Wall clock time and date at job start Tue Mar 31 2020 22:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46000 * 118.53799 * 2 1 4 4 C 1.52982 * 110.05030 * 161.83340 * 3 2 1 5 5 N 1.47195 * 108.72865 * 50.27186 * 4 3 2 6 6 C 1.46896 * 110.99997 * 54.37118 * 5 4 3 7 7 C 1.50696 * 109.47354 * 66.20981 * 6 5 4 8 8 O 1.21274 * 119.99918 * 6.13330 * 7 6 5 9 9 N 1.34775 * 119.99914 * 186.12948 * 7 6 5 10 10 C 1.46506 * 119.99878 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.43464 * 36.09061 * 10 9 7 12 12 C 1.54268 * 110.48663 * 273.54944 * 10 9 7 13 13 C 1.53879 * 106.59494 * 217.71345 * 12 10 9 14 14 C 1.54261 * 106.60074 * 359.97438 * 13 12 10 15 15 C 1.54887 * 104.19699 * 23.61111 * 14 13 12 16 16 H 1.09001 * 110.75408 * 80.37169 * 15 14 13 17 17 C 1.53000 * 110.75941 * 203.74209 * 15 14 13 18 18 N 1.46500 * 109.47217 * 288.33425 * 17 15 14 19 19 C 1.36936 * 119.99891 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00212 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99809 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00017 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00161 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46807 * 89.99831 * 23 21 19 25 25 H 1.48501 * 109.47457 * 209.99627 * 23 21 19 26 26 H 1.48500 * 109.47049 * 330.00076 * 23 21 19 27 27 C 1.46904 * 110.17431 * 291.00173 * 5 4 3 28 28 C 1.33713 * 118.53271 * 179.97438 * 2 1 3 29 29 O 1.21289 * 118.62687 * 1.70713 * 28 2 1 30 30 H 1.08994 * 109.47383 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46687 * 300.05039 * 1 2 3 32 32 H 1.09004 * 109.46894 * 60.04145 * 1 2 3 33 33 H 1.08996 * 109.38825 * 41.64198 * 3 2 1 34 34 H 1.09001 * 109.35763 * 281.99838 * 3 2 1 35 35 H 1.08994 * 109.59564 * 290.50145 * 4 3 2 36 36 H 1.08998 * 109.59702 * 170.04329 * 4 3 2 37 37 H 1.09001 * 109.47263 * 186.21733 * 6 5 4 38 38 H 1.09004 * 109.46926 * 306.20714 * 6 5 4 39 39 H 0.97001 * 120.00553 * 0.02562 * 9 7 6 40 40 H 1.08998 * 110.03065 * 336.99102 * 12 10 9 41 41 H 1.08995 * 110.03540 * 98.37603 * 12 10 9 42 42 H 1.08998 * 110.03243 * 119.28671 * 13 12 10 43 43 H 1.08996 * 110.02771 * 240.66292 * 13 12 10 44 44 H 1.09000 * 110.48894 * 142.29237 * 14 13 12 45 45 H 1.09002 * 110.48442 * 264.80046 * 14 13 12 46 46 H 1.09006 * 109.46874 * 48.32860 * 17 15 14 47 47 H 1.08993 * 109.47434 * 168.32969 * 17 15 14 48 48 H 0.96999 * 119.99664 * 359.97438 * 18 17 15 49 49 H 0.97000 * 120.00050 * 180.02562 * 22 21 19 50 50 H 1.08994 * 109.38911 * 170.45387 * 27 5 4 51 51 H 1.08995 * 109.38806 * 290.25247 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1626 1.2826 0.0000 4 6 3.6127 1.0910 0.4481 5 7 4.2095 -0.0018 -0.3370 6 6 4.0677 0.2467 -1.7778 7 6 4.8887 1.4501 -2.1632 8 8 5.6153 1.9753 -1.3465 9 7 4.8156 1.9427 -3.4156 10 6 5.6142 3.1123 -3.7905 11 1 6.5836 3.0867 -3.2927 12 6 4.8625 4.4136 -3.4420 13 6 5.1581 5.4094 -4.5773 14 6 6.0795 4.6788 -5.5756 15 6 5.7935 3.1769 -5.3274 16 1 4.8800 2.8685 -5.8358 17 6 6.9795 2.3184 -5.7718 18 7 7.0505 2.3035 -7.2350 19 6 8.0380 1.5945 -7.8653 20 1 8.7647 1.0467 -7.2838 21 6 8.1050 1.5800 -9.2517 22 7 7.2190 2.2472 -9.9604 23 14 9.4525 0.6135 -10.1117 24 1 8.9818 -0.7715 -10.3677 25 1 9.7859 1.2693 -11.4017 26 1 10.6608 0.5743 -9.2494 27 6 3.6018 -1.2855 0.0383 28 6 2.1038 -1.1747 0.0005 29 8 1.4464 -2.1936 -0.0307 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5146 0.8895 32 1 -0.3633 0.5132 -0.8904 33 1 1.6604 1.9676 0.6832 34 1 2.1474 1.7021 -1.0059 35 1 3.6373 0.8358 1.5074 36 1 4.1723 2.0109 0.2783 37 1 4.4165 -0.6242 -2.3328 38 1 3.0195 0.4314 -2.0132 39 1 4.2342 1.5228 -4.0688 40 1 3.7912 4.2216 -3.3833 41 1 5.2230 4.8103 -2.4930 42 1 4.2302 5.7008 -5.0694 43 1 5.6619 6.2903 -4.1794 44 1 5.8248 4.9514 -6.5998 45 1 7.1247 4.9094 -5.3692 46 1 7.9018 2.7357 -5.3675 47 1 6.8493 1.3007 -5.4039 48 1 6.3975 2.7952 -7.7572 49 1 7.2656 2.2368 -10.9292 50 1 3.9251 -2.0569 -0.6607 51 1 3.9181 -1.5548 1.0459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496893658.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:50 Heat of formation + Delta-G solvation = -70.168996 kcal Electronic energy + Delta-G solvation = -30247.963107 eV Core-core repulsion = 26181.562322 eV Total energy + Delta-G solvation = -4066.400785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06916 -40.86993 -39.31546 -38.07897 -36.30150 -36.04797 -34.67250 -33.29580 -31.04617 -30.72533 -30.15967 -28.69161 -27.55016 -26.28714 -25.62396 -24.08473 -23.60249 -21.88435 -21.38435 -20.68739 -19.68763 -19.15965 -18.34297 -17.93173 -17.57588 -17.44637 -17.19764 -16.69364 -16.47070 -16.07101 -15.97306 -15.42979 -15.20174 -15.08113 -15.00222 -14.70418 -14.54205 -14.36637 -14.13241 -13.76910 -13.57678 -13.44604 -13.20927 -13.11205 -13.02795 -12.87033 -12.77638 -12.57464 -12.37473 -12.17630 -12.11906 -12.02797 -11.86273 -11.60593 -11.58962 -11.56183 -11.26457 -10.93121 -10.76100 -9.97434 -9.88434 -9.37294 -8.98942 -7.95514 -5.23461 1.41418 1.47409 1.48225 1.56865 1.66829 1.82472 2.06155 2.55592 2.89336 3.34676 3.37795 3.47810 3.68959 3.74808 3.81576 3.90722 3.94211 4.08177 4.18423 4.21553 4.32577 4.36810 4.45409 4.49020 4.51998 4.55147 4.57175 4.61268 4.63767 4.69991 4.71283 4.76519 4.88705 4.95266 4.99345 5.07154 5.17293 5.24339 5.27226 5.28467 5.33165 5.47794 5.53327 5.60182 5.68716 5.73998 6.24707 6.27302 6.61918 6.96026 7.31456 7.34265 8.09841 8.34353 9.27726 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013589 B = 0.002429 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.958860 B =11526.758092 C =12634.502989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.608 5.608 3 C 0.077 3.923 4 C 0.035 3.965 5 N -0.516 5.516 6 C 0.028 3.972 7 C 0.519 3.481 8 O -0.555 6.555 9 N -0.714 5.714 10 C 0.157 3.843 11 H 0.073 0.927 12 C -0.120 4.120 13 C -0.113 4.113 14 C -0.113 4.113 15 C -0.091 4.091 16 H 0.085 0.915 17 C 0.163 3.837 18 N -0.740 5.740 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.072 4.072 22 N -0.967 5.967 23 Si 0.970 3.030 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.273 1.273 27 C 0.049 3.951 28 C 0.480 3.520 29 O -0.593 6.593 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.410 0.590 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.011 0.989 47 H 0.015 0.985 48 H 0.376 0.624 49 H 0.252 0.748 50 H 0.120 0.880 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.353 2.084 22.984 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C -0.047 4.047 4 C -0.093 4.093 5 N -0.239 5.239 6 C -0.103 4.103 7 C 0.305 3.695 8 O -0.433 6.433 9 N -0.366 5.366 10 C 0.052 3.948 11 H 0.091 0.909 12 C -0.159 4.159 13 C -0.151 4.151 14 C -0.151 4.151 15 C -0.111 4.111 16 H 0.103 0.897 17 C 0.036 3.964 18 N -0.383 5.383 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.264 4.264 22 N -0.617 5.617 23 Si 0.799 3.201 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.198 1.198 27 C -0.082 4.082 28 C 0.268 3.732 29 O -0.474 6.474 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.246 0.754 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.029 0.971 47 H 0.033 0.967 48 H 0.208 0.792 49 H 0.060 0.940 50 H 0.138 0.862 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.478 1.825 23.677 27.305 hybrid contribution -0.481 -0.544 -1.624 1.779 sum -13.958 1.281 22.053 26.131 Atomic orbital electron populations 1.21848 0.78763 1.03700 1.03076 1.47539 1.08194 1.06247 1.72048 1.22267 0.94305 0.84621 1.03497 1.22731 0.91070 0.96479 0.99007 1.62201 1.55872 1.02342 1.03508 1.22188 0.99662 0.97965 0.90499 1.20625 0.82360 0.84649 0.81856 1.90672 1.40609 1.61310 1.50721 1.46003 1.46292 1.31627 1.12670 1.21646 0.94690 0.85261 0.93223 0.90853 1.22413 1.00802 0.93928 0.98720 1.22064 0.99739 0.98016 0.95316 1.22245 0.99805 0.93487 0.99535 1.22390 0.98246 0.96042 0.94393 0.89695 1.20741 0.95543 0.96374 0.83708 1.42489 1.34518 1.59763 1.01495 1.19584 1.05916 1.22240 0.89996 0.91197 1.25499 1.01514 1.02404 0.97030 1.69795 1.38873 1.47837 1.05225 0.85196 0.79184 0.77980 0.77748 1.21344 1.22054 1.19762 1.22553 0.85714 0.93312 1.06618 1.21735 0.93185 0.83000 0.75318 1.90705 1.68426 1.35930 1.52301 0.91265 0.90132 0.90744 0.87444 0.90901 0.88480 0.87717 0.86353 0.90083 0.75376 0.90249 0.91345 0.90624 0.90837 0.92401 0.92510 0.97119 0.96661 0.79172 0.93957 0.86196 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 10.55 127.77 1.35 2.17 16 2 N -0.61 -8.54 3.06 -850.22 -2.60 -11.14 16 3 C 0.08 0.75 5.68 86.47 0.49 1.25 16 4 C 0.03 0.45 5.62 86.24 0.48 0.93 16 5 N -0.52 -8.17 4.73 -905.48 -4.28 -12.45 16 6 C 0.03 0.43 4.86 85.56 0.42 0.85 16 7 C 0.52 10.84 7.47 87.66 0.65 11.49 16 8 O -0.56 -15.37 14.34 -3.01 -0.04 -15.41 16 9 N -0.71 -14.25 5.11 -437.49 -2.24 -16.49 16 10 C 0.16 3.76 2.60 46.06 0.12 3.88 16 11 H 0.07 2.11 7.57 -2.39 -0.02 2.10 16 12 C -0.12 -2.33 6.53 31.32 0.20 -2.13 16 13 C -0.11 -2.30 6.80 31.32 0.21 -2.09 16 14 C -0.11 -3.14 6.20 31.67 0.20 -2.94 16 15 C -0.09 -2.63 2.50 -9.51 -0.02 -2.66 16 16 H 0.08 2.40 8.02 -2.39 -0.02 2.38 16 17 C 0.16 6.35 5.70 86.38 0.49 6.84 16 18 N -0.74 -36.77 5.52 -343.46 -1.90 -38.67 16 19 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 20 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 21 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 22 N -0.97 -58.31 13.06 21.65 0.28 -58.03 16 23 Si 0.97 46.04 29.55 68.60 2.03 48.06 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.05 0.71 5.88 85.42 0.50 1.21 16 28 C 0.48 8.99 7.04 87.69 0.62 9.61 16 29 O -0.59 -16.04 16.07 -3.06 -0.05 -16.08 16 30 H 0.07 1.17 6.67 -2.39 -0.02 1.16 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 0.62 8.12 -2.39 -0.02 0.60 16 34 H 0.07 0.70 6.74 -2.39 -0.02 0.69 16 35 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16 36 H 0.10 1.69 6.25 -2.39 -0.01 1.67 16 37 H 0.12 1.70 7.91 -2.39 -0.02 1.68 16 38 H 0.08 1.05 5.67 -2.38 -0.01 1.03 16 39 H 0.41 6.74 8.53 -92.71 -0.79 5.95 16 40 H 0.08 1.31 8.04 -2.39 -0.02 1.30 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.71 7.94 -2.39 -0.02 1.69 16 46 H 0.01 0.45 7.99 -2.38 -0.02 0.43 16 47 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.38 19.60 7.67 -92.71 -0.71 18.89 16 49 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 50 H 0.12 1.67 7.88 -2.39 -0.02 1.65 16 51 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -74.30 400.05 -2.34 -76.64 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.56 Total: 31.64 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 7.02 Total: 11.92 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -10.74 Total: -136.77 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.09 Total: -31.49 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -74.30 -2.34 -76.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496893658.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.467 kcal (2) G-P(sol) polarization free energy of solvation -74.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds