Wall clock time and date at job start Tue Mar 31 2020 22:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46000 * 118.53799 * 2 1 4 4 C 1.52982 * 110.05030 * 161.83340 * 3 2 1 5 5 N 1.47195 * 108.72865 * 50.27186 * 4 3 2 6 6 C 1.46896 * 110.99997 * 54.37118 * 5 4 3 7 7 C 1.50696 * 109.47354 * 66.20981 * 6 5 4 8 8 O 1.21274 * 119.99918 * 6.13330 * 7 6 5 9 9 N 1.34775 * 119.99914 * 186.12948 * 7 6 5 10 10 C 1.46506 * 119.99878 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.43464 * 36.09061 * 10 9 7 12 12 C 1.54268 * 110.48663 * 273.54944 * 10 9 7 13 13 C 1.53879 * 106.59494 * 217.71345 * 12 10 9 14 14 C 1.54261 * 106.60074 * 359.97438 * 13 12 10 15 15 C 1.54887 * 104.19699 * 23.61111 * 14 13 12 16 16 H 1.09001 * 110.75408 * 80.37169 * 15 14 13 17 17 C 1.53000 * 110.75941 * 203.74209 * 15 14 13 18 18 N 1.46500 * 109.47217 * 288.33425 * 17 15 14 19 19 C 1.36936 * 119.99891 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00212 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99809 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00017 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00161 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46807 * 89.99831 * 23 21 19 25 25 H 1.48501 * 109.47457 * 209.99627 * 23 21 19 26 26 H 1.48500 * 109.47049 * 330.00076 * 23 21 19 27 27 C 1.46904 * 110.17431 * 291.00173 * 5 4 3 28 28 C 1.33713 * 118.53271 * 179.97438 * 2 1 3 29 29 O 1.21289 * 118.62687 * 1.70713 * 28 2 1 30 30 H 1.08994 * 109.47383 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46687 * 300.05039 * 1 2 3 32 32 H 1.09004 * 109.46894 * 60.04145 * 1 2 3 33 33 H 1.08996 * 109.38825 * 41.64198 * 3 2 1 34 34 H 1.09001 * 109.35763 * 281.99838 * 3 2 1 35 35 H 1.08994 * 109.59564 * 290.50145 * 4 3 2 36 36 H 1.08998 * 109.59702 * 170.04329 * 4 3 2 37 37 H 1.09001 * 109.47263 * 186.21733 * 6 5 4 38 38 H 1.09004 * 109.46926 * 306.20714 * 6 5 4 39 39 H 0.97001 * 120.00553 * 0.02562 * 9 7 6 40 40 H 1.08998 * 110.03065 * 336.99102 * 12 10 9 41 41 H 1.08995 * 110.03540 * 98.37603 * 12 10 9 42 42 H 1.08998 * 110.03243 * 119.28671 * 13 12 10 43 43 H 1.08996 * 110.02771 * 240.66292 * 13 12 10 44 44 H 1.09000 * 110.48894 * 142.29237 * 14 13 12 45 45 H 1.09002 * 110.48442 * 264.80046 * 14 13 12 46 46 H 1.09006 * 109.46874 * 48.32860 * 17 15 14 47 47 H 1.08993 * 109.47434 * 168.32969 * 17 15 14 48 48 H 0.96999 * 119.99664 * 359.97438 * 18 17 15 49 49 H 0.97000 * 120.00050 * 180.02562 * 22 21 19 50 50 H 1.08994 * 109.38911 * 170.45387 * 27 5 4 51 51 H 1.08995 * 109.38806 * 290.25247 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1626 1.2826 0.0000 4 6 3.6127 1.0910 0.4481 5 7 4.2095 -0.0018 -0.3370 6 6 4.0677 0.2467 -1.7778 7 6 4.8887 1.4501 -2.1632 8 8 5.6153 1.9753 -1.3465 9 7 4.8156 1.9427 -3.4156 10 6 5.6142 3.1123 -3.7905 11 1 6.5836 3.0867 -3.2927 12 6 4.8625 4.4136 -3.4420 13 6 5.1581 5.4094 -4.5773 14 6 6.0795 4.6788 -5.5756 15 6 5.7935 3.1769 -5.3274 16 1 4.8800 2.8685 -5.8358 17 6 6.9795 2.3184 -5.7718 18 7 7.0505 2.3035 -7.2350 19 6 8.0380 1.5945 -7.8653 20 1 8.7647 1.0467 -7.2838 21 6 8.1050 1.5800 -9.2517 22 7 7.2190 2.2472 -9.9604 23 14 9.4525 0.6135 -10.1117 24 1 8.9818 -0.7715 -10.3677 25 1 9.7859 1.2693 -11.4017 26 1 10.6608 0.5743 -9.2494 27 6 3.6018 -1.2855 0.0383 28 6 2.1038 -1.1747 0.0005 29 8 1.4464 -2.1936 -0.0307 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5146 0.8895 32 1 -0.3633 0.5132 -0.8904 33 1 1.6604 1.9676 0.6832 34 1 2.1474 1.7021 -1.0059 35 1 3.6373 0.8358 1.5074 36 1 4.1723 2.0109 0.2783 37 1 4.4165 -0.6242 -2.3328 38 1 3.0195 0.4314 -2.0132 39 1 4.2342 1.5228 -4.0688 40 1 3.7912 4.2216 -3.3833 41 1 5.2230 4.8103 -2.4930 42 1 4.2302 5.7008 -5.0694 43 1 5.6619 6.2903 -4.1794 44 1 5.8248 4.9514 -6.5998 45 1 7.1247 4.9094 -5.3692 46 1 7.9018 2.7357 -5.3675 47 1 6.8493 1.3007 -5.4039 48 1 6.3975 2.7952 -7.7572 49 1 7.2656 2.2368 -10.9292 50 1 3.9251 -2.0569 -0.6607 51 1 3.9181 -1.5548 1.0459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496893658.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:51 Heat of formation + Delta-G solvation = -44.260497 kcal Electronic energy + Delta-G solvation = -30246.839631 eV Core-core repulsion = 26181.562322 eV Total energy + Delta-G solvation = -4065.277308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36628 -39.92307 -38.30152 -37.22244 -35.41923 -34.47867 -33.64434 -31.42708 -30.44520 -29.94729 -28.62122 -27.88249 -26.75932 -25.06565 -24.49618 -23.11246 -22.14234 -20.98309 -20.26380 -19.65551 -18.93177 -17.65253 -17.26635 -17.19001 -16.68553 -16.55106 -16.46356 -15.77470 -15.25850 -15.01785 -14.65809 -14.45373 -14.15819 -13.92857 -13.70534 -13.67859 -13.32345 -13.22513 -13.13591 -12.91513 -12.81641 -12.56910 -12.31887 -12.16485 -12.03608 -11.90363 -11.55049 -11.29155 -11.00527 -10.91590 -10.82596 -10.76083 -10.49180 -10.35788 -10.28092 -10.01115 -9.83983 -9.70332 -9.25336 -8.99983 -8.88061 -8.70730 -6.92978 -5.77948 -3.06223 2.14150 2.42571 2.55948 2.87867 3.43025 3.48583 3.50046 3.57898 3.96059 4.36207 4.42250 4.45307 4.55526 4.67479 4.73994 4.79525 4.83418 4.85819 4.96705 4.99438 5.03519 5.07497 5.20053 5.26190 5.41763 5.42699 5.51978 5.53288 5.59981 5.61081 5.72001 5.78154 5.82868 5.89576 6.03002 6.14672 6.21502 6.26408 6.27755 6.34164 6.46306 6.52726 6.57298 6.75636 6.88374 6.89649 7.48226 7.65937 7.69670 8.19131 8.41239 9.52616 10.10153 10.45006 11.44961 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013589 B = 0.002429 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.958860 B =11526.758092 C =12634.502989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.611 5.611 3 C 0.073 3.927 4 C 0.033 3.967 5 N -0.504 5.504 6 C 0.022 3.978 7 C 0.516 3.484 8 O -0.523 6.523 9 N -0.719 5.719 10 C 0.149 3.851 11 H 0.095 0.905 12 C -0.130 4.130 13 C -0.123 4.123 14 C -0.111 4.111 15 C -0.102 4.102 16 H 0.080 0.920 17 C 0.162 3.838 18 N -0.731 5.731 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.042 3.958 28 C 0.483 3.517 29 O -0.549 6.549 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.401 0.599 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.020 0.980 47 H 0.018 0.982 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.117 0.883 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 1.638 21.861 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.345 5.345 3 C -0.051 4.051 4 C -0.095 4.095 5 N -0.227 5.227 6 C -0.109 4.109 7 C 0.301 3.699 8 O -0.399 6.399 9 N -0.370 5.370 10 C 0.044 3.956 11 H 0.113 0.887 12 C -0.169 4.169 13 C -0.161 4.161 14 C -0.149 4.149 15 C -0.121 4.121 16 H 0.098 0.902 17 C 0.034 3.966 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.089 4.089 28 C 0.270 3.730 29 O -0.426 6.426 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.235 0.765 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.038 0.962 47 H 0.036 0.964 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.135 0.865 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.667 1.358 22.524 25.877 hybrid contribution -0.759 -0.439 -1.330 1.593 sum -13.426 0.919 21.194 25.106 Atomic orbital electron populations 1.21766 0.79410 1.04610 1.01415 1.47429 1.07592 1.06131 1.73331 1.22205 0.95021 0.85243 1.02677 1.22769 0.90649 0.97467 0.98612 1.62203 1.55298 1.01697 1.03470 1.22228 0.99484 0.99069 0.90163 1.20247 0.82783 0.84476 0.82369 1.90679 1.39156 1.60222 1.49841 1.46068 1.46583 1.32043 1.12346 1.21898 0.94807 0.83490 0.95446 0.88726 1.22495 1.00126 0.95396 0.98904 1.22122 0.99873 0.97988 0.96145 1.22286 0.99730 0.93470 0.99436 1.22550 1.00281 0.96551 0.92728 0.90181 1.20640 0.93805 0.95630 0.86513 1.42328 1.35365 1.60321 0.99489 1.19229 1.05551 1.22636 0.89505 0.91257 1.24726 0.99119 1.00891 0.96263 1.69655 1.37129 1.46194 1.05343 0.86199 0.81502 0.79453 0.79111 1.21747 1.21778 1.20754 1.22557 0.86965 0.93561 1.05790 1.21417 0.92582 0.83088 0.75912 1.90721 1.67514 1.34400 1.49933 0.89094 0.92107 0.92129 0.89733 0.91297 0.89391 0.86463 0.87059 0.91467 0.76512 0.91942 0.91595 0.91994 0.91970 0.90791 0.91165 0.96186 0.96448 0.78301 0.93550 0.86535 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 10.55 59.85 0.63 1.12 16 2 N -0.61 -4.88 3.06 -182.48 -0.56 -5.44 16 3 C 0.07 0.46 5.68 -4.32 -0.02 0.43 16 4 C 0.03 0.24 5.62 -3.67 -0.02 0.22 16 5 N -0.50 -4.39 4.73 -237.55 -1.12 -5.51 16 6 C 0.02 0.19 4.86 -4.98 -0.02 0.16 16 7 C 0.52 5.78 7.47 -10.99 -0.08 5.69 16 8 O -0.52 -7.51 14.34 5.56 0.08 -7.43 16 9 N -0.72 -7.75 5.11 -52.21 -0.27 -8.02 16 10 C 0.15 1.86 2.60 -66.28 -0.17 1.69 16 11 H 0.09 1.38 7.57 -51.93 -0.39 0.99 16 12 C -0.13 -1.43 6.53 -25.61 -0.17 -1.59 16 13 C -0.12 -1.38 6.80 -25.61 -0.17 -1.56 16 14 C -0.11 -1.57 6.20 -25.08 -0.16 -1.73 16 15 C -0.10 -1.50 2.50 -88.64 -0.22 -1.72 16 16 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 17 C 0.16 3.13 5.70 -4.04 -0.02 3.11 16 18 N -0.73 -17.95 5.52 -59.91 -0.33 -18.28 16 19 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 23 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.04 0.34 5.88 -5.19 -0.03 0.30 16 28 C 0.48 4.79 7.04 -11.67 -0.08 4.70 16 29 O -0.55 -7.44 16.07 5.55 0.09 -7.35 16 30 H 0.09 0.79 6.67 -51.93 -0.35 0.44 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 34 H 0.07 0.44 6.74 -51.93 -0.35 0.09 16 35 H 0.09 0.57 8.08 -51.93 -0.42 0.15 16 36 H 0.12 1.04 6.25 -51.93 -0.32 0.71 16 37 H 0.11 0.89 7.91 -51.93 -0.41 0.48 16 38 H 0.07 0.51 5.67 -51.93 -0.29 0.22 16 39 H 0.40 3.69 8.53 -40.82 -0.35 3.34 16 40 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 46 H 0.02 0.41 7.99 -51.93 -0.41 -0.01 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.38 9.83 7.67 -40.82 -0.31 9.51 16 49 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.12 0.87 7.88 -51.93 -0.41 0.46 16 51 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 400.05 15.07 6.03 6.03 Total: -1.00 -34.33 400.05 -9.79 -44.12 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -8.62 Total: 8.14 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.79 Total: 3.59 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -1.56 Total: -64.43 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.17 Total: -14.78 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.33 -9.79 -44.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496893658.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.140 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds