Wall clock time and date at job start Tue Mar 31 2020 22:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47854 * 110.99807 * 2 1 4 4 C 1.54906 * 104.79493 * 146.36535 * 3 2 1 5 5 C 1.55143 * 101.65397 * 322.93372 * 4 3 2 6 6 C 1.47443 * 111.00471 * 120.84130 * 2 1 3 7 7 H 1.08998 * 109.88480 * 117.17320 * 6 2 1 8 8 C 1.50706 * 109.88436 * 356.14902 * 6 2 1 9 9 O 1.21279 * 120.00003 * 307.27590 * 8 6 2 10 10 N 1.34777 * 119.99632 * 127.27637 * 8 6 2 11 11 C 1.47429 * 125.65106 * 359.94349 * 10 8 6 12 12 C 1.54904 * 104.83137 * 155.91596 * 11 10 8 13 13 C 1.55154 * 101.58402 * 37.01311 * 12 11 10 14 14 C 1.47022 * 125.64762 * 179.97438 * 10 8 6 15 15 H 1.09005 * 110.01080 * 300.50111 * 14 10 8 16 16 C 1.52997 * 109.88259 * 61.59518 * 14 10 8 17 17 N 1.46893 * 109.47228 * 304.26409 * 16 14 10 18 18 C 1.46903 * 111.00117 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47121 * 179.97438 * 18 17 16 20 20 O 1.21294 * 119.99826 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99982 * 179.97438 * 19 18 17 22 22 C 1.37093 * 120.00128 * 180.02562 * 21 19 18 23 23 H 1.08005 * 119.99563 * 0.28254 * 22 21 19 24 24 C 1.38953 * 120.00462 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00372 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99393 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47256 * 90.00023 * 26 24 22 28 28 H 1.48510 * 109.46735 * 209.99799 * 26 24 22 29 29 H 1.48502 * 109.47316 * 329.99503 * 26 24 22 30 30 H 1.09003 * 109.46401 * 308.60104 * 1 2 3 31 31 H 1.08995 * 109.47212 * 68.59828 * 1 2 3 32 32 H 1.08995 * 109.46674 * 188.60537 * 1 2 3 33 33 H 1.09003 * 110.36900 * 265.19507 * 3 2 1 34 34 H 1.08991 * 110.37144 * 27.42565 * 3 2 1 35 35 H 1.09004 * 110.99099 * 81.02201 * 4 3 2 36 36 H 1.09000 * 110.99123 * 204.83678 * 4 3 2 37 37 H 1.09002 * 110.69944 * 277.26970 * 5 4 3 38 38 H 1.08995 * 110.70985 * 154.03991 * 5 4 3 39 39 H 1.09003 * 110.36039 * 37.08207 * 11 10 8 40 40 H 1.08995 * 110.46340 * 274.80499 * 11 10 8 41 41 H 1.08999 * 111.01095 * 278.93336 * 12 11 10 42 42 H 1.09003 * 111.03998 * 155.09765 * 12 11 10 43 43 H 1.09008 * 110.72337 * 206.13292 * 13 12 11 44 44 H 1.09000 * 110.72036 * 82.85760 * 13 12 11 45 45 H 1.09007 * 109.47016 * 184.26153 * 16 14 10 46 46 H 1.09003 * 109.47317 * 64.26390 * 16 14 10 47 47 H 1.00904 * 111.00446 * 303.95167 * 17 16 14 48 48 H 1.08997 * 109.47026 * 60.00417 * 18 17 16 49 49 H 1.08995 * 109.47091 * 300.00129 * 18 17 16 50 50 H 0.97002 * 119.99764 * 0.02562 * 21 19 18 51 51 H 0.96999 * 119.99804 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3804 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9160 0.2822 1.9314 6 6 1.9975 -0.7057 1.1818 7 1 2.5674 -1.5800 0.8674 8 6 0.8612 -1.1291 2.0766 9 8 0.0405 -0.3141 2.4413 10 7 0.7572 -2.4135 2.4716 11 6 1.6798 -3.5030 2.1038 12 6 1.5261 -4.5512 3.2338 13 6 0.0075 -4.4604 3.5386 14 6 -0.2955 -2.9603 3.3401 15 1 -0.2872 -2.4497 4.3031 16 6 -1.6616 -2.7895 2.6726 17 7 -1.8741 -1.3728 2.3476 18 6 -3.1787 -1.1704 1.7032 19 6 -3.3608 0.2916 1.3860 20 8 -2.4894 1.0866 1.6684 21 7 -4.4916 0.7154 0.7875 22 6 -4.6571 2.0453 0.4984 23 1 -3.8794 2.7526 0.7461 24 6 -5.8227 2.4823 -0.1191 25 7 -5.9811 3.7569 -0.3967 26 14 -7.1643 1.2577 -0.5547 27 1 -8.1094 1.1330 0.5839 28 1 -7.8968 1.7326 -1.7562 29 1 -6.5535 -0.0658 -0.8383 30 1 -0.3632 0.6412 0.8032 31 1 -0.3633 0.3750 -0.9567 32 1 -0.3632 -1.0161 0.1538 33 1 2.2147 1.7039 -1.0183 34 1 1.2881 2.0595 0.4706 35 1 4.1303 0.9283 0.2242 36 1 3.5495 2.2721 1.2639 37 1 2.3745 0.7747 2.7391 38 1 3.8001 -0.2279 2.3136 39 1 2.7050 -3.1348 2.0647 40 1 1.3959 -3.9352 1.1443 41 1 2.1170 -4.2742 4.1069 42 1 1.7952 -5.5475 2.8828 43 1 -0.1986 -4.7627 4.5654 44 1 -0.5639 -5.0660 2.8351 45 1 -2.4433 -3.1275 3.3531 46 1 -1.6955 -3.3812 1.7578 47 1 -1.7834 -0.7955 3.1702 48 1 -3.9711 -1.4971 2.3766 49 1 -3.2226 -1.7508 0.7817 50 1 -5.1883 0.0795 0.5613 51 1 -6.7949 4.0620 -0.8274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499882220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:19 Heat of formation + Delta-G solvation = -18.249939 kcal Electronic energy + Delta-G solvation = -32054.232885 eV Core-core repulsion = 27990.083479 eV Total energy + Delta-G solvation = -4064.149406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.63455 -38.73726 -38.18556 -36.49093 -35.09136 -33.70740 -31.91848 -31.64580 -31.52796 -30.35745 -28.96349 -26.89175 -25.12490 -24.68178 -23.51323 -22.72772 -21.66260 -21.11287 -20.40605 -19.22974 -18.53320 -18.16216 -17.37556 -16.66281 -16.01022 -15.57924 -15.36097 -15.07480 -14.76051 -14.43747 -14.31226 -14.05290 -13.82814 -13.62692 -13.41179 -13.26277 -13.06111 -12.94496 -12.62168 -12.47375 -12.38509 -12.02144 -11.75544 -11.68691 -11.59096 -11.48818 -11.34172 -11.15515 -11.14113 -11.02270 -10.98025 -10.86292 -10.71216 -10.61870 -10.51467 -9.88015 -9.43422 -9.38550 -8.56232 -8.27584 -8.05864 -7.80737 -7.63109 -6.20970 -3.70884 2.98736 3.09402 3.12766 3.13779 3.20506 3.92466 4.14851 4.19103 4.29854 4.35940 4.49201 4.63887 4.67424 4.79496 4.91296 4.98457 5.05217 5.15179 5.25641 5.29341 5.32644 5.37523 5.43540 5.49032 5.55316 5.58165 5.58188 5.63983 5.77450 5.78548 5.84609 5.88295 5.94764 5.97953 6.03882 6.07714 6.09793 6.13011 6.26601 6.46056 6.57727 7.02226 7.19540 7.34878 7.40089 7.71137 7.80273 7.95111 8.27511 8.68864 8.73525 9.08261 9.55409 10.00436 10.92786 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.003799 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.857616 B = 7368.729421 C = 9149.410791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.514 5.514 3 C 0.038 3.962 4 C -0.125 4.125 5 C -0.127 4.127 6 C 0.059 3.941 7 H 0.089 0.911 8 C 0.508 3.492 9 O -0.457 6.457 10 N -0.615 5.615 11 C 0.101 3.899 12 C -0.132 4.132 13 C -0.126 4.126 14 C 0.142 3.858 15 H 0.069 0.931 16 C 0.047 3.953 17 N -0.637 5.637 18 C 0.043 3.957 19 C 0.454 3.546 20 O -0.543 6.543 21 N -0.600 5.600 22 C -0.297 4.297 23 H 0.118 0.882 24 C 0.039 3.961 25 N -0.887 5.887 26 Si 0.878 3.122 27 H -0.273 1.273 28 H -0.278 1.278 29 H -0.270 1.270 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.028 0.972 46 H 0.067 0.933 47 H 0.360 0.640 48 H 0.034 0.966 49 H 0.077 0.923 50 H 0.368 0.632 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.918 -18.924 6.101 26.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.239 5.239 3 C -0.090 4.090 4 C -0.163 4.163 5 C -0.166 4.166 6 C -0.053 4.053 7 H 0.107 0.893 8 C 0.294 3.706 9 O -0.325 6.325 10 N -0.353 5.353 11 C -0.022 4.022 12 C -0.170 4.170 13 C -0.165 4.165 14 C 0.038 3.962 15 H 0.087 0.913 16 C -0.084 4.084 17 N -0.274 5.274 18 C -0.090 4.090 19 C 0.239 3.761 20 O -0.422 6.422 21 N -0.240 5.240 22 C -0.426 4.426 23 H 0.136 0.864 24 C -0.163 4.163 25 N -0.528 5.528 26 Si 0.705 3.295 27 H -0.199 1.199 28 H -0.203 1.203 29 H -0.196 1.196 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.046 0.954 46 H 0.085 0.915 47 H 0.184 0.816 48 H 0.052 0.948 49 H 0.095 0.905 50 H 0.200 0.800 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 17.414 -17.873 5.341 25.519 hybrid contribution -2.268 -0.849 0.780 2.544 sum 15.146 -18.722 6.121 24.847 Atomic orbital electron populations 1.23104 0.84605 1.03573 1.02922 1.64101 1.10912 1.14265 1.34627 1.23132 0.95376 0.90240 1.00278 1.22673 0.97870 0.99116 0.96690 1.22721 0.98683 0.96633 0.98557 1.22573 0.94205 0.98513 0.89995 0.89306 1.20578 0.87023 0.80954 0.82016 1.90807 1.39102 1.49523 1.53088 1.48493 1.27649 1.07782 1.51393 1.22234 0.94139 0.88067 0.97805 1.22755 0.96300 0.99166 0.98764 1.22652 0.96442 0.94828 1.02540 1.21502 0.87794 0.93276 0.93675 0.91290 1.22449 0.94985 0.92008 0.98950 1.60707 1.28611 1.03801 1.34327 1.21755 0.91287 0.96509 0.99475 1.19732 0.83486 0.89327 0.83528 1.90590 1.41375 1.55356 1.54921 1.42239 1.16961 1.08965 1.55880 1.19404 1.04448 0.82583 1.36190 0.86416 1.25005 0.97608 0.96023 0.97697 1.69622 1.27500 1.13410 1.42261 0.86689 0.82640 0.81082 0.79048 1.19866 1.20348 1.19609 0.88421 0.93261 0.91610 0.90354 0.92522 0.90896 0.90756 0.90463 0.90916 0.90935 0.91768 0.90725 0.90073 0.90267 0.90436 0.95396 0.91474 0.81623 0.94787 0.90477 0.80023 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 8.19 60.07 0.49 0.59 16 2 N -0.51 -8.06 5.44 -232.95 -1.27 -9.33 16 3 C 0.04 0.55 6.73 -2.29 -0.02 0.53 16 4 C -0.13 -1.41 7.08 -24.59 -0.17 -1.59 16 5 C -0.13 -1.49 6.45 -24.91 -0.16 -1.65 16 6 C 0.06 0.78 3.59 -67.88 -0.24 0.54 16 7 H 0.09 1.02 6.24 -51.93 -0.32 0.69 16 8 C 0.51 7.44 4.50 -10.98 -0.05 7.40 16 9 O -0.46 -8.45 9.66 5.56 0.05 -8.39 16 10 N -0.61 -7.10 3.07 -163.01 -0.50 -7.60 16 11 C 0.10 0.82 6.33 -2.53 -0.02 0.80 16 12 C -0.13 -0.79 7.08 -24.59 -0.17 -0.96 16 13 C -0.13 -0.88 6.48 -24.90 -0.16 -1.04 16 14 C 0.14 1.50 3.29 -66.95 -0.22 1.28 16 15 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.05 0.58 5.29 -3.83 -0.02 0.56 16 17 N -0.64 -10.50 2.68 -115.06 -0.31 -10.81 16 18 C 0.04 0.76 6.17 -4.97 -0.03 0.73 16 19 C 0.45 10.63 7.82 -10.98 -0.09 10.54 16 20 O -0.54 -14.62 13.98 5.55 0.08 -14.54 16 21 N -0.60 -14.82 5.09 -10.96 -0.06 -14.88 16 22 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 23 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 24 C 0.04 1.09 5.50 -17.47 -0.10 1.00 16 25 N -0.89 -26.70 13.96 55.50 0.77 -25.92 16 26 Si 0.88 20.18 27.74 -169.99 -4.71 15.46 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.27 -5.73 6.52 56.52 0.37 -5.36 16 30 H 0.10 2.19 4.17 -51.93 -0.22 1.98 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.26 6.70 -51.93 -0.35 0.91 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.97 7.63 -51.93 -0.40 0.57 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.06 7.69 -51.93 -0.40 0.66 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.51 7.07 -51.93 -0.37 0.15 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 44 H 0.08 0.51 7.78 -51.93 -0.40 0.11 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.82 8.04 -51.93 -0.42 0.41 16 47 H 0.36 6.71 7.02 -39.29 -0.28 6.43 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.37 8.13 5.76 -40.82 -0.24 7.89 16 51 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -33.76 386.65 -9.66 -43.42 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -8.44 Total: 16.87 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -1.11 Total: 9.91 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -1.36 Total: -68.55 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.13 Total: -22.93 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.71 Total: 15.46 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.76 -9.66 -43.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499882220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.167 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds