Wall clock time and date at job start Tue Mar 31 2020 21:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47359 * 2 1 4 4 N 1.39938 * 125.75116 * 90.01749 * 3 2 1 5 5 C 1.30445 * 108.89361 * 180.02562 * 4 3 2 6 6 C 1.50705 * 125.98614 * 180.02562 * 5 4 3 7 7 C 1.41288 * 108.02685 * 0.02562 * 5 4 3 8 8 C 1.47430 * 126.41370 * 179.97438 * 7 5 4 9 9 O 1.21604 * 119.99528 * 90.03058 * 8 7 5 10 10 N 1.34770 * 120.00296 * 270.02335 * 8 7 5 11 11 C 1.46503 * 120.00000 * 0.02562 * 10 8 7 12 12 C 1.46503 * 120.00051 * 179.97438 * 10 8 7 13 13 C 1.53007 * 109.46770 * 90.00615 * 12 10 8 14 14 H 1.08999 * 109.47061 * 59.99952 * 13 12 10 15 15 O 1.42905 * 109.46721 * 299.99920 * 13 12 10 16 16 C 1.53000 * 109.46792 * 179.97438 * 13 12 10 17 17 N 1.46499 * 109.46964 * 184.99606 * 16 13 12 18 18 C 1.46504 * 120.00143 * 270.00335 * 17 16 13 19 19 C 1.36938 * 119.99755 * 90.00088 * 17 16 13 20 20 H 1.08001 * 119.99915 * 342.01390 * 19 17 16 21 21 C 1.38817 * 119.99930 * 161.74048 * 19 17 16 22 22 N 1.31618 * 119.99597 * 346.04174 * 21 19 17 23 23 Si 1.86795 * 119.99854 * 166.04246 * 21 19 17 24 24 H 1.48498 * 109.47014 * 60.00295 * 23 21 19 25 25 H 1.48500 * 109.46950 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47372 * 299.99778 * 23 21 19 27 27 C 1.34258 * 125.75504 * 270.32171 * 3 2 1 28 28 C 1.50697 * 126.29199 * 359.97438 * 27 3 2 29 29 H 1.09000 * 109.46615 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46998 * 299.99676 * 1 2 3 31 31 H 1.09000 * 109.47095 * 60.00182 * 1 2 3 32 32 H 1.09007 * 109.47498 * 240.00521 * 2 1 3 33 33 H 1.08994 * 109.47356 * 120.00171 * 2 1 3 34 34 H 1.08995 * 109.47187 * 269.96306 * 6 5 4 35 35 H 1.09006 * 109.46837 * 29.96407 * 6 5 4 36 36 H 1.08993 * 109.47008 * 149.96044 * 6 5 4 37 37 H 1.08991 * 109.47308 * 269.99774 * 11 10 8 38 38 H 1.09002 * 109.46751 * 30.00348 * 11 10 8 39 39 H 1.09004 * 109.46799 * 149.99512 * 11 10 8 40 40 H 1.08999 * 109.47368 * 330.00756 * 12 10 8 41 41 H 1.09005 * 109.47042 * 210.00165 * 12 10 8 42 42 H 0.96697 * 113.99797 * 299.99722 * 15 13 12 43 43 H 1.09001 * 109.47038 * 65.00349 * 16 13 12 44 44 H 1.08998 * 109.47347 * 305.00293 * 16 13 12 45 45 H 1.08996 * 109.46941 * 264.92590 * 18 17 16 46 46 H 1.08996 * 109.46831 * 24.92903 * 18 17 16 47 47 H 1.08998 * 109.47001 * 144.93111 * 18 17 16 48 48 H 0.97000 * 119.99826 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.47571 * 270.18311 * 28 27 3 50 50 H 1.08997 * 109.47307 * 30.19045 * 28 27 3 51 51 H 1.09011 * 109.47011 * 150.18292 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2913 2.1520 1.1357 5 6 2.7068 3.3292 0.7574 6 6 3.1078 4.4614 1.6676 7 6 2.7151 3.3568 -0.6552 8 6 3.1150 4.4925 -1.5060 9 8 4.2729 4.6101 -1.8583 10 7 2.1972 5.4003 -1.8933 11 6 0.8023 5.2588 -1.4685 12 6 2.5947 6.5292 -2.7383 13 6 2.4547 6.1380 -4.2109 14 1 1.4178 5.8750 -4.4199 15 8 3.2958 5.0164 -4.4877 16 6 2.8692 7.3172 -5.0933 17 7 2.6228 6.9855 -6.4988 18 6 3.6702 6.3393 -7.2935 19 6 1.4133 7.2796 -7.0697 20 1 0.5554 7.4791 -6.4447 21 6 1.2913 7.3267 -8.4517 22 7 2.3689 7.3640 -9.2065 23 14 -0.4021 7.3372 -9.2399 24 1 -1.1584 8.5266 -8.7723 25 1 -0.2602 7.3910 -10.7172 26 1 -1.1340 6.1031 -8.8571 27 6 2.2742 2.1229 -1.0895 28 6 2.1122 1.6875 -2.5231 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.2358 5.0770 1.8876 35 1 3.5100 4.0560 2.5962 36 1 3.8679 5.0697 1.1776 37 1 0.2575 4.6647 -2.2021 38 1 0.7664 4.7615 -0.4992 39 1 0.3452 6.2451 -1.3879 40 1 3.6316 6.7921 -2.5292 41 1 1.9531 7.3847 -2.5270 42 1 4.2348 5.1789 -4.3237 43 1 3.9298 7.5235 -4.9493 44 1 2.2875 8.1975 -4.8202 45 1 4.2299 7.0971 -7.8418 46 1 4.3454 5.7966 -6.6320 47 1 3.2146 5.6435 -7.9980 48 1 2.2837 7.3966 -10.1722 49 1 3.0411 1.2373 -2.8733 50 1 1.3059 0.9573 -2.5922 51 1 1.8724 2.5530 -3.1409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507708735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:23 Heat of formation + Delta-G solvation = 14.352058 kcal Electronic energy + Delta-G solvation = -30953.363393 eV Core-core repulsion = 26890.627715 eV Total energy + Delta-G solvation = -4062.735677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.66017 -39.38769 -37.11778 -35.23567 -35.16590 -34.44387 -32.59865 -31.35972 -31.08081 -29.65145 -28.04595 -27.39177 -26.87004 -25.77568 -25.31887 -23.67387 -22.26594 -21.07165 -20.48759 -19.58864 -18.96446 -17.28277 -16.85109 -16.58061 -16.01938 -15.70067 -15.43251 -14.93424 -14.77017 -14.53543 -14.49295 -14.08426 -13.69042 -13.56899 -13.48269 -13.28909 -13.21513 -13.05101 -12.80700 -12.73509 -12.62602 -12.47348 -12.31056 -12.13434 -12.00658 -11.78970 -11.73201 -11.39856 -11.03954 -10.85719 -10.82843 -10.66445 -10.44560 -10.23498 -10.00793 -9.82063 -9.75381 -9.54978 -9.31730 -8.56840 -8.53552 -8.28056 -6.66327 -5.65033 -3.07250 1.57599 2.14581 2.35197 2.77394 3.26971 3.41063 3.46664 3.47541 4.14256 4.37191 4.53557 4.54772 4.57254 4.76225 4.81428 4.86214 5.08546 5.13635 5.18119 5.19153 5.25205 5.27558 5.36966 5.39562 5.45697 5.51447 5.55380 5.61443 5.66057 5.67766 5.72762 5.80358 5.82265 5.91692 5.92419 6.09319 6.14649 6.38031 6.60885 6.68842 6.75858 6.82505 6.97480 7.50666 7.54240 7.57902 7.77517 7.90882 8.38060 8.42358 8.46093 9.30664 9.95250 10.42990 11.39361 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.002826 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.884533 B = 9905.301803 C =10640.166764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.361 5.361 4 N -0.300 5.300 5 C 0.108 3.892 6 C -0.075 4.075 7 C -0.277 4.277 8 C 0.606 3.394 9 O -0.533 6.533 10 N -0.601 5.601 11 C 0.085 3.915 12 C 0.081 3.919 13 C 0.072 3.928 14 H 0.092 0.908 15 O -0.548 6.548 16 C 0.126 3.874 17 N -0.595 5.595 18 C 0.171 3.829 19 C -0.252 4.252 20 H 0.067 0.933 21 C -0.001 4.001 22 N -0.909 5.909 23 Si 0.904 3.096 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.132 3.868 28 C -0.099 4.099 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.366 0.634 43 H 0.040 0.960 44 H 0.052 0.948 45 H 0.022 0.978 46 H 0.001 0.999 47 H 0.043 0.957 48 H 0.252 0.748 49 H 0.087 0.913 50 H 0.073 0.927 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.780 -11.451 21.645 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.141 5.141 4 N -0.121 5.121 5 C -0.059 4.059 6 C -0.134 4.134 7 C -0.292 4.292 8 C 0.392 3.608 9 O -0.410 6.410 10 N -0.333 5.333 11 C -0.058 4.058 12 C -0.042 4.042 13 C 0.008 3.992 14 H 0.110 0.890 15 O -0.352 6.352 16 C -0.003 4.003 17 N -0.317 5.317 18 C 0.026 3.974 19 C -0.382 4.382 20 H 0.085 0.915 21 C -0.199 4.199 22 N -0.554 5.554 23 Si 0.734 3.266 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.002 3.998 28 C -0.157 4.157 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.213 0.787 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.040 0.960 46 H 0.020 0.980 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.105 0.895 50 H 0.091 0.909 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.029 -12.544 22.074 25.569 hybrid contribution -0.499 0.674 -1.050 1.344 sum -3.528 -11.870 21.024 24.399 Atomic orbital electron populations 1.22197 0.94027 1.03233 1.03424 1.21728 0.95409 0.77697 1.04637 1.48311 1.50751 1.11974 1.03102 1.77051 1.23751 1.03941 1.07403 1.22251 0.97328 0.94157 0.92154 1.20229 1.01994 0.93483 0.97684 1.19820 1.19645 0.96199 0.93546 1.17178 0.84574 0.80679 0.78359 1.90725 1.18814 1.75184 1.56232 1.47668 1.08824 1.26259 1.50547 1.21693 0.81980 1.02221 0.99955 1.22411 1.01973 0.87831 0.91977 1.23210 0.95754 0.89608 0.90615 0.89019 1.86525 1.20688 1.37878 1.90142 1.21297 0.98148 0.94420 0.86424 1.43756 1.14039 1.68628 1.05242 1.20746 0.89350 0.95039 0.92229 1.19149 0.86841 1.42380 0.89819 0.91540 1.24911 0.96900 1.01462 0.96641 1.70108 1.26411 1.54938 1.03972 0.86346 0.84073 0.77892 0.78285 1.21073 1.21693 1.21238 1.21380 0.96718 0.90673 0.91008 1.20592 1.03199 1.03639 0.88300 0.90347 0.91518 0.91788 0.88720 0.88510 0.90297 0.90525 0.90279 0.92854 0.91470 0.91155 0.89897 0.90050 0.78744 0.94203 0.92975 0.96016 0.98024 0.93796 0.93818 0.89473 0.90850 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.24 37.16 0.38 -0.61 16 2 C 0.13 0.88 6.75 -4.04 -0.03 0.85 16 3 N -0.36 -3.95 3.58 -56.60 -0.20 -4.16 16 4 N -0.30 -3.79 12.50 33.90 0.42 -3.37 16 5 C 0.11 1.35 6.96 -82.02 -0.57 0.78 16 6 C -0.08 -0.73 10.28 36.01 0.37 -0.36 16 7 C -0.28 -3.77 4.11 -105.07 -0.43 -4.20 16 8 C 0.61 9.15 6.34 -12.52 -0.08 9.07 16 9 O -0.53 -9.73 15.47 -3.49 -0.05 -9.78 16 10 N -0.60 -8.03 2.83 -182.84 -0.52 -8.54 16 11 C 0.09 0.91 10.30 59.85 0.62 1.52 16 12 C 0.08 1.13 5.19 -4.04 -0.02 1.11 16 13 C 0.07 1.25 3.48 -26.73 -0.09 1.16 16 14 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 15 O -0.55 -10.42 11.07 -43.99 -0.49 -10.91 16 16 C 0.13 2.52 5.30 -4.04 -0.02 2.50 16 17 N -0.59 -15.13 2.89 -181.12 -0.52 -15.66 16 18 C 0.17 4.41 8.74 59.85 0.52 4.93 16 19 C -0.25 -6.98 9.70 -15.06 -0.15 -7.12 16 20 H 0.07 1.76 7.87 -52.49 -0.41 1.35 16 21 C 0.00 -0.04 5.10 -17.43 -0.09 -0.13 16 22 N -0.91 -27.05 10.49 55.49 0.58 -26.46 16 23 Si 0.90 22.06 29.58 -169.99 -5.03 17.03 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 C 0.13 1.60 7.01 -81.60 -0.57 1.03 16 28 C -0.10 -1.04 9.70 36.00 0.35 -0.69 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.49 7.64 -51.92 -0.40 0.10 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.80 8.01 -51.93 -0.42 0.39 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.68 6.64 -51.93 -0.34 0.33 16 39 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 40 H 0.08 1.20 7.42 -51.93 -0.39 0.81 16 41 H 0.08 0.96 7.89 -51.93 -0.41 0.55 16 42 H 0.37 6.58 8.44 45.56 0.38 6.96 16 43 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 44 H 0.05 1.00 8.04 -51.93 -0.42 0.59 16 45 H 0.02 0.60 7.46 -51.93 -0.39 0.21 16 46 H 0.00 0.03 7.22 -51.93 -0.37 -0.35 16 47 H 0.04 1.23 7.03 -51.93 -0.37 0.87 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.07 0.57 7.71 -51.93 -0.40 0.17 16 51 H 0.10 1.22 7.96 -51.92 -0.41 0.81 16 LS Contribution 415.80 15.07 6.27 6.27 Total: -1.00 -35.17 415.80 -7.46 -42.63 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -8.11 Total: 3.12 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 0.19 Total: 9.84 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.24 Total: -58.19 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.54 Total: -20.70 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.17 -7.46 -42.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507708735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.983 kcal (2) G-P(sol) polarization free energy of solvation -35.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds