.94 0.26 0.42 16 26 C -0.18 -3.90 9.95 30.60 0.30 -3.59 16 27 C -0.21 -4.04 9.54 30.62 0.29 -3.75 16 28 C 0.05 0.94 6.42 86.65 0.56 1.50 16 29 H 0.04 0.42 8.10 -2.39 -0.02 0.40 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 0.72 7.78 -2.39 -0.02 0.70 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.45 7.49 -2.39 -0.02 1.43 16 36 H 0.41 7.09 8.46 -92.70 -0.78 6.30 16 37 H 0.07 1.90 6.42 -2.38 -0.02 1.88 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 2.29 6.54 -2.38 -0.02 2.27 16 40 H 0.06 1.42 8.12 -2.38 -0.02 1.40 16 41 H 0.11 3.33 5.81 -2.38 -0.01 3.32 16 42 H 0.08 2.19 7.87 -2.39 -0.02 2.17 16 43 H 0.40 18.93 7.90 -92.71 -0.73 18.19 16 44 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 45 H 0.13 2.77 6.35 -2.39 -0.02 2.76 16 46 H 0.08 2.10 7.65 -2.38 -0.02 2.09 16 47 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.10 2.02 5.95 -2.39 -0.01 2.00 16 49 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.06 1.34 7.81 -2.39 -0.02 1.32 16 51 H 0.08 1.13 7.59 -2.39 -0.02 1.12 16 Total: -1.00 -73.94 406.45 -4.15 -78.09 By element: Atomic # 1 Polarization: 44.37 SS G_CDS: -0.57 Total: 43.80 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 7.11 Total: 19.15 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -12.62 Total: -132.50 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.09 Total: -53.32 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -73.94 -4.15 -78.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493446006.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.469 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds