Wall clock time and date at job start Tue Mar 31 2020 21:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21280 * 120.00073 * 2 1 4 4 N 1.34776 * 120.00300 * 179.97438 * 2 1 3 5 5 C 1.46504 * 120.00619 * 179.97438 * 4 2 1 6 6 H 1.09003 * 109.46568 * 35.00689 * 5 4 2 7 7 C 1.52996 * 109.47326 * 275.00896 * 5 4 2 8 8 C 1.50699 * 109.47095 * 155.00337 * 5 4 2 9 9 O 1.21283 * 119.99760 * 15.91328 * 8 5 4 10 10 N 1.34778 * 119.99704 * 195.90989 * 8 5 4 11 11 C 1.47021 * 125.64353 * 184.06019 * 10 8 5 12 12 C 1.54328 * 107.26744 * 181.02465 * 11 10 8 13 13 C 1.55157 * 102.94210 * 22.18983 * 12 11 10 14 14 H 1.08993 * 111.00387 * 82.61402 * 13 12 11 15 15 N 1.46908 * 110.99943 * 206.42556 * 13 12 11 16 16 C 1.46896 * 110.99871 * 298.34710 * 15 13 12 17 17 C 1.53242 * 109.33784 * 172.74919 * 16 15 13 18 18 N 1.47081 * 108.52056 * 53.82492 * 17 16 15 19 19 C 1.36938 * 120.87787 * 128.79722 * 18 17 16 20 20 H 1.08005 * 119.99881 * 206.63550 * 19 18 17 21 21 C 1.38810 * 120.00246 * 26.62927 * 19 18 17 22 22 N 1.31621 * 119.99843 * 16.49503 * 21 19 18 23 23 Si 1.86803 * 120.00007 * 196.48678 * 21 19 18 24 24 H 1.48498 * 109.46752 * 90.00690 * 23 21 19 25 25 H 1.48505 * 109.47129 * 210.00453 * 23 21 19 26 26 H 1.48495 * 109.47438 * 330.00451 * 23 21 19 27 27 C 1.47077 * 118.23902 * 308.81513 * 18 17 16 28 28 C 1.46895 * 110.99705 * 174.04436 * 15 13 12 29 29 C 1.47424 * 125.64969 * 3.74842 * 10 8 5 30 30 H 1.08997 * 109.47593 * 90.00051 * 1 2 3 31 31 H 1.08997 * 109.47314 * 210.00563 * 1 2 3 32 32 H 1.09009 * 109.47027 * 330.00191 * 1 2 3 33 33 H 0.96999 * 119.99635 * 0.02562 * 4 2 1 34 34 H 1.09000 * 109.47030 * 185.63910 * 7 5 4 35 35 H 1.08996 * 109.46953 * 305.64036 * 7 5 4 36 36 H 1.09005 * 109.47400 * 65.64029 * 7 5 4 37 37 H 1.09000 * 109.88151 * 300.43442 * 11 10 8 38 38 H 1.08995 * 109.88892 * 61.60565 * 11 10 8 39 39 H 1.08999 * 110.71955 * 140.55641 * 12 11 10 40 40 H 1.09002 * 110.71767 * 263.82299 * 12 11 10 41 41 H 1.08999 * 109.49463 * 292.70480 * 16 15 13 42 42 H 1.08996 * 109.49890 * 52.78877 * 16 15 13 43 43 H 1.08998 * 109.62983 * 294.11953 * 17 16 15 44 44 H 1.08996 * 109.63089 * 173.53588 * 17 16 15 45 45 H 0.96998 * 119.99955 * 179.97438 * 22 21 19 46 46 H 1.08991 * 109.62770 * 291.47686 * 27 18 17 47 47 H 1.09005 * 109.62627 * 170.89019 * 27 18 17 48 48 H 1.09002 * 109.49299 * 307.21463 * 28 15 13 49 49 H 1.08997 * 109.49364 * 67.26572 * 28 15 13 50 50 H 1.08997 * 110.36557 * 274.75005 * 29 10 8 51 51 H 1.08998 * 110.36367 * 37.06986 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0094 -0.3251 0.5888 7 6 4.1554 -1.0423 -1.4373 8 6 4.1484 -2.4546 0.6010 9 8 3.3982 -3.3995 0.7248 10 7 5.4315 -2.5558 1.0009 11 6 6.0728 -3.7715 1.5229 12 6 7.5308 -3.4061 1.8728 13 6 7.4682 -1.8669 2.0588 14 1 7.1209 -1.6081 3.0589 15 7 8.7721 -1.2497 1.7809 16 6 9.7968 -1.7430 2.7106 17 6 11.1699 -1.2185 2.2772 18 7 11.0937 0.2452 2.1551 19 6 12.0104 1.0510 2.7761 20 1 11.7423 2.0597 3.0538 21 6 13.2841 0.5713 3.0489 22 7 13.7239 -0.5105 2.4416 23 14 14.3740 1.4611 4.2776 24 1 14.1440 0.9063 5.6358 25 1 15.7985 1.2749 3.9015 26 1 14.0459 2.9094 4.2724 27 6 10.0066 0.8206 1.3486 28 6 8.6793 0.2159 1.8187 29 6 6.4260 -1.4677 0.9814 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6959 -2.0072 0.0005 34 1 5.2407 -1.1428 -1.4480 35 1 3.7117 -1.8273 -2.0495 36 1 3.8768 -0.0677 -1.8381 37 1 5.5508 -4.1111 2.4175 38 1 6.0587 -4.5534 0.7636 39 1 7.8393 -3.8940 2.7974 40 1 8.2012 -3.6688 1.0546 41 1 9.5742 -1.3905 3.7178 42 1 9.8037 -2.8329 2.6995 43 1 11.4405 -1.6526 1.3147 44 1 11.9165 -1.4851 3.0252 45 1 14.6141 -0.8455 2.6319 46 1 10.1654 0.5825 0.2970 47 1 9.9840 1.9021 1.4829 48 1 7.8757 0.5466 1.1608 49 1 8.4718 0.5410 2.8382 50 1 6.8969 -1.4018 0.0006 51 1 5.9559 -0.5195 1.2419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502097701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:42 Heat of formation + Delta-G solvation = -55.973320 kcal Electronic energy + Delta-G solvation = -30427.927784 eV Core-core repulsion = 26362.142570 eV Total energy + Delta-G solvation = -4065.785214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.72185 -40.57754 -39.76330 -38.17798 -36.09878 -35.79882 -33.52168 -32.80126 -31.78397 -31.41976 -29.83373 -29.53888 -27.69171 -26.07135 -24.81686 -24.35420 -23.24793 -21.75795 -21.44824 -20.80213 -20.49971 -18.86617 -18.65898 -17.92084 -17.44742 -17.25630 -16.81039 -16.47818 -16.08010 -15.91132 -15.60502 -15.31470 -15.25787 -15.20667 -14.91935 -14.72557 -14.63520 -14.21672 -14.00281 -13.89447 -13.53619 -13.40887 -13.29705 -13.20546 -12.97608 -12.95989 -12.75101 -12.66625 -12.54237 -12.47026 -12.16610 -12.00654 -11.88621 -11.81037 -11.44253 -11.36973 -11.10594 -11.01936 -10.57597 -10.29788 -9.82673 -9.31401 -8.66489 -7.86643 -5.30890 1.31632 1.46973 1.48095 1.52830 1.56833 1.64938 2.27680 2.51215 2.86942 3.25950 3.29482 3.38780 3.70548 3.73876 3.83190 3.95765 4.03512 4.08320 4.19080 4.26030 4.35902 4.38744 4.49268 4.51772 4.58048 4.61142 4.64383 4.67094 4.69761 4.72221 4.76288 4.88830 4.89550 4.94705 5.03765 5.07095 5.09924 5.14604 5.20713 5.23531 5.29634 5.40873 5.62654 5.72805 6.12800 6.24101 6.28452 6.39211 6.46808 6.84915 7.15288 7.16656 7.86239 8.39066 9.19802 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.002341 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.285010 B =11957.278659 C =12900.120829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.509 3.491 3 O -0.592 6.592 4 N -0.711 5.711 5 C 0.128 3.872 6 H 0.104 0.896 7 C -0.151 4.151 8 C 0.531 3.469 9 O -0.567 6.567 10 N -0.608 5.608 11 C 0.113 3.887 12 C -0.116 4.116 13 C 0.069 3.931 14 H 0.052 0.948 15 N -0.523 5.523 16 C 0.054 3.946 17 C 0.185 3.815 18 N -0.615 5.615 19 C -0.261 4.261 20 H 0.066 0.934 21 C -0.051 4.051 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.270 1.270 27 C 0.144 3.856 28 C 0.052 3.948 29 C 0.109 3.891 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.417 0.583 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.017 0.983 42 H 0.087 0.913 43 H 0.001 0.999 44 H 0.056 0.944 45 H 0.250 0.750 46 H 0.020 0.980 47 H 0.057 0.943 48 H 0.097 0.903 49 H 0.023 0.977 50 H 0.093 0.907 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.880 -5.750 -4.868 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.298 3.702 3 O -0.472 6.472 4 N -0.366 5.366 5 C 0.019 3.981 6 H 0.121 0.879 7 C -0.209 4.209 8 C 0.319 3.681 9 O -0.446 6.446 10 N -0.341 5.341 11 C -0.009 4.009 12 C -0.154 4.154 13 C -0.040 4.040 14 H 0.070 0.930 15 N -0.248 5.248 16 C -0.075 4.075 17 C 0.059 3.941 18 N -0.340 5.340 19 C -0.391 4.391 20 H 0.083 0.917 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.794 3.206 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.195 1.195 27 C 0.019 3.981 28 C -0.077 4.077 29 C -0.013 4.013 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.256 0.744 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.036 0.964 42 H 0.105 0.895 43 H 0.019 0.981 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.038 0.962 47 H 0.076 0.924 48 H 0.115 0.885 49 H 0.041 0.959 50 H 0.111 0.889 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.636 -5.696 -5.278 25.831 hybrid contribution 0.865 0.252 1.445 1.703 sum -23.771 -5.444 -3.833 24.686 Atomic orbital electron populations 1.21904 0.87736 1.06199 1.06474 1.21633 0.92382 0.82323 0.73856 1.90724 1.71944 1.32812 1.51734 1.45969 1.05420 1.10177 1.75043 1.20709 0.82811 0.95334 0.99243 0.87854 1.22039 1.02498 1.03482 0.92913 1.20383 0.80502 0.89730 0.77479 1.90672 1.55381 1.41086 1.57478 1.48387 1.09532 1.13538 1.62688 1.22004 0.92462 0.87117 0.99363 1.22693 0.95073 0.93877 1.03765 1.22794 0.89002 0.95483 0.96744 0.92966 1.61949 1.04760 1.06403 1.51696 1.22567 0.92708 0.99674 0.92594 1.20642 0.93044 0.82736 0.97690 1.44421 1.30403 1.02334 1.56806 1.19512 0.91498 0.97322 1.30782 0.91656 1.25756 0.97677 0.99472 1.01764 1.70170 1.17840 1.26411 1.43630 0.85285 0.77640 0.78620 0.79008 1.21265 1.22188 1.19503 1.21123 0.87340 0.96313 0.93372 1.22516 0.98519 0.87245 0.99404 1.22494 0.88437 0.89858 1.00548 0.86799 0.87840 0.88591 0.74449 0.90037 0.91160 0.91042 0.91149 0.90503 0.88951 0.89326 0.96423 0.89463 0.98079 0.92569 0.94095 0.96211 0.92404 0.88487 0.95918 0.88900 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.30 71.23 0.73 -0.63 16 2 C 0.51 9.04 7.90 87.65 0.69 9.74 16 3 O -0.59 -15.87 16.76 -3.03 -0.05 -15.92 16 4 N -0.71 -11.74 5.03 -446.10 -2.24 -13.99 16 5 C 0.13 2.36 2.38 44.24 0.11 2.47 16 6 H 0.10 2.10 6.49 -2.39 -0.02 2.09 16 7 C -0.15 -2.41 9.43 71.98 0.68 -1.74 16 8 C 0.53 11.25 7.12 87.66 0.62 11.88 16 9 O -0.57 -14.67 16.21 -3.04 -0.05 -14.72 16 10 N -0.61 -11.95 3.32 -811.37 -2.70 -14.65 16 11 C 0.11 2.08 6.87 86.73 0.60 2.67 16 12 C -0.12 -2.19 5.32 31.78 0.17 -2.02 16 13 C 0.07 1.55 2.73 46.38 0.13 1.67 16 14 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 15 N -0.52 -15.55 4.52 -861.48 -3.90 -19.44 16 16 C 0.05 1.89 5.48 86.38 0.47 2.36 16 17 C 0.18 8.70 5.42 86.35 0.47 9.17 16 18 N -0.62 -30.54 3.04 -698.14 -2.12 -32.66 16 19 C -0.26 -14.25 9.63 84.03 0.81 -13.44 16 20 H 0.07 3.49 7.88 -2.91 -0.02 3.47 16 21 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 22 N -0.93 -54.73 11.12 21.65 0.24 -54.49 16 23 Si 0.97 44.64 29.59 68.60 2.03 46.67 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 C 0.14 5.78 6.69 86.35 0.58 6.36 16 28 C 0.05 1.63 5.48 86.38 0.47 2.10 16 29 C 0.11 2.07 4.51 86.93 0.39 2.46 16 30 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.42 5.82 7.72 -92.71 -0.72 5.10 16 34 H 0.08 1.20 6.99 -2.39 -0.02 1.18 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.59 7.94 -2.39 -0.02 1.57 16 40 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.09 2.64 6.85 -2.39 -0.02 2.62 16 43 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.06 3.00 6.10 -2.39 -0.01 2.99 16 45 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.06 2.25 7.95 -2.38 -0.02 2.24 16 48 H 0.10 2.37 6.80 -2.39 -0.02 2.36 16 49 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.09 1.74 7.61 -2.39 -0.02 1.72 16 51 H 0.09 1.50 6.75 -2.39 -0.02 1.49 16 Total: -1.00 -71.88 398.36 -1.24 -73.12 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.21 Total: 15.47 kcal Atomic # 6 Polarization: 23.27 SS G_CDS: 7.34 Total: 30.61 kcal Atomic # 7 Polarization: -124.50 SS G_CDS: -10.72 Total: -135.22 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.10 Total: -30.65 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.88 -1.24 -73.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502097701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.151 kcal (2) G-P(sol) polarization free energy of solvation -71.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds