Wall clock time and date at job start Tue Mar 31 2020 22:07:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46849 * 111.00158 * 2 1
4 4 C 1.53037 * 109.52025 * 174.16506 * 3 2 1
5 5 C 1.53116 * 109.28221 * 59.17843 * 4 3 2
6 6 C 1.53122 * 109.15029 * 302.33885 * 5 4 3
7 7 C 1.46847 * 110.99651 * 235.78901 * 2 1 3
8 8 H 1.09005 * 109.46266 * 65.83413 * 7 2 1
9 9 C 1.50705 * 109.46289 * 305.85989 * 7 2 1
10 10 O 1.21282 * 119.99770 * 339.97396 * 9 7 2
11 11 N 1.34779 * 119.99755 * 159.98242 * 9 7 2
12 12 C 1.46494 * 119.99708 * 180.02562 * 11 9 7
13 13 C 1.50700 * 109.47150 * 179.97438 * 12 11 9
14 14 C 1.31009 * 120.00094 * 124.99482 * 13 12 11
15 15 C 1.50693 * 119.99634 * 180.02562 * 14 13 12
16 16 N 1.46901 * 109.46784 * 125.00337 * 15 14 13
17 17 C 1.46902 * 110.99844 * 179.97438 * 16 15 14
18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 15
19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16
20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16
21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17
22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18
23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18
24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20
25 25 Si 1.86798 * 120.00325 * 179.97438 * 23 21 20
26 26 H 1.48506 * 109.46989 * 0.02562 * 25 23 21
27 27 H 1.48503 * 109.46903 * 119.99798 * 25 23 21
28 28 H 1.48498 * 109.47416 * 240.00213 * 25 23 21
29 29 H 1.08995 * 109.47438 * 184.21198 * 1 2 3
30 30 H 1.09006 * 109.46639 * 304.21279 * 1 2 3
31 31 H 1.08999 * 109.47136 * 64.20777 * 1 2 3
32 32 H 1.08994 * 109.46103 * 294.17642 * 3 2 1
33 33 H 1.09003 * 109.46254 * 54.15642 * 3 2 1
34 34 H 1.09002 * 109.49829 * 179.12035 * 4 3 2
35 35 H 1.09003 * 109.49935 * 299.23481 * 4 3 2
36 36 H 1.08997 * 109.52307 * 62.24758 * 5 4 3
37 37 H 1.08996 * 109.52499 * 182.37438 * 5 4 3
38 38 H 1.08993 * 109.51414 * 297.72329 * 6 5 4
39 39 H 1.08999 * 109.49114 * 177.60453 * 6 5 4
40 40 H 0.96996 * 120.00195 * 359.97438 * 11 9 7
41 41 H 1.08994 * 109.47739 * 59.99082 * 12 11 9
42 42 H 1.09008 * 109.46780 * 299.99145 * 12 11 9
43 43 H 1.07994 * 119.99885 * 304.99879 * 13 12 11
44 44 H 1.08001 * 119.99818 * 0.02562 * 14 13 12
45 45 H 1.08997 * 109.47969 * 5.00274 * 15 14 13
46 46 H 1.09005 * 109.47218 * 245.00036 * 15 14 13
47 47 H 1.00895 * 111.00207 * 303.94902 * 16 15 14
48 48 H 1.09004 * 109.47131 * 60.00016 * 17 16 15
49 49 H 1.08994 * 109.47471 * 299.99766 * 17 16 15
50 50 H 0.97000 * 120.00317 * 0.28382 * 20 18 17
51 51 H 0.96996 * 120.00330 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3709 0.0000
4 6 3.5182 1.3341 0.1466
5 6 4.1188 0.5368 -1.0145
6 6 3.5180 -0.8716 -1.0206
7 6 1.9952 -0.7708 -1.1337
8 1 1.7325 -0.2708 -2.0660
9 6 1.3980 -2.1544 -1.1206
10 8 0.9166 -2.5974 -0.0993
11 7 1.3990 -2.8995 -2.2437
12 6 0.8180 -4.2442 -2.2311
13 6 0.9448 -4.8591 -3.6011
14 6 1.5329 -6.0208 -3.7459
15 6 1.6601 -6.6353 -5.1159
16 7 3.0716 -6.9389 -5.3872
17 6 3.2343 -7.5412 -6.7171
18 6 4.6919 -7.8375 -6.9595
19 8 5.5142 -7.5734 -6.1079
20 7 5.0810 -8.4016 -8.1200
21 6 6.4063 -8.6764 -8.3383
22 1 7.1385 -8.4411 -7.5800
23 6 6.8075 -9.2574 -9.5349
24 7 5.9167 -9.5431 -10.4578
25 14 8.6134 -9.6311 -9.8325
26 1 9.4066 -9.2163 -8.6475
27 1 8.7866 -11.0887 -10.0580
28 1 9.0826 -8.8860 -11.0283
29 1 -0.3634 -1.0248 0.0755
30 1 -0.3633 0.5779 0.8499
31 1 -0.3633 0.4471 -0.9253
32 1 1.7325 1.8608 -0.9375
33 1 1.5636 1.9257 0.8331
34 1 3.9100 2.3511 0.1309
35 1 3.7814 0.8566 1.0905
36 1 3.8887 1.0353 -1.9561
37 1 5.1999 0.4722 -0.8913
38 1 3.7811 -1.3836 -0.0951
39 1 3.9099 -1.4304 -1.8705
40 1 1.7838 -2.5451 -3.0605
41 1 -0.2351 -4.1826 -1.9569
42 1 1.3469 -4.8617 -1.5050
43 1 0.5508 -4.3421 -4.4635
44 1 1.9266 -6.5379 -2.8833
45 1 1.2888 -5.9351 -5.8642
46 1 1.0762 -7.5548 -5.1574
47 1 3.6439 -6.1135 -5.2913
48 1 2.8737 -6.8475 -7.4768
49 1 2.6615 -8.4670 -6.7693
50 1 4.4234 -8.6131 -8.8010
51 1 6.1968 -9.9484 -11.2933
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001497613140.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:07:15
Heat of formation + Delta-G solvation = -53.568008 kcal
Electronic energy + Delta-G solvation = -28118.700050 eV
Core-core repulsion = 24053.019138 eV
Total energy + Delta-G solvation = -4065.680912 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.70247 -38.48266 -38.31785 -36.75430 -35.28566 -33.99026 -33.83436 -32.94491
-31.56846 -31.21971 -28.59203 -27.23691 -26.15711 -24.61030 -23.85236 -23.25470
-22.53063 -20.98182 -20.29164 -19.75487 -19.19289 -17.91595 -17.63309 -16.74606
-16.28759 -15.81998 -15.69162 -15.46083 -15.21271 -14.84807 -14.72218 -14.61828
-14.44621 -14.19685 -13.87107 -13.61498 -13.59395 -13.42565 -13.25715 -13.09187
-12.82961 -12.45313 -12.20177 -12.06349 -11.91397 -11.78074 -11.61445 -11.49883
-11.32131 -11.22885 -11.13780 -11.06770 -10.84768 -10.35799 -10.24547 -9.99260
-9.57740 -9.54108 -9.20850 -8.71171 -8.51036 -8.11730 -7.98362 -6.43888
-3.84778 1.76291 2.32449 2.89286 3.14919 3.25706 3.33042 3.54576
3.88086 4.09076 4.25583 4.30084 4.34245 4.48518 4.60416 4.64950
4.69664 4.80497 4.82115 5.01668 5.05283 5.07355 5.13410 5.21006
5.22785 5.24775 5.30018 5.35726 5.41199 5.49074 5.50575 5.58392
5.64683 5.69138 5.69564 5.72431 5.76821 5.93494 5.93631 6.07997
6.22530 6.39750 6.48876 6.52979 6.65152 7.13979 7.20919 7.53536
7.60320 7.94816 8.04338 8.58850 9.15839 9.51898 10.03166 10.73882
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.015850 B = 0.001569 C = 0.001455
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1766.182433 B =17841.339247 C =19244.091611
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 N -0.520 5.520
3 C 0.056 3.944
4 C -0.120 4.120
5 C -0.120 4.120
6 C -0.109 4.109
7 C 0.071 3.929
8 H 0.060 0.940
9 C 0.516 3.484
10 O -0.521 6.521
11 N -0.726 5.726
12 C 0.154 3.846
13 C -0.192 4.192
14 C -0.107 4.107
15 C 0.082 3.918
16 N -0.666 5.666
17 C 0.050 3.950
18 C 0.440 3.560
19 O -0.583 6.583
20 N -0.564 5.564
21 C -0.299 4.299
22 H 0.104 0.896
23 C 0.022 3.978
24 N -0.902 5.902
25 Si 0.930 3.070
26 H -0.268 1.268
27 H -0.281 1.281
28 H -0.282 1.282
29 H 0.088 0.912
30 H 0.069 0.931
31 H 0.019 0.981
32 H 0.033 0.967
33 H 0.079 0.921
34 H 0.069 0.931
35 H 0.074 0.926
36 H 0.062 0.938
37 H 0.072 0.928
38 H 0.080 0.920
39 H 0.075 0.925
40 H 0.402 0.598
41 H 0.073 0.927
42 H 0.073 0.927
43 H 0.114 0.886
44 H 0.120 0.880
45 H 0.032 0.968
46 H 0.083 0.917
47 H 0.351 0.649
48 H 0.044 0.956
49 H 0.087 0.913
50 H 0.392 0.608
51 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.049 20.750 14.918 28.695
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 N -0.246 5.246
3 C -0.071 4.071
4 C -0.158 4.158
5 C -0.158 4.158
6 C -0.147 4.147
7 C -0.041 4.041
8 H 0.078 0.922
9 C 0.301 3.699
10 O -0.396 6.396
11 N -0.379 5.379
12 C 0.031 3.969
13 C -0.212 4.212
14 C -0.127 4.127
15 C -0.047 4.047
16 N -0.298 5.298
17 C -0.082 4.082
18 C 0.226 3.774
19 O -0.467 6.467
20 N -0.200 5.200
21 C -0.429 4.429
22 H 0.122 0.878
23 C -0.180 4.180
24 N -0.543 5.543
25 Si 0.757 3.243
26 H -0.192 1.192
27 H -0.207 1.207
28 H -0.208 1.208
29 H 0.107 0.893
30 H 0.088 0.912
31 H 0.038 0.962
32 H 0.051 0.949
33 H 0.097 0.903
34 H 0.087 0.913
35 H 0.092 0.908
36 H 0.080 0.920
37 H 0.090 0.910
38 H 0.098 0.902
39 H 0.093 0.907
40 H 0.236 0.764
41 H 0.091 0.909
42 H 0.091 0.909
43 H 0.132 0.868
44 H 0.138 0.862
45 H 0.050 0.950
46 H 0.101 0.899
47 H 0.170 0.830
48 H 0.062 0.938
49 H 0.105 0.895
50 H 0.225 0.775
51 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -12.681 19.670 16.809 28.814
hybrid contribution 0.101 0.900 -2.544 2.700
sum -12.580 20.570 14.265 28.015
Atomic orbital electron populations
1.22595 0.86586 1.04182 0.99987 1.61646 1.08245 1.13115 1.41551
1.22152 0.95836 0.88480 1.00669 1.21630 0.94218 1.00332 0.99605
1.21578 1.00487 0.95016 0.98690 1.21568 0.91201 0.98236 1.03683
1.21605 0.96741 0.91951 0.93782 0.92199 1.20452 0.79098 0.87038
0.83275 1.90688 1.44905 1.72475 1.31536 1.46053 1.61913 1.16915
1.13029 1.20296 0.98897 0.82447 0.95217 1.22808 1.03414 0.97648
0.97317 1.23012 0.95272 0.95584 0.98792 1.21080 0.90929 0.99630
0.93036 1.60026 1.05870 1.34830 1.29094 1.21689 0.97014 0.99994
0.89522 1.19796 0.89290 0.84485 0.83876 1.90527 1.53792 1.57436
1.44946 1.41870 1.09267 1.53818 1.15066 1.19763 0.83990 1.37322
1.01813 0.87838 1.25267 1.00103 0.97166 0.95427 1.69619 1.34064
1.43170 1.07449 0.85794 0.82084 0.78009 0.78426 1.19200 1.20721
1.20774 0.89341 0.91194 0.96217 0.94873 0.90274 0.91252 0.90761
0.91971 0.90978 0.90170 0.90665 0.76433 0.90893 0.90860 0.86812
0.86195 0.94974 0.89915 0.83010 0.93843 0.89470 0.77455 0.91914
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.12 9.10 60.07 0.55 0.67 16
2 N -0.52 -4.66 4.51 -236.32 -1.07 -5.73 16
3 C 0.06 0.38 5.46 -3.83 -0.02 0.36 16
4 C -0.12 -0.72 6.09 -26.65 -0.16 -0.89 16
5 C -0.12 -0.73 6.00 -26.61 -0.16 -0.89 16
6 C -0.11 -0.82 5.36 -26.65 -0.14 -0.96 16
7 C 0.07 0.59 2.24 -68.87 -0.15 0.43 16
8 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
9 C 0.52 5.29 6.26 -10.98 -0.07 5.22 16
10 O -0.52 -7.26 14.52 5.56 0.08 -7.18 16
11 N -0.73 -6.03 5.55 -61.47 -0.34 -6.37 16
12 C 0.15 1.36 6.11 -5.20 -0.03 1.33 16
13 C -0.19 -1.60 9.24 -36.03 -0.33 -1.93 16
14 C -0.11 -1.07 9.38 -36.03 -0.34 -1.41 16
15 C 0.08 0.94 6.12 -4.98 -0.03 0.91 16
16 N -0.67 -10.42 6.11 -116.34 -0.71 -11.13 16
17 C 0.05 0.87 6.17 -4.97 -0.03 0.83 16
18 C 0.44 10.30 7.82 -10.98 -0.09 10.21 16
19 O -0.58 -15.77 15.78 5.55 0.09 -15.69 16
20 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16
21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16
22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16
23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16
24 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16
25 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16
26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
29 H 0.09 0.94 5.62 -51.93 -0.29 0.65 16
30 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16
31 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16
32 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16
33 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16
34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
40 H 0.40 2.49 8.46 -40.82 -0.35 2.14 16
41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
42 H 0.07 0.74 7.79 -51.92 -0.40 0.33 16
43 H 0.11 0.83 7.84 -52.49 -0.41 0.42 16
44 H 0.12 1.27 7.84 -52.49 -0.41 0.86 16
45 H 0.03 0.33 7.79 -51.93 -0.40 -0.07 16
46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
47 H 0.35 5.67 8.42 -39.29 -0.33 5.33 16
48 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
49 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16
50 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16
51 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16
LS Contribution 415.39 15.07 6.26 6.26
Total: -1.00 -33.29 415.39 -10.07 -43.36
By element:
Atomic # 1 Polarization: 21.28 SS G_CDS: -8.77 Total: 12.51 kcal
Atomic # 6 Polarization: 7.17 SS G_CDS: -1.25 Total: 5.92 kcal
Atomic # 7 Polarization: -59.62 SS G_CDS: -1.45 Total: -61.07 kcal
Atomic # 8 Polarization: -23.03 SS G_CDS: 0.17 Total: -22.86 kcal
Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal
Total LS contribution 6.26 Total: 6.26 kcal
Total: -33.29 -10.07 -43.36 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001497613140.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.211 kcal
(2) G-P(sol) polarization free energy of solvation -33.287 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.498 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.568 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds