Wall clock time and date at job start Tue Mar 31 2020 22:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46009 * 118.53940 * 2 1 4 4 C 1.52979 * 110.04176 * 161.81524 * 3 2 1 5 5 N 1.47189 * 108.72918 * 50.29673 * 4 3 2 6 6 C 1.46895 * 110.99980 * 54.36625 * 5 4 3 7 7 C 1.50704 * 109.47098 * 170.70936 * 6 5 4 8 8 O 1.21288 * 119.99812 * 353.80289 * 7 6 5 9 9 N 1.34771 * 120.00198 * 173.79782 * 7 6 5 10 10 C 1.47023 * 125.64641 * 0.02741 * 9 7 6 11 11 C 1.54328 * 107.26956 * 178.90338 * 10 9 7 12 12 C 1.55162 * 102.94390 * 337.80274 * 11 10 9 13 13 H 1.08994 * 111.00503 * 277.43284 * 12 11 10 14 14 C 1.52997 * 111.00263 * 153.61303 * 12 11 10 15 15 C 1.53002 * 109.47072 * 66.45800 * 14 12 11 16 16 N 1.46503 * 109.47110 * 179.97438 * 15 14 12 17 17 C 1.36932 * 119.99841 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00144 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99960 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00157 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00210 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46910 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47464 * 119.99843 * 21 19 17 24 24 H 1.48500 * 109.46817 * 240.00363 * 21 19 17 25 25 C 1.47422 * 125.64883 * 179.71295 * 9 7 6 26 26 C 1.46898 * 110.17422 * 290.99698 * 5 4 3 27 27 C 1.33716 * 118.53363 * 179.97438 * 2 1 3 28 28 O 1.21283 * 118.62652 * 1.68999 * 27 2 1 29 29 H 1.09003 * 109.46947 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46815 * 300.02026 * 1 2 3 31 31 H 1.09001 * 109.47093 * 60.02135 * 1 2 3 32 32 H 1.08995 * 109.37385 * 281.99309 * 3 2 1 33 33 H 1.09008 * 109.37121 * 41.64278 * 3 2 1 34 34 H 1.09007 * 109.58970 * 170.06643 * 4 3 2 35 35 H 1.08994 * 109.59720 * 290.52049 * 4 3 2 36 36 H 1.09004 * 109.47096 * 290.70344 * 6 5 4 37 37 H 1.08996 * 109.47728 * 50.71162 * 6 5 4 38 38 H 1.08998 * 109.88245 * 298.31268 * 10 9 7 39 39 H 1.08994 * 109.88562 * 59.33341 * 10 9 7 40 40 H 1.08997 * 110.72228 * 96.16597 * 11 10 9 41 41 H 1.09006 * 110.72157 * 219.44661 * 11 10 9 42 42 H 1.09002 * 109.47035 * 186.45555 * 14 12 11 43 43 H 1.08995 * 109.47186 * 306.45405 * 14 12 11 44 44 H 1.08989 * 109.47202 * 299.99982 * 15 14 12 45 45 H 1.09001 * 109.46774 * 59.99722 * 15 14 12 46 46 H 0.97007 * 119.99717 * 0.02562 * 16 15 14 47 47 H 0.96999 * 120.00551 * 180.02562 * 20 19 17 48 48 H 1.08997 * 110.37061 * 323.00708 * 25 9 7 49 49 H 1.09003 * 110.36651 * 85.33071 * 25 9 7 50 50 H 1.09004 * 109.38912 * 290.14476 * 26 5 4 51 51 H 1.09000 * 109.38730 * 170.45720 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2827 0.0000 4 6 3.6125 1.0909 0.4485 5 7 4.2095 -0.0017 -0.3366 6 6 4.0681 0.2472 -1.7774 7 6 4.8819 -0.7634 -2.5440 8 8 5.6048 -1.5357 -1.9506 9 7 4.8063 -0.8091 -3.8888 10 6 3.9751 0.0640 -4.7304 11 6 4.2330 -0.3345 -6.1989 12 6 5.6193 -1.0282 -6.1324 13 1 6.4247 -0.2940 -6.1473 14 6 5.7817 -2.0392 -7.2691 15 6 5.8185 -1.2997 -8.6080 16 7 5.9746 -2.2678 -9.6965 17 6 6.0326 -1.8352 -10.9944 18 1 5.9637 -0.7803 -11.2156 19 6 6.1799 -2.7525 -12.0258 20 7 6.2633 -4.0381 -11.7563 21 14 6.2598 -2.1623 -13.7963 22 1 6.1433 -0.6824 -13.8305 23 1 7.5550 -2.5714 -14.3966 24 1 5.1438 -2.7642 -14.5694 25 6 5.5484 -1.7385 -4.7599 26 6 3.6018 -1.2855 0.0381 27 6 2.1038 -1.1747 0.0005 28 8 1.4464 -2.1936 -0.0304 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 2.1476 1.7024 -1.0058 33 1 1.6602 1.9675 0.6833 34 1 4.1722 2.0109 0.2792 35 1 3.6368 0.8354 1.5078 36 1 3.0191 0.1588 -2.0601 37 1 4.4236 1.2511 -2.0094 38 1 2.9223 -0.0794 -4.4869 39 1 4.2535 1.1058 -4.5722 40 1 3.4703 -1.0297 -6.5495 41 1 4.2740 0.5486 -6.8366 42 1 6.7113 -2.5920 -7.1337 43 1 4.9415 -2.7336 -7.2605 44 1 4.8890 -0.7469 -8.7434 45 1 6.6587 -0.6053 -8.6165 46 1 6.0360 -3.2153 -9.4978 47 1 6.3666 -4.6791 -12.4769 48 1 6.5511 -1.9075 -4.3675 49 1 5.0117 -2.6828 -4.8515 50 1 3.9194 -1.5559 1.0452 51 1 3.9254 -2.0567 -0.6610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501587814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:14 Heat of formation + Delta-G solvation = -62.645636 kcal Electronic energy + Delta-G solvation = -29694.937926 eV Core-core repulsion = 25628.863378 eV Total energy + Delta-G solvation = -4066.074548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11258 -40.95429 -39.13654 -38.17747 -36.82724 -36.01626 -34.57344 -32.70508 -31.06239 -30.61800 -30.57100 -28.89674 -27.73278 -25.93480 -25.48264 -24.14208 -23.46053 -22.98679 -21.23191 -20.67250 -19.37216 -19.11087 -18.54244 -17.99270 -17.56548 -17.32409 -17.13276 -16.71087 -16.41179 -16.24117 -15.87005 -15.52875 -15.33849 -15.22620 -14.94087 -14.72358 -14.37635 -14.26532 -14.05859 -13.90282 -13.66089 -13.57700 -13.29207 -13.09635 -13.02839 -12.86866 -12.79909 -12.78032 -12.61265 -12.35621 -12.20350 -12.12267 -11.96090 -11.66523 -11.62045 -11.55124 -11.49014 -10.93368 -10.89530 -9.87055 -9.68385 -9.41032 -8.99282 -7.95030 -5.24160 1.36270 1.47787 1.48981 1.56408 1.59091 1.75929 1.90747 2.56515 2.76831 3.32943 3.36787 3.39108 3.59650 3.70727 3.80753 3.82122 3.94965 4.12183 4.15356 4.17651 4.29608 4.31488 4.34572 4.36949 4.47183 4.51568 4.57868 4.60793 4.61932 4.64714 4.70403 4.79386 4.84114 4.87611 4.89332 4.95544 4.97370 5.09843 5.21339 5.26463 5.29791 5.38867 5.47255 5.50832 5.57291 5.77830 6.23422 6.27730 6.50172 6.93299 7.11998 7.33180 8.10922 8.32242 9.29050 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.001807 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.117524 B =15494.039145 C =15671.050183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.607 5.607 3 C 0.069 3.931 4 C 0.038 3.962 5 N -0.518 5.518 6 C 0.042 3.958 7 C 0.517 3.483 8 O -0.569 6.569 9 N -0.620 5.620 10 C 0.101 3.899 11 C -0.125 4.125 12 C -0.083 4.083 13 H 0.093 0.907 14 C -0.104 4.104 15 C 0.155 3.845 16 N -0.752 5.752 17 C -0.242 4.242 18 H 0.079 0.921 19 C -0.082 4.082 20 N -0.972 5.972 21 Si 0.976 3.024 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.111 3.889 26 C 0.048 3.952 27 C 0.479 3.521 28 O -0.599 6.599 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.031 0.969 45 H 0.020 0.980 46 H 0.372 0.628 47 H 0.251 0.749 48 H 0.066 0.934 49 H 0.057 0.943 50 H 0.122 0.878 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.517 19.987 28.590 36.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C -0.054 4.054 4 C -0.089 4.089 5 N -0.241 5.241 6 C -0.088 4.088 7 C 0.306 3.694 8 O -0.448 6.448 9 N -0.355 5.355 10 C -0.021 4.021 11 C -0.163 4.163 12 C -0.102 4.102 13 H 0.112 0.888 14 C -0.142 4.142 15 C 0.029 3.971 16 N -0.395 5.395 17 C -0.374 4.374 18 H 0.097 0.903 19 C -0.274 4.274 20 N -0.624 5.624 21 Si 0.805 3.195 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.221 1.221 25 C -0.012 4.012 26 C -0.084 4.084 27 C 0.266 3.734 28 O -0.480 6.480 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.165 0.835 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.038 0.962 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.140 0.860 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.963 19.241 28.978 36.183 hybrid contribution -0.668 -1.046 -1.345 1.830 sum -10.631 18.195 27.633 34.751 Atomic orbital electron populations 1.21856 0.78771 1.03370 1.03396 1.47571 1.08208 1.06376 1.71817 1.22503 0.94351 0.83928 1.04606 1.22874 0.91511 0.95738 0.98811 1.62195 1.56018 1.02077 1.03828 1.22125 0.98714 1.00147 0.87835 1.20836 0.82656 0.85129 0.80754 1.90702 1.41915 1.43709 1.68460 1.48648 1.45043 1.36582 1.05199 1.22288 0.95093 0.95148 0.89571 1.22744 0.96002 1.01990 0.95554 1.22115 0.99237 0.97260 0.91603 0.88846 1.21500 1.01693 0.97799 0.93227 1.20800 0.97899 0.91890 0.86559 1.42683 1.88455 1.05815 1.02497 1.19712 1.40205 0.92910 0.84603 0.90279 1.25644 1.03821 0.95549 1.02365 1.69834 1.59117 1.01305 1.32098 0.85034 0.76604 0.78030 0.79872 1.18671 1.22172 1.22085 1.22143 0.96631 0.92777 0.89639 1.22372 0.85937 0.94543 1.05500 1.21651 0.92796 0.83435 0.75504 1.90699 1.68360 1.36514 1.52424 0.92171 0.89713 0.90272 0.89331 0.86788 0.84778 0.88589 0.90931 0.83486 0.90253 0.88126 0.91007 0.88074 0.92549 0.92292 0.95102 0.96172 0.79687 0.94064 0.91593 0.92422 0.86045 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.55 127.77 1.35 2.08 16 2 N -0.61 -7.49 3.04 -850.19 -2.58 -10.07 16 3 C 0.07 0.22 5.71 86.47 0.49 0.71 16 4 C 0.04 0.16 6.03 86.24 0.52 0.68 16 5 N -0.52 -6.98 4.73 -905.48 -4.28 -11.26 16 6 C 0.04 0.52 3.73 85.56 0.32 0.84 16 7 C 0.52 11.48 7.29 87.66 0.64 12.12 16 8 O -0.57 -17.79 15.06 -3.05 -0.05 -17.84 16 9 N -0.62 -12.61 3.33 -812.22 -2.70 -15.31 16 10 C 0.10 1.33 6.47 86.73 0.56 1.89 16 11 C -0.13 -2.17 5.60 31.79 0.18 -1.99 16 12 C -0.08 -1.84 3.05 -9.48 -0.03 -1.87 16 13 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 14 C -0.10 -3.15 4.84 30.59 0.15 -3.00 16 15 C 0.15 5.85 6.11 86.38 0.53 6.37 16 16 N -0.75 -38.39 5.60 -343.46 -1.92 -40.31 16 17 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 20 N -0.97 -60.41 13.06 21.65 0.28 -60.12 16 21 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 C 0.11 2.68 6.37 86.78 0.55 3.23 16 26 C 0.05 0.92 5.50 85.42 0.47 1.39 16 27 C 0.48 9.99 6.83 87.68 0.60 10.59 16 28 O -0.60 -18.46 16.07 -3.04 -0.05 -18.51 16 29 H 0.06 1.05 6.67 -2.39 -0.02 1.04 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.04 7.08 -2.39 -0.02 0.03 16 33 H 0.11 -0.19 8.13 -2.38 -0.02 -0.21 16 34 H 0.13 -0.14 8.14 -2.38 -0.02 -0.16 16 35 H 0.10 0.40 8.08 -2.39 -0.02 0.38 16 36 H 0.07 0.82 6.18 -2.38 -0.01 0.81 16 37 H 0.15 0.78 8.09 -2.39 -0.02 0.76 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 1.41 8.01 -2.39 -0.02 1.39 16 41 H 0.10 1.51 8.13 -2.38 -0.02 1.49 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.86 8.11 -2.39 -0.02 1.84 16 44 H 0.03 1.12 7.51 -2.39 -0.02 1.10 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.37 20.40 7.67 -92.70 -0.71 19.68 16 47 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 48 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 49 H 0.06 1.52 8.03 -2.39 -0.02 1.50 16 50 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.09 2.39 6.03 -2.39 -0.01 2.37 16 Total: -1.00 -83.60 400.50 -1.43 -85.03 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.21 Total: 24.18 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 7.64 Total: 16.04 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -11.20 Total: -137.08 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.09 Total: -36.35 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -83.60 -1.43 -85.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501587814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.384 kcal (2) G-P(sol) polarization free energy of solvation -83.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds