Wall clock time and date at job start Tue Mar 31 2020 22:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46009 * 118.53940 * 2 1 4 4 C 1.52979 * 110.04176 * 161.81524 * 3 2 1 5 5 N 1.47189 * 108.72918 * 50.29673 * 4 3 2 6 6 C 1.46895 * 110.99980 * 54.36625 * 5 4 3 7 7 C 1.50704 * 109.47098 * 170.70936 * 6 5 4 8 8 O 1.21288 * 119.99812 * 353.80289 * 7 6 5 9 9 N 1.34771 * 120.00198 * 173.79782 * 7 6 5 10 10 C 1.47023 * 125.64641 * 0.02741 * 9 7 6 11 11 C 1.54328 * 107.26956 * 178.90338 * 10 9 7 12 12 C 1.55162 * 102.94390 * 337.80274 * 11 10 9 13 13 H 1.08994 * 111.00503 * 277.43284 * 12 11 10 14 14 C 1.52997 * 111.00263 * 153.61303 * 12 11 10 15 15 C 1.53002 * 109.47072 * 66.45800 * 14 12 11 16 16 N 1.46503 * 109.47110 * 179.97438 * 15 14 12 17 17 C 1.36932 * 119.99841 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00144 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99960 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00157 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00210 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46910 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47464 * 119.99843 * 21 19 17 24 24 H 1.48500 * 109.46817 * 240.00363 * 21 19 17 25 25 C 1.47422 * 125.64883 * 179.71295 * 9 7 6 26 26 C 1.46898 * 110.17422 * 290.99698 * 5 4 3 27 27 C 1.33716 * 118.53363 * 179.97438 * 2 1 3 28 28 O 1.21283 * 118.62652 * 1.68999 * 27 2 1 29 29 H 1.09003 * 109.46947 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46815 * 300.02026 * 1 2 3 31 31 H 1.09001 * 109.47093 * 60.02135 * 1 2 3 32 32 H 1.08995 * 109.37385 * 281.99309 * 3 2 1 33 33 H 1.09008 * 109.37121 * 41.64278 * 3 2 1 34 34 H 1.09007 * 109.58970 * 170.06643 * 4 3 2 35 35 H 1.08994 * 109.59720 * 290.52049 * 4 3 2 36 36 H 1.09004 * 109.47096 * 290.70344 * 6 5 4 37 37 H 1.08996 * 109.47728 * 50.71162 * 6 5 4 38 38 H 1.08998 * 109.88245 * 298.31268 * 10 9 7 39 39 H 1.08994 * 109.88562 * 59.33341 * 10 9 7 40 40 H 1.08997 * 110.72228 * 96.16597 * 11 10 9 41 41 H 1.09006 * 110.72157 * 219.44661 * 11 10 9 42 42 H 1.09002 * 109.47035 * 186.45555 * 14 12 11 43 43 H 1.08995 * 109.47186 * 306.45405 * 14 12 11 44 44 H 1.08989 * 109.47202 * 299.99982 * 15 14 12 45 45 H 1.09001 * 109.46774 * 59.99722 * 15 14 12 46 46 H 0.97007 * 119.99717 * 0.02562 * 16 15 14 47 47 H 0.96999 * 120.00551 * 180.02562 * 20 19 17 48 48 H 1.08997 * 110.37061 * 323.00708 * 25 9 7 49 49 H 1.09003 * 110.36651 * 85.33071 * 25 9 7 50 50 H 1.09004 * 109.38912 * 290.14476 * 26 5 4 51 51 H 1.09000 * 109.38730 * 170.45720 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2827 0.0000 4 6 3.6125 1.0909 0.4485 5 7 4.2095 -0.0017 -0.3366 6 6 4.0681 0.2472 -1.7774 7 6 4.8819 -0.7634 -2.5440 8 8 5.6048 -1.5357 -1.9506 9 7 4.8063 -0.8091 -3.8888 10 6 3.9751 0.0640 -4.7304 11 6 4.2330 -0.3345 -6.1989 12 6 5.6193 -1.0282 -6.1324 13 1 6.4247 -0.2940 -6.1473 14 6 5.7817 -2.0392 -7.2691 15 6 5.8185 -1.2997 -8.6080 16 7 5.9746 -2.2678 -9.6965 17 6 6.0326 -1.8352 -10.9944 18 1 5.9637 -0.7803 -11.2156 19 6 6.1799 -2.7525 -12.0258 20 7 6.2633 -4.0381 -11.7563 21 14 6.2598 -2.1623 -13.7963 22 1 6.1433 -0.6824 -13.8305 23 1 7.5550 -2.5714 -14.3966 24 1 5.1438 -2.7642 -14.5694 25 6 5.5484 -1.7385 -4.7599 26 6 3.6018 -1.2855 0.0381 27 6 2.1038 -1.1747 0.0005 28 8 1.4464 -2.1936 -0.0304 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 2.1476 1.7024 -1.0058 33 1 1.6602 1.9675 0.6833 34 1 4.1722 2.0109 0.2792 35 1 3.6368 0.8354 1.5078 36 1 3.0191 0.1588 -2.0601 37 1 4.4236 1.2511 -2.0094 38 1 2.9223 -0.0794 -4.4869 39 1 4.2535 1.1058 -4.5722 40 1 3.4703 -1.0297 -6.5495 41 1 4.2740 0.5486 -6.8366 42 1 6.7113 -2.5920 -7.1337 43 1 4.9415 -2.7336 -7.2605 44 1 4.8890 -0.7469 -8.7434 45 1 6.6587 -0.6053 -8.6165 46 1 6.0360 -3.2153 -9.4978 47 1 6.3666 -4.6791 -12.4769 48 1 6.5511 -1.9075 -4.3675 49 1 5.0117 -2.6828 -4.8515 50 1 3.9194 -1.5559 1.0452 51 1 3.9254 -2.0567 -0.6610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501587814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:15 Heat of formation + Delta-G solvation = -34.768570 kcal Electronic energy + Delta-G solvation = -29693.729085 eV Core-core repulsion = 25628.863378 eV Total energy + Delta-G solvation = -4064.865707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.45617 -40.10199 -38.26010 -37.37596 -35.43213 -35.15348 -33.07391 -31.08115 -30.56921 -29.82475 -29.54721 -27.88506 -26.82861 -25.20997 -24.03959 -23.17836 -22.76965 -21.53162 -20.16135 -19.91416 -18.67797 -17.86410 -17.33667 -17.10411 -16.92170 -16.59290 -16.28315 -15.79113 -15.50498 -15.12851 -14.73393 -14.48860 -14.21211 -14.06035 -13.75640 -13.61081 -13.49714 -13.37855 -13.24671 -13.06970 -12.85860 -12.71309 -12.54387 -12.24905 -12.16397 -11.93873 -11.84126 -11.67214 -11.33695 -11.08849 -10.85976 -10.82708 -10.67099 -10.48901 -10.34100 -10.04240 -9.96190 -9.69196 -9.31623 -8.87759 -8.85658 -8.79483 -6.91891 -5.76476 -3.05296 2.12214 2.33919 2.39962 2.62533 3.34679 3.42985 3.48129 3.50761 3.87873 4.09894 4.23095 4.27800 4.44609 4.52501 4.58545 4.62712 4.68797 4.78148 4.83187 4.83372 4.90152 4.99290 5.01718 5.04236 5.17918 5.22753 5.34337 5.36734 5.40265 5.54057 5.59668 5.65640 5.76067 5.78664 5.80963 5.87714 6.02749 6.09633 6.15018 6.23075 6.25629 6.35436 6.38555 6.83034 6.84046 6.87866 7.30874 7.63396 7.69789 7.96383 8.42531 9.53406 10.12255 10.46286 11.46533 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.001807 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.117524 B =15494.039145 C =15671.050183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.614 5.614 3 C 0.073 3.927 4 C 0.038 3.962 5 N -0.507 5.507 6 C 0.032 3.968 7 C 0.527 3.473 8 O -0.522 6.522 9 N -0.618 5.618 10 C 0.098 3.902 11 C -0.127 4.127 12 C -0.093 4.093 13 H 0.085 0.915 14 C -0.116 4.116 15 C 0.155 3.845 16 N -0.735 5.735 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.110 3.890 26 C 0.040 3.960 27 C 0.482 3.518 28 O -0.544 6.544 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.019 0.981 45 H 0.017 0.983 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.117 0.883 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.586 15.613 27.999 33.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.349 5.349 3 C -0.051 4.051 4 C -0.090 4.090 5 N -0.230 5.230 6 C -0.098 4.098 7 C 0.314 3.686 8 O -0.398 6.398 9 N -0.354 5.354 10 C -0.025 4.025 11 C -0.165 4.165 12 C -0.113 4.113 13 H 0.103 0.897 14 C -0.154 4.154 15 C 0.028 3.972 16 N -0.379 5.379 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.012 4.012 26 C -0.091 4.091 27 C 0.269 3.731 28 O -0.420 6.420 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.098 0.902 49 H 0.089 0.911 50 H 0.135 0.865 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.009 14.743 28.368 33.215 hybrid contribution -0.956 0.251 -1.230 1.578 sum -9.965 14.994 27.137 32.566 Atomic orbital electron populations 1.21761 0.79345 1.04717 1.01337 1.47428 1.07601 1.06027 1.73834 1.22194 0.94764 0.85485 1.02670 1.22683 0.91100 0.96065 0.99200 1.62180 1.55529 1.01950 1.03299 1.22095 0.99224 1.00091 0.88429 1.19998 0.82933 0.84972 0.80687 1.90724 1.39730 1.41758 1.67546 1.48536 1.45148 1.36645 1.05030 1.22128 0.94671 0.94149 0.91528 1.22738 0.97940 1.01925 0.93858 1.22292 0.97435 0.98113 0.93471 0.89685 1.21668 1.02490 0.97444 0.93817 1.20617 0.97585 0.92549 0.86483 1.42391 1.88467 1.05344 1.01719 1.19271 1.41906 0.92519 0.83309 0.91154 1.24764 1.03038 0.95344 0.98042 1.69670 1.57233 1.00120 1.31168 0.86112 0.77223 0.77654 0.85175 1.20572 1.21855 1.21874 1.22321 0.97186 0.92612 0.89063 1.22605 0.86283 0.93988 1.06206 1.21501 0.92615 0.83107 0.75851 1.90727 1.67394 1.34403 1.49464 0.89089 0.92093 0.92143 0.91195 0.89690 0.87752 0.88894 0.91658 0.87039 0.91699 0.91381 0.90009 0.89496 0.91451 0.91576 0.96302 0.96533 0.78297 0.93547 0.90221 0.91118 0.86484 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 10.55 59.85 0.63 1.07 16 2 N -0.61 -4.44 3.04 -182.47 -0.55 -4.99 16 3 C 0.07 0.28 5.71 -4.32 -0.02 0.25 16 4 C 0.04 0.15 6.03 -3.68 -0.02 0.13 16 5 N -0.51 -3.91 4.73 -237.55 -1.12 -5.03 16 6 C 0.03 0.25 3.73 -4.98 -0.02 0.23 16 7 C 0.53 6.06 7.29 -10.99 -0.08 5.98 16 8 O -0.52 -7.90 15.06 5.55 0.08 -7.82 16 9 N -0.62 -6.68 3.33 -170.66 -0.57 -7.25 16 10 C 0.10 0.81 6.47 -3.06 -0.02 0.79 16 11 C -0.13 -1.25 5.60 -24.89 -0.14 -1.39 16 12 C -0.09 -1.09 3.05 -88.59 -0.27 -1.36 16 13 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.12 -1.75 4.84 -26.73 -0.13 -1.88 16 15 C 0.16 2.99 6.11 -4.04 -0.02 2.97 16 16 N -0.74 -18.63 5.60 -59.91 -0.34 -18.97 16 17 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 20 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 21 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 C 0.11 1.32 6.37 -2.65 -0.02 1.30 16 26 C 0.04 0.38 5.50 -5.19 -0.03 0.35 16 27 C 0.48 5.02 6.83 -11.67 -0.08 4.94 16 28 O -0.54 -7.89 16.07 5.55 0.09 -7.80 16 29 H 0.09 0.78 6.67 -51.93 -0.35 0.44 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.21 7.08 -51.93 -0.37 -0.16 16 33 H 0.08 0.16 8.13 -51.92 -0.42 -0.26 16 34 H 0.10 0.23 8.14 -51.92 -0.42 -0.20 16 35 H 0.09 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.07 0.48 6.18 -51.93 -0.32 0.15 16 37 H 0.11 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 41 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 44 H 0.02 0.36 7.51 -51.94 -0.39 -0.03 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.38 10.25 7.67 -40.82 -0.31 9.93 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 49 H 0.07 0.88 8.03 -51.93 -0.42 0.47 16 50 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.12 1.51 6.03 -51.93 -0.31 1.20 16 LS Contribution 400.50 15.07 6.04 6.04 Total: -1.00 -36.53 400.50 -9.90 -46.42 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -8.76 Total: 3.77 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -0.47 Total: 5.95 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -1.86 Total: -63.96 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.17 Total: -15.62 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.53 -9.90 -46.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501587814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.654 kcal (2) G-P(sol) polarization free energy of solvation -36.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds