Wall clock time and date at job start Tue Mar 31 2020 21:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21280 * 120.00073 * 2 1 4 4 N 1.34776 * 120.00300 * 179.97438 * 2 1 3 5 5 C 1.46504 * 120.00619 * 179.97438 * 4 2 1 6 6 H 1.09003 * 109.46568 * 35.00689 * 5 4 2 7 7 C 1.52996 * 109.47326 * 275.00896 * 5 4 2 8 8 C 1.50699 * 109.47095 * 155.00337 * 5 4 2 9 9 O 1.21283 * 119.99760 * 15.91328 * 8 5 4 10 10 N 1.34778 * 119.99704 * 195.90989 * 8 5 4 11 11 C 1.47021 * 125.64353 * 184.06019 * 10 8 5 12 12 C 1.54328 * 107.26744 * 181.02465 * 11 10 8 13 13 C 1.55157 * 102.94210 * 22.18983 * 12 11 10 14 14 H 1.08993 * 111.00387 * 82.61402 * 13 12 11 15 15 N 1.46908 * 110.99943 * 206.42556 * 13 12 11 16 16 C 1.46896 * 110.99871 * 298.34710 * 15 13 12 17 17 C 1.53242 * 109.33784 * 172.74919 * 16 15 13 18 18 N 1.47081 * 108.52056 * 53.82492 * 17 16 15 19 19 C 1.36938 * 120.87787 * 128.79722 * 18 17 16 20 20 H 1.08005 * 119.99881 * 206.63550 * 19 18 17 21 21 C 1.38810 * 120.00246 * 26.62927 * 19 18 17 22 22 N 1.31621 * 119.99843 * 16.49503 * 21 19 18 23 23 Si 1.86803 * 120.00007 * 196.48678 * 21 19 18 24 24 H 1.48498 * 109.46752 * 90.00690 * 23 21 19 25 25 H 1.48505 * 109.47129 * 210.00453 * 23 21 19 26 26 H 1.48495 * 109.47438 * 330.00451 * 23 21 19 27 27 C 1.47077 * 118.23902 * 308.81513 * 18 17 16 28 28 C 1.46895 * 110.99705 * 174.04436 * 15 13 12 29 29 C 1.47424 * 125.64969 * 3.74842 * 10 8 5 30 30 H 1.08997 * 109.47593 * 90.00051 * 1 2 3 31 31 H 1.08997 * 109.47314 * 210.00563 * 1 2 3 32 32 H 1.09009 * 109.47027 * 330.00191 * 1 2 3 33 33 H 0.96999 * 119.99635 * 0.02562 * 4 2 1 34 34 H 1.09000 * 109.47030 * 185.63910 * 7 5 4 35 35 H 1.08996 * 109.46953 * 305.64036 * 7 5 4 36 36 H 1.09005 * 109.47400 * 65.64029 * 7 5 4 37 37 H 1.09000 * 109.88151 * 300.43442 * 11 10 8 38 38 H 1.08995 * 109.88892 * 61.60565 * 11 10 8 39 39 H 1.08999 * 110.71955 * 140.55641 * 12 11 10 40 40 H 1.09002 * 110.71767 * 263.82299 * 12 11 10 41 41 H 1.08999 * 109.49463 * 292.70480 * 16 15 13 42 42 H 1.08996 * 109.49890 * 52.78877 * 16 15 13 43 43 H 1.08998 * 109.62983 * 294.11953 * 17 16 15 44 44 H 1.08996 * 109.63089 * 173.53588 * 17 16 15 45 45 H 0.96998 * 119.99955 * 179.97438 * 22 21 19 46 46 H 1.08991 * 109.62770 * 291.47686 * 27 18 17 47 47 H 1.09005 * 109.62627 * 170.89019 * 27 18 17 48 48 H 1.09002 * 109.49299 * 307.21463 * 28 15 13 49 49 H 1.08997 * 109.49364 * 67.26572 * 28 15 13 50 50 H 1.08997 * 110.36557 * 274.75005 * 29 10 8 51 51 H 1.08998 * 110.36367 * 37.06986 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0094 -0.3251 0.5888 7 6 4.1554 -1.0423 -1.4373 8 6 4.1484 -2.4546 0.6010 9 8 3.3982 -3.3995 0.7248 10 7 5.4315 -2.5558 1.0009 11 6 6.0728 -3.7715 1.5229 12 6 7.5308 -3.4061 1.8728 13 6 7.4682 -1.8669 2.0588 14 1 7.1209 -1.6081 3.0589 15 7 8.7721 -1.2497 1.7809 16 6 9.7968 -1.7430 2.7106 17 6 11.1699 -1.2185 2.2772 18 7 11.0937 0.2452 2.1551 19 6 12.0104 1.0510 2.7761 20 1 11.7423 2.0597 3.0538 21 6 13.2841 0.5713 3.0489 22 7 13.7239 -0.5105 2.4416 23 14 14.3740 1.4611 4.2776 24 1 14.1440 0.9063 5.6358 25 1 15.7985 1.2749 3.9015 26 1 14.0459 2.9094 4.2724 27 6 10.0066 0.8206 1.3486 28 6 8.6793 0.2159 1.8187 29 6 6.4260 -1.4677 0.9814 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6959 -2.0072 0.0005 34 1 5.2407 -1.1428 -1.4480 35 1 3.7117 -1.8273 -2.0495 36 1 3.8768 -0.0677 -1.8381 37 1 5.5508 -4.1111 2.4175 38 1 6.0587 -4.5534 0.7636 39 1 7.8393 -3.8940 2.7974 40 1 8.2012 -3.6688 1.0546 41 1 9.5742 -1.3905 3.7178 42 1 9.8037 -2.8329 2.6995 43 1 11.4405 -1.6526 1.3147 44 1 11.9165 -1.4851 3.0252 45 1 14.6141 -0.8455 2.6319 46 1 10.1654 0.5825 0.2970 47 1 9.9840 1.9021 1.4829 48 1 7.8757 0.5466 1.1608 49 1 8.4718 0.5410 2.8382 50 1 6.8969 -1.4018 0.0006 51 1 5.9559 -0.5195 1.2419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502097701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:43 Heat of formation + Delta-G solvation = -32.285145 kcal Electronic energy + Delta-G solvation = -30426.900588 eV Core-core repulsion = 26362.142570 eV Total energy + Delta-G solvation = -4064.758018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.84390 -39.68611 -38.59100 -36.90664 -35.26844 -34.21168 -32.34503 -31.49801 -30.46896 -30.14290 -29.10943 -28.48186 -26.08534 -25.13919 -23.39576 -22.85532 -22.07707 -20.85547 -20.47883 -19.63329 -19.20145 -17.94056 -17.21970 -16.87359 -16.48519 -16.22981 -15.68153 -15.25553 -15.03689 -14.60544 -14.26139 -14.18211 -14.08702 -13.90324 -13.57831 -13.43450 -13.40918 -13.25290 -13.04880 -12.93779 -12.69736 -12.54387 -12.37369 -12.32387 -11.96807 -11.83894 -11.33009 -11.30150 -11.07413 -10.93150 -10.77733 -10.47101 -10.35683 -10.27120 -10.19612 -10.06208 -9.77672 -9.64190 -9.50955 -8.93221 -8.54240 -7.97515 -6.70537 -5.81061 -3.22588 2.18326 2.31433 2.42858 3.01993 3.35943 3.43138 3.44166 3.92590 4.27489 4.34476 4.47030 4.48113 4.61930 4.72255 4.75139 4.86837 4.98165 5.02361 5.07904 5.20426 5.27057 5.35817 5.38467 5.40936 5.43035 5.48883 5.58584 5.69630 5.73567 5.79844 5.82724 5.87684 5.92425 6.04021 6.07498 6.11041 6.19294 6.27294 6.48070 6.62951 6.87670 7.14012 7.15514 7.19458 7.47796 7.57277 7.64634 7.74090 7.78084 7.87415 8.40522 9.18442 9.81455 10.39325 11.27732 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.002341 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.285010 B =11957.278659 C =12900.120829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.545 6.545 4 N -0.716 5.716 5 C 0.127 3.873 6 H 0.111 0.889 7 C -0.158 4.158 8 C 0.529 3.471 9 O -0.543 6.543 10 N -0.610 5.610 11 C 0.111 3.889 12 C -0.124 4.124 13 C 0.069 3.931 14 H 0.053 0.947 15 N -0.520 5.520 16 C 0.036 3.964 17 C 0.178 3.822 18 N -0.596 5.596 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.149 3.851 28 C 0.041 3.959 29 C 0.103 3.897 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.410 0.590 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.026 0.974 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.090 0.910 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.029 0.971 50 H 0.088 0.912 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.711 -5.512 -4.896 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.422 6.422 4 N -0.371 5.371 5 C 0.019 3.981 6 H 0.129 0.871 7 C -0.216 4.216 8 C 0.316 3.684 9 O -0.421 6.421 10 N -0.343 5.343 11 C -0.012 4.012 12 C -0.162 4.162 13 C -0.041 4.041 14 H 0.070 0.930 15 N -0.246 5.246 16 C -0.093 4.093 17 C 0.052 3.948 18 N -0.319 5.319 19 C -0.381 4.381 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.023 3.977 28 C -0.089 4.089 29 C -0.020 4.020 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.247 0.753 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.048 0.952 50 H 0.106 0.894 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.427 -5.444 -5.300 23.679 hybrid contribution 0.223 0.189 1.506 1.535 sum -22.203 -5.255 -3.794 23.130 Atomic orbital electron populations 1.21868 0.91165 1.05082 1.04937 1.20866 0.90770 0.83135 0.75217 1.90747 1.70712 1.31300 1.49446 1.45933 1.05741 1.09822 1.75623 1.20729 0.82064 0.96539 0.98815 0.87114 1.22095 1.02159 1.03639 0.93730 1.20191 0.80648 0.89650 0.77878 1.90682 1.54819 1.40173 1.56405 1.48371 1.09608 1.13325 1.63025 1.21989 0.92906 0.87174 0.99095 1.22736 0.94857 0.95262 1.03340 1.22777 0.90626 0.94479 0.96176 0.92965 1.62048 1.03416 1.06705 1.52405 1.22927 0.94852 0.98563 0.92964 1.20879 0.90775 0.83096 1.00050 1.44126 1.29844 1.01878 1.56044 1.19204 0.90884 0.97015 1.30986 0.91616 1.25027 0.96300 0.98443 0.99979 1.70016 1.17747 1.24902 1.42178 0.86277 0.79806 0.79306 0.81310 1.21519 1.21736 1.20466 1.20968 0.86655 0.95936 0.94190 1.22687 1.00042 0.86922 0.99213 1.22551 0.88905 0.89545 1.00966 0.88672 0.90021 0.88673 0.75252 0.90592 0.91656 0.90536 0.91339 0.91064 0.89957 0.89014 0.95605 0.91826 0.95502 0.89229 0.93605 0.95567 0.92549 0.91911 0.95238 0.89351 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.30 36.00 0.37 -0.54 16 2 C 0.51 4.91 7.90 -10.99 -0.09 4.82 16 3 O -0.55 -7.47 16.76 5.56 0.09 -7.37 16 4 N -0.72 -6.47 5.03 -54.93 -0.28 -6.75 16 5 C 0.13 1.27 2.38 -69.08 -0.16 1.11 16 6 H 0.11 1.20 6.49 -51.93 -0.34 0.86 16 7 C -0.16 -1.39 9.43 37.16 0.35 -1.04 16 8 C 0.53 6.11 7.12 -10.99 -0.08 6.03 16 9 O -0.54 -7.51 16.21 5.56 0.09 -7.42 16 10 N -0.61 -6.68 3.32 -170.39 -0.57 -7.25 16 11 C 0.11 1.15 6.87 -3.06 -0.02 1.13 16 12 C -0.12 -1.32 5.32 -24.89 -0.13 -1.45 16 13 C 0.07 0.86 2.73 -65.44 -0.18 0.68 16 14 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 15 N -0.52 -8.18 4.52 -223.64 -1.01 -9.19 16 16 C 0.04 0.64 5.48 -3.70 -0.02 0.62 16 17 C 0.18 4.10 5.42 -3.60 -0.02 4.08 16 18 N -0.60 -14.57 3.04 -172.02 -0.52 -15.09 16 19 C -0.25 -6.77 9.63 -15.06 -0.15 -6.92 16 20 H 0.07 1.75 7.88 -52.48 -0.41 1.33 16 21 C 0.00 0.02 4.95 -17.43 -0.09 -0.06 16 22 N -0.90 -25.73 11.12 55.49 0.62 -25.12 16 23 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 27 C 0.15 3.02 6.69 -3.60 -0.02 2.99 16 28 C 0.04 0.67 5.48 -3.70 -0.02 0.65 16 29 C 0.10 1.11 4.51 -2.41 -0.01 1.10 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.41 3.24 7.72 -40.82 -0.32 2.93 16 34 H 0.08 0.64 6.99 -51.93 -0.36 0.27 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.82 7.94 -51.93 -0.41 0.41 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 1.01 6.85 -51.93 -0.36 0.65 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 2.31 6.10 -51.93 -0.32 1.99 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 48 H 0.06 0.86 6.80 -51.93 -0.35 0.51 16 49 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.09 0.96 7.61 -51.93 -0.40 0.56 16 51 H 0.08 0.77 6.75 -51.93 -0.35 0.42 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -32.60 398.36 -9.53 -42.12 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.66 Total: 0.47 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: -0.27 Total: 13.20 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -1.76 Total: -63.39 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.18 Total: -14.79 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.60 -9.53 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502097701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.836 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds