Wall clock time and date at job start Tue Mar 31 2020 21:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47359 * 2 1 4 4 N 1.39938 * 125.75116 * 90.01749 * 3 2 1 5 5 C 1.30445 * 108.89361 * 180.02562 * 4 3 2 6 6 C 1.50705 * 125.98614 * 180.02562 * 5 4 3 7 7 C 1.41288 * 108.02685 * 0.02562 * 5 4 3 8 8 C 1.47430 * 126.41370 * 179.97438 * 7 5 4 9 9 O 1.21604 * 119.99528 * 90.03058 * 8 7 5 10 10 N 1.34770 * 120.00296 * 270.02335 * 8 7 5 11 11 C 1.46503 * 120.00000 * 0.02562 * 10 8 7 12 12 C 1.46503 * 120.00051 * 179.97438 * 10 8 7 13 13 C 1.53007 * 109.46770 * 90.00615 * 12 10 8 14 14 H 1.08999 * 109.47061 * 59.99952 * 13 12 10 15 15 O 1.42905 * 109.46721 * 299.99920 * 13 12 10 16 16 C 1.53000 * 109.46792 * 179.97438 * 13 12 10 17 17 N 1.46499 * 109.46964 * 184.99606 * 16 13 12 18 18 C 1.46504 * 120.00143 * 270.00335 * 17 16 13 19 19 C 1.36938 * 119.99755 * 90.00088 * 17 16 13 20 20 H 1.08001 * 119.99915 * 342.01390 * 19 17 16 21 21 C 1.38817 * 119.99930 * 161.74048 * 19 17 16 22 22 N 1.31618 * 119.99597 * 346.04174 * 21 19 17 23 23 Si 1.86795 * 119.99854 * 166.04246 * 21 19 17 24 24 H 1.48498 * 109.47014 * 60.00295 * 23 21 19 25 25 H 1.48500 * 109.46950 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47372 * 299.99778 * 23 21 19 27 27 C 1.34258 * 125.75504 * 270.32171 * 3 2 1 28 28 C 1.50697 * 126.29199 * 359.97438 * 27 3 2 29 29 H 1.09000 * 109.46615 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46998 * 299.99676 * 1 2 3 31 31 H 1.09000 * 109.47095 * 60.00182 * 1 2 3 32 32 H 1.09007 * 109.47498 * 240.00521 * 2 1 3 33 33 H 1.08994 * 109.47356 * 120.00171 * 2 1 3 34 34 H 1.08995 * 109.47187 * 269.96306 * 6 5 4 35 35 H 1.09006 * 109.46837 * 29.96407 * 6 5 4 36 36 H 1.08993 * 109.47008 * 149.96044 * 6 5 4 37 37 H 1.08991 * 109.47308 * 269.99774 * 11 10 8 38 38 H 1.09002 * 109.46751 * 30.00348 * 11 10 8 39 39 H 1.09004 * 109.46799 * 149.99512 * 11 10 8 40 40 H 1.08999 * 109.47368 * 330.00756 * 12 10 8 41 41 H 1.09005 * 109.47042 * 210.00165 * 12 10 8 42 42 H 0.96697 * 113.99797 * 299.99722 * 15 13 12 43 43 H 1.09001 * 109.47038 * 65.00349 * 16 13 12 44 44 H 1.08998 * 109.47347 * 305.00293 * 16 13 12 45 45 H 1.08996 * 109.46941 * 264.92590 * 18 17 16 46 46 H 1.08996 * 109.46831 * 24.92903 * 18 17 16 47 47 H 1.08998 * 109.47001 * 144.93111 * 18 17 16 48 48 H 0.97000 * 119.99826 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.47571 * 270.18311 * 28 27 3 50 50 H 1.08997 * 109.47307 * 30.19045 * 28 27 3 51 51 H 1.09011 * 109.47011 * 150.18292 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2913 2.1520 1.1357 5 6 2.7068 3.3292 0.7574 6 6 3.1078 4.4614 1.6676 7 6 2.7151 3.3568 -0.6552 8 6 3.1150 4.4925 -1.5060 9 8 4.2729 4.6101 -1.8583 10 7 2.1972 5.4003 -1.8933 11 6 0.8023 5.2588 -1.4685 12 6 2.5947 6.5292 -2.7383 13 6 2.4547 6.1380 -4.2109 14 1 1.4178 5.8750 -4.4199 15 8 3.2958 5.0164 -4.4877 16 6 2.8692 7.3172 -5.0933 17 7 2.6228 6.9855 -6.4988 18 6 3.6702 6.3393 -7.2935 19 6 1.4133 7.2796 -7.0697 20 1 0.5554 7.4791 -6.4447 21 6 1.2913 7.3267 -8.4517 22 7 2.3689 7.3640 -9.2065 23 14 -0.4021 7.3372 -9.2399 24 1 -1.1584 8.5266 -8.7723 25 1 -0.2602 7.3910 -10.7172 26 1 -1.1340 6.1031 -8.8571 27 6 2.2742 2.1229 -1.0895 28 6 2.1122 1.6875 -2.5231 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.2358 5.0770 1.8876 35 1 3.5100 4.0560 2.5962 36 1 3.8679 5.0697 1.1776 37 1 0.2575 4.6647 -2.2021 38 1 0.7664 4.7615 -0.4992 39 1 0.3452 6.2451 -1.3879 40 1 3.6316 6.7921 -2.5292 41 1 1.9531 7.3847 -2.5270 42 1 4.2348 5.1789 -4.3237 43 1 3.9298 7.5235 -4.9493 44 1 2.2875 8.1975 -4.8202 45 1 4.2299 7.0971 -7.8418 46 1 4.3454 5.7966 -6.6320 47 1 3.2146 5.6435 -7.9980 48 1 2.2837 7.3966 -10.1722 49 1 3.0411 1.2373 -2.8733 50 1 1.3059 0.9573 -2.5922 51 1 1.8724 2.5530 -3.1409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507708735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:22 Heat of formation + Delta-G solvation = -9.290517 kcal Electronic energy + Delta-G solvation = -30954.388611 eV Core-core repulsion = 26890.627715 eV Total energy + Delta-G solvation = -4063.760896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.55555 -40.54600 -38.64571 -36.71378 -36.05326 -35.85397 -33.44047 -33.22858 -31.95915 -31.05431 -28.96310 -28.24358 -28.08176 -27.76614 -26.65009 -24.55299 -23.62220 -22.36171 -21.99938 -20.41620 -20.00075 -18.76613 -18.27229 -17.75835 -17.19314 -16.84031 -16.71250 -16.38502 -16.10688 -15.92574 -15.39404 -15.27240 -15.02782 -14.74782 -14.58037 -14.39684 -14.25725 -14.08587 -13.95759 -13.74538 -13.70822 -13.42489 -13.21618 -13.10327 -12.99279 -12.90663 -12.76576 -12.72366 -12.62041 -12.47873 -12.27371 -12.17927 -11.97719 -11.91545 -11.79846 -11.74006 -11.20490 -10.88644 -10.54442 -10.15956 -9.56857 -9.48663 -8.69212 -7.77670 -5.22328 0.68345 1.36433 1.44153 1.47083 1.50643 1.56722 1.64572 2.22317 2.54124 3.33721 3.40765 3.52872 3.62481 3.75189 3.86931 3.94130 4.05896 4.08846 4.20524 4.28088 4.32160 4.33504 4.34632 4.52881 4.55728 4.60492 4.64010 4.70171 4.71330 4.73561 4.78346 4.84926 4.87825 4.94669 4.95110 4.97285 5.01594 5.07001 5.20311 5.31025 5.43742 5.51499 5.60854 5.62523 5.74927 5.96585 6.33867 6.45401 6.62279 6.96882 7.18169 7.27921 7.91956 8.35648 9.25387 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.002826 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.884533 B = 9905.301803 C =10640.166764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.356 5.356 4 N -0.317 5.317 5 C 0.101 3.899 6 C -0.073 4.073 7 C -0.304 4.304 8 C 0.607 3.393 9 O -0.573 6.573 10 N -0.597 5.597 11 C 0.084 3.916 12 C 0.091 3.909 13 C 0.086 3.914 14 H 0.075 0.925 15 O -0.563 6.563 16 C 0.123 3.877 17 N -0.612 5.612 18 C 0.189 3.811 19 C -0.258 4.258 20 H 0.077 0.923 21 C -0.062 4.062 22 N -0.944 5.944 23 Si 0.970 3.030 24 H -0.271 1.271 25 H -0.298 1.298 26 H -0.281 1.281 27 C 0.131 3.869 28 C -0.093 4.093 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.370 0.630 43 H 0.050 0.950 44 H 0.063 0.937 45 H -0.004 1.004 46 H 0.026 0.974 47 H 0.011 0.989 48 H 0.246 0.754 49 H 0.087 0.913 50 H 0.102 0.898 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 -12.089 23.457 26.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.005 4.005 3 N -0.136 5.136 4 N -0.139 5.139 5 C -0.065 4.065 6 C -0.132 4.132 7 C -0.318 4.318 8 C 0.394 3.606 9 O -0.452 6.452 10 N -0.328 5.328 11 C -0.058 4.058 12 C -0.032 4.032 13 C 0.024 3.976 14 H 0.093 0.907 15 O -0.368 6.368 16 C -0.004 4.004 17 N -0.335 5.335 18 C 0.044 3.956 19 C -0.388 4.388 20 H 0.095 0.905 21 C -0.256 4.256 22 N -0.591 5.591 23 Si 0.798 3.202 24 H -0.197 1.197 25 H -0.224 1.224 26 H -0.207 1.207 27 C -0.001 4.001 28 C -0.151 4.151 29 H 0.121 0.879 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.217 0.783 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.014 0.986 46 H 0.045 0.955 47 H 0.030 0.970 48 H 0.055 0.945 49 H 0.106 0.894 50 H 0.121 0.879 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.836 -13.188 23.958 27.772 hybrid contribution 0.059 0.811 -1.537 1.739 sum -4.777 -12.378 22.420 26.052 Atomic orbital electron populations 1.22150 0.92970 1.04560 1.02454 1.22141 0.96259 0.75912 1.06139 1.48645 1.49775 1.12875 1.02278 1.77005 1.24358 1.04188 1.08343 1.22618 0.97058 0.94752 0.92107 1.20293 1.02523 0.92875 0.97471 1.19847 1.21469 0.96498 0.94017 1.17436 0.84166 0.80964 0.78004 1.90694 1.20481 1.76168 1.57878 1.47705 1.09770 1.25609 1.49741 1.21839 0.80305 1.03672 1.00014 1.22233 1.02710 0.88789 0.89502 1.22905 0.94382 0.87852 0.92494 0.90663 1.86505 1.21156 1.38667 1.90470 1.21519 0.99116 0.95810 0.83965 1.43994 1.13394 1.68862 1.07259 1.20414 0.89381 0.93752 0.92033 1.19569 0.87997 1.40999 0.90226 0.90534 1.25740 1.00388 1.02074 0.97374 1.70287 1.28454 1.56742 1.03666 0.85298 0.79923 0.78284 0.76708 1.19703 1.22433 1.20693 1.21566 0.96162 0.90527 0.91823 1.20561 1.04292 1.03306 0.86980 0.87863 0.92877 0.92278 0.86658 0.87645 0.88486 0.89498 0.91132 0.93239 0.90870 0.88803 0.90203 0.87092 0.78296 0.93183 0.91830 0.98576 0.95549 0.96990 0.94525 0.89420 0.87933 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 10.24 71.98 0.74 -0.78 16 2 C 0.11 1.34 6.75 86.38 0.58 1.92 16 3 N -0.36 -7.26 3.58 -332.99 -1.19 -8.45 16 4 N -0.32 -7.64 12.50 -46.67 -0.58 -8.22 16 5 C 0.10 2.44 6.96 43.52 0.30 2.74 16 6 C -0.07 -1.32 10.28 71.24 0.73 -0.59 16 7 C -0.30 -8.05 4.11 -20.15 -0.08 -8.13 16 8 C 0.61 18.03 6.34 86.67 0.55 18.58 16 9 O -0.57 -21.01 15.47 4.33 0.07 -20.95 16 10 N -0.60 -15.14 2.83 -850.64 -2.41 -17.54 16 11 C 0.08 1.62 10.30 127.77 1.32 2.94 16 12 C 0.09 2.37 5.19 86.38 0.45 2.82 16 13 C 0.09 2.92 3.48 30.60 0.11 3.03 16 14 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 15 O -0.56 -21.26 11.07 -140.60 -1.56 -22.82 16 16 C 0.12 4.78 5.30 86.38 0.46 5.24 16 17 N -0.61 -31.12 2.89 -726.94 -2.10 -33.23 16 18 C 0.19 9.95 8.74 127.77 1.12 11.07 16 19 C -0.26 -14.18 9.70 84.03 0.81 -13.36 16 20 H 0.08 3.96 7.87 -2.91 -0.02 3.94 16 21 C -0.06 -3.51 5.10 84.86 0.43 -3.08 16 22 N -0.94 -57.43 10.49 21.65 0.23 -57.21 16 23 Si 0.97 45.45 29.58 68.60 2.03 47.48 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 C 0.13 3.03 7.01 42.14 0.30 3.33 16 28 C -0.09 -1.86 9.70 71.23 0.69 -1.16 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.12 0.87 7.64 -2.38 -0.02 0.86 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.07 1.39 8.01 -2.39 -0.02 1.37 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.34 6.64 -2.39 -0.02 1.33 16 39 H 0.09 1.37 7.89 -2.38 -0.02 1.35 16 40 H 0.08 2.19 7.42 -2.39 -0.02 2.17 16 41 H 0.11 2.25 7.89 -2.38 -0.02 2.24 16 42 H 0.37 13.27 8.44 -74.06 -0.63 12.65 16 43 H 0.05 1.84 8.07 -2.39 -0.02 1.82 16 44 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 45 H 0.00 -0.23 7.46 -2.39 -0.02 -0.25 16 46 H 0.03 1.21 7.22 -2.39 -0.02 1.20 16 47 H 0.01 0.66 7.03 -2.39 -0.02 0.65 16 48 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 49 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.10 1.37 7.71 -2.39 -0.02 1.35 16 51 H 0.07 1.83 7.96 -2.38 -0.02 1.81 16 Total: -1.00 -77.04 415.80 3.27 -73.77 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.29 Total: 22.61 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 8.50 Total: 24.56 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -6.06 Total: -124.65 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -1.49 Total: -43.76 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -77.04 3.27 -73.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507708735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.476 kcal (2) G-P(sol) polarization free energy of solvation -77.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds