Wall clock time and date at job start Tue Mar 31 2020 22:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47854 * 110.99807 * 2 1 4 4 C 1.54906 * 104.79493 * 146.36535 * 3 2 1 5 5 C 1.55143 * 101.65397 * 322.93372 * 4 3 2 6 6 C 1.47443 * 111.00471 * 120.84130 * 2 1 3 7 7 H 1.08998 * 109.88480 * 117.17320 * 6 2 1 8 8 C 1.50706 * 109.88436 * 356.14902 * 6 2 1 9 9 O 1.21279 * 120.00003 * 307.27590 * 8 6 2 10 10 N 1.34777 * 119.99632 * 127.27637 * 8 6 2 11 11 C 1.47429 * 125.65106 * 359.94349 * 10 8 6 12 12 C 1.54904 * 104.83137 * 155.91596 * 11 10 8 13 13 C 1.55154 * 101.58402 * 37.01311 * 12 11 10 14 14 C 1.47022 * 125.64762 * 179.97438 * 10 8 6 15 15 H 1.09005 * 110.01080 * 300.50111 * 14 10 8 16 16 C 1.52997 * 109.88259 * 61.59518 * 14 10 8 17 17 N 1.46893 * 109.47228 * 304.26409 * 16 14 10 18 18 C 1.46903 * 111.00117 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47121 * 179.97438 * 18 17 16 20 20 O 1.21294 * 119.99826 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99982 * 179.97438 * 19 18 17 22 22 C 1.37093 * 120.00128 * 180.02562 * 21 19 18 23 23 H 1.08005 * 119.99563 * 0.28254 * 22 21 19 24 24 C 1.38953 * 120.00462 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00372 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99393 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47256 * 90.00023 * 26 24 22 28 28 H 1.48510 * 109.46735 * 209.99799 * 26 24 22 29 29 H 1.48502 * 109.47316 * 329.99503 * 26 24 22 30 30 H 1.09003 * 109.46401 * 308.60104 * 1 2 3 31 31 H 1.08995 * 109.47212 * 68.59828 * 1 2 3 32 32 H 1.08995 * 109.46674 * 188.60537 * 1 2 3 33 33 H 1.09003 * 110.36900 * 265.19507 * 3 2 1 34 34 H 1.08991 * 110.37144 * 27.42565 * 3 2 1 35 35 H 1.09004 * 110.99099 * 81.02201 * 4 3 2 36 36 H 1.09000 * 110.99123 * 204.83678 * 4 3 2 37 37 H 1.09002 * 110.69944 * 277.26970 * 5 4 3 38 38 H 1.08995 * 110.70985 * 154.03991 * 5 4 3 39 39 H 1.09003 * 110.36039 * 37.08207 * 11 10 8 40 40 H 1.08995 * 110.46340 * 274.80499 * 11 10 8 41 41 H 1.08999 * 111.01095 * 278.93336 * 12 11 10 42 42 H 1.09003 * 111.03998 * 155.09765 * 12 11 10 43 43 H 1.09008 * 110.72337 * 206.13292 * 13 12 11 44 44 H 1.09000 * 110.72036 * 82.85760 * 13 12 11 45 45 H 1.09007 * 109.47016 * 184.26153 * 16 14 10 46 46 H 1.09003 * 109.47317 * 64.26390 * 16 14 10 47 47 H 1.00904 * 111.00446 * 303.95167 * 17 16 14 48 48 H 1.08997 * 109.47026 * 60.00417 * 18 17 16 49 49 H 1.08995 * 109.47091 * 300.00129 * 18 17 16 50 50 H 0.97002 * 119.99764 * 0.02562 * 21 19 18 51 51 H 0.96999 * 119.99804 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3804 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9160 0.2822 1.9314 6 6 1.9975 -0.7057 1.1818 7 1 2.5674 -1.5800 0.8674 8 6 0.8612 -1.1291 2.0766 9 8 0.0405 -0.3141 2.4413 10 7 0.7572 -2.4135 2.4716 11 6 1.6798 -3.5030 2.1038 12 6 1.5261 -4.5512 3.2338 13 6 0.0075 -4.4604 3.5386 14 6 -0.2955 -2.9603 3.3401 15 1 -0.2872 -2.4497 4.3031 16 6 -1.6616 -2.7895 2.6726 17 7 -1.8741 -1.3728 2.3476 18 6 -3.1787 -1.1704 1.7032 19 6 -3.3608 0.2916 1.3860 20 8 -2.4894 1.0866 1.6684 21 7 -4.4916 0.7154 0.7875 22 6 -4.6571 2.0453 0.4984 23 1 -3.8794 2.7526 0.7461 24 6 -5.8227 2.4823 -0.1191 25 7 -5.9811 3.7569 -0.3967 26 14 -7.1643 1.2577 -0.5547 27 1 -8.1094 1.1330 0.5839 28 1 -7.8968 1.7326 -1.7562 29 1 -6.5535 -0.0658 -0.8383 30 1 -0.3632 0.6412 0.8032 31 1 -0.3633 0.3750 -0.9567 32 1 -0.3632 -1.0161 0.1538 33 1 2.2147 1.7039 -1.0183 34 1 1.2881 2.0595 0.4706 35 1 4.1303 0.9283 0.2242 36 1 3.5495 2.2721 1.2639 37 1 2.3745 0.7747 2.7391 38 1 3.8001 -0.2279 2.3136 39 1 2.7050 -3.1348 2.0647 40 1 1.3959 -3.9352 1.1443 41 1 2.1170 -4.2742 4.1069 42 1 1.7952 -5.5475 2.8828 43 1 -0.1986 -4.7627 4.5654 44 1 -0.5639 -5.0660 2.8351 45 1 -2.4433 -3.1275 3.3531 46 1 -1.6955 -3.3812 1.7578 47 1 -1.7834 -0.7955 3.1702 48 1 -3.9711 -1.4971 2.3766 49 1 -3.2226 -1.7508 0.7817 50 1 -5.1883 0.0795 0.5613 51 1 -6.7949 4.0620 -0.8274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499882220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:18 Heat of formation + Delta-G solvation = -45.097262 kcal Electronic energy + Delta-G solvation = -32055.397072 eV Core-core repulsion = 27990.083479 eV Total energy + Delta-G solvation = -4065.313593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.67772 -40.17318 -39.59786 -37.57535 -36.47310 -35.68596 -33.69944 -33.01081 -32.61085 -31.33113 -30.01213 -28.34154 -26.46775 -26.18487 -24.74407 -23.90603 -22.39280 -22.17932 -21.38542 -21.14948 -20.25412 -19.41581 -18.47511 -17.75822 -17.43735 -17.03626 -16.59568 -16.46757 -16.29433 -15.63894 -15.46941 -15.41307 -15.06183 -14.92511 -14.69999 -14.61425 -14.20053 -14.16753 -13.96382 -13.83144 -13.62758 -13.46140 -13.12373 -12.84854 -12.83502 -12.60693 -12.43231 -12.40971 -12.33681 -12.18627 -12.02409 -12.01344 -11.91611 -11.82718 -11.65593 -11.54388 -11.46458 -10.56290 -10.27732 -10.19542 -9.53657 -9.08319 -8.82687 -8.40161 -5.98981 1.26940 1.32597 1.41023 1.91598 2.04543 2.21833 2.22134 2.81988 3.13285 3.16693 3.47056 3.54102 3.70582 3.75558 3.83924 3.99456 4.04282 4.18931 4.22021 4.29951 4.34829 4.38542 4.46771 4.50652 4.53245 4.57738 4.62685 4.69375 4.77892 4.78384 4.84269 4.88102 4.91800 4.99441 5.03228 5.08069 5.16962 5.20219 5.27411 5.42429 5.45614 5.55085 5.65369 5.93944 5.95476 5.98671 6.19502 6.58150 6.64421 6.83558 6.93565 7.44990 7.63455 8.05960 8.78254 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.003799 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.857616 B = 7368.729421 C = 9149.410791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.513 5.513 3 C 0.030 3.970 4 C -0.113 4.113 5 C -0.123 4.123 6 C 0.055 3.945 7 H 0.118 0.882 8 C 0.501 3.499 9 O -0.505 6.505 10 N -0.614 5.614 11 C 0.092 3.908 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.137 3.863 15 H 0.054 0.946 16 C 0.048 3.952 17 N -0.648 5.648 18 C 0.057 3.943 19 C 0.451 3.549 20 O -0.583 6.583 21 N -0.601 5.601 22 C -0.319 4.319 23 H 0.052 0.948 24 C -0.018 4.018 25 N -0.939 5.939 26 Si 0.965 3.035 27 H -0.258 1.258 28 H -0.274 1.274 29 H -0.236 1.236 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.016 0.984 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.073 0.927 47 H 0.345 0.655 48 H 0.061 0.939 49 H 0.096 0.904 50 H 0.385 0.615 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.762 -23.947 6.186 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.238 5.238 3 C -0.098 4.098 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.057 4.057 7 H 0.136 0.864 8 C 0.288 3.712 9 O -0.377 6.377 10 N -0.351 5.351 11 C -0.030 4.030 12 C -0.158 4.158 13 C -0.155 4.155 14 C 0.033 3.967 15 H 0.072 0.928 16 C -0.082 4.082 17 N -0.284 5.284 18 C -0.075 4.075 19 C 0.238 3.762 20 O -0.465 6.465 21 N -0.244 5.244 22 C -0.449 4.449 23 H 0.070 0.930 24 C -0.216 4.216 25 N -0.581 5.581 26 Si 0.786 3.214 27 H -0.182 1.182 28 H -0.199 1.199 29 H -0.160 1.160 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.034 0.966 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.128 0.872 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.091 0.909 47 H 0.166 0.834 48 H 0.079 0.921 49 H 0.114 0.886 50 H 0.220 0.780 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.299 -22.975 5.438 29.871 hybrid contribution -2.390 0.771 0.819 2.641 sum 15.909 -22.204 6.257 28.023 Atomic orbital electron populations 1.22674 0.87040 1.02181 0.99923 1.64114 1.08467 1.14881 1.36344 1.23200 0.96395 0.89038 1.01135 1.22672 0.96455 0.99812 0.96157 1.22720 0.99288 0.96425 0.97691 1.22770 0.94217 0.99458 0.89211 0.86437 1.20804 0.86767 0.81707 0.81904 1.90818 1.40806 1.51189 1.54916 1.48538 1.28388 1.07560 1.50570 1.22526 0.94044 0.87544 0.98915 1.22750 0.95413 0.99638 0.98021 1.22644 0.97372 0.91620 1.03830 1.21645 0.86778 0.95784 0.92502 0.92831 1.22558 0.96597 0.89281 0.99731 1.60683 1.27684 1.06095 1.33969 1.21631 0.93120 0.91692 1.01099 1.20930 0.82106 0.91766 0.81390 1.90591 1.42638 1.57420 1.55822 1.42073 1.18162 1.07465 1.56743 1.18954 1.03802 0.83953 1.38147 0.93009 1.26068 1.00349 0.98602 0.96571 1.69811 1.28836 1.16351 1.43080 0.85358 0.78091 0.78971 0.79013 1.18229 1.19940 1.15987 0.92063 0.95748 0.91854 0.89533 0.96558 0.88091 0.89853 0.93287 0.87227 0.89543 0.91353 0.90315 0.87533 0.88717 0.89460 0.93741 0.90897 0.83359 0.92087 0.88552 0.78007 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.22 8.19 127.69 1.05 2.26 16 2 N -0.51 -16.49 5.44 -890.91 -4.85 -21.34 16 3 C 0.03 0.92 6.73 86.77 0.58 1.51 16 4 C -0.11 -2.43 7.08 31.98 0.23 -2.20 16 5 C -0.12 -2.74 6.45 31.77 0.20 -2.54 16 6 C 0.05 1.41 3.59 44.51 0.16 1.56 16 7 H 0.12 2.35 6.24 -2.39 -0.01 2.33 16 8 C 0.50 14.78 4.50 87.66 0.39 15.18 16 9 O -0.51 -19.83 9.66 -3.03 -0.03 -19.85 16 10 N -0.61 -13.25 3.07 -788.05 -2.42 -15.66 16 11 C 0.09 1.17 6.33 86.85 0.55 1.72 16 12 C -0.12 -0.93 7.08 31.98 0.23 -0.70 16 13 C -0.12 -1.19 6.48 31.78 0.21 -0.98 16 14 C 0.14 2.66 3.29 45.34 0.15 2.81 16 15 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 16 C 0.05 1.10 5.29 86.30 0.46 1.55 16 17 N -0.65 -21.52 2.68 -517.93 -1.39 -22.91 16 18 C 0.06 2.00 6.17 85.56 0.53 2.52 16 19 C 0.45 21.95 7.82 87.66 0.69 22.64 16 20 O -0.58 -33.97 13.98 -3.07 -0.04 -34.01 16 21 N -0.60 -30.45 5.09 -306.97 -1.56 -32.01 16 22 C -0.32 -19.72 10.16 84.04 0.85 -18.87 16 23 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 24 C -0.02 -1.06 5.50 84.93 0.47 -0.60 16 25 N -0.94 -59.15 13.96 21.66 0.30 -58.85 16 26 Si 0.97 41.35 27.74 68.60 1.90 43.25 16 27 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 29 H -0.24 -8.75 6.52 99.48 0.65 -8.10 16 30 H 0.06 3.01 4.17 -2.39 -0.01 3.00 16 31 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 2.52 6.70 -2.39 -0.02 2.51 16 33 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.02 0.61 7.63 -2.39 -0.02 0.60 16 35 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.38 7.69 -2.39 -0.02 1.36 16 38 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 0.88 7.07 -2.39 -0.02 0.86 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.09 0.77 7.78 -2.39 -0.02 0.75 16 45 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.07 1.59 8.04 -2.39 -0.02 1.57 16 47 H 0.34 13.42 7.02 -89.69 -0.63 12.79 16 48 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 50 H 0.39 16.52 5.76 -92.71 -0.53 15.99 16 51 H 0.28 15.97 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -84.17 386.65 -1.63 -85.79 By element: Atomic # 1 Polarization: 49.99 SS G_CDS: -0.28 Total: 49.71 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 6.74 Total: 25.87 kcal Atomic # 7 Polarization: -140.85 SS G_CDS: -9.91 Total: -150.76 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -0.07 Total: -53.86 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.90 Total: 43.25 kcal Total: -84.17 -1.63 -85.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499882220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.695 kcal (2) G-P(sol) polarization free energy of solvation -84.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds