Wall clock time and date at job start Tue Mar 31 2020 22:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 120.00174 * 2 1 4 4 O 1.21275 * 120.00079 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99742 * 359.97438 * 3 2 1 6 6 H 1.09009 * 110.33353 * 320.80145 * 5 3 2 7 7 C 1.54905 * 110.37641 * 83.17284 * 5 3 2 8 8 C 1.55138 * 101.65498 * 155.89936 * 7 5 3 9 9 C 1.54323 * 103.01862 * 324.34668 * 8 7 5 10 10 N 1.47441 * 107.23040 * 22.28654 * 9 8 7 11 11 C 1.46898 * 110.99984 * 123.25769 * 10 9 8 12 12 C 1.46507 * 120.00006 * 179.97438 * 2 1 3 13 13 C 1.53775 * 113.60955 * 43.26234 * 12 2 1 14 14 C 1.53782 * 87.08148 * 220.01418 * 13 12 2 15 15 N 1.46903 * 113.61723 * 139.97816 * 14 13 12 16 16 C 1.46897 * 110.99633 * 107.50490 * 15 14 13 17 17 C 1.50705 * 109.47001 * 180.02562 * 16 15 14 18 18 O 1.21292 * 119.99607 * 0.02562 * 17 16 15 19 19 N 1.34769 * 120.00076 * 180.02562 * 17 16 15 20 20 C 1.37103 * 120.00253 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99277 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00295 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00070 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99864 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47010 * 90.00226 * 24 22 20 26 26 H 1.48504 * 109.46958 * 209.99570 * 24 22 20 27 27 H 1.48497 * 109.47277 * 329.99631 * 24 22 20 28 28 C 1.53773 * 113.61691 * 305.76546 * 12 2 1 29 29 H 1.09000 * 109.47219 * 265.20657 * 1 2 3 30 30 H 1.08997 * 109.46971 * 145.21183 * 1 2 3 31 31 H 1.09000 * 109.47254 * 25.20639 * 1 2 3 32 32 H 1.08999 * 110.99113 * 273.98964 * 7 5 3 33 33 H 1.09000 * 110.98798 * 37.80732 * 7 5 3 34 34 H 1.08999 * 110.70654 * 205.96909 * 8 7 5 35 35 H 1.09001 * 110.70504 * 82.73080 * 8 7 5 36 36 H 1.08998 * 109.89022 * 262.87657 * 9 8 7 37 37 H 1.08998 * 110.02102 * 141.76703 * 9 8 7 38 38 H 1.08993 * 109.47223 * 299.15131 * 11 10 9 39 39 H 1.09004 * 109.47177 * 59.15969 * 11 10 9 40 40 H 1.09005 * 109.47224 * 179.15265 * 11 10 9 41 41 H 1.09000 * 112.84605 * 174.55884 * 12 2 1 42 42 H 1.09001 * 113.61708 * 334.56337 * 13 12 2 43 43 H 1.08999 * 113.61492 * 105.47051 * 13 12 2 44 44 H 1.09001 * 113.61895 * 270.88901 * 14 13 12 45 45 H 1.00896 * 111.00297 * 231.46335 * 15 14 13 46 46 H 1.08992 * 109.47111 * 300.00048 * 16 15 14 47 47 H 1.09001 * 109.47036 * 60.00518 * 16 15 14 48 48 H 0.96995 * 120.00028 * 0.02562 * 19 17 16 49 49 H 0.96998 * 119.99949 * 179.97438 * 23 22 20 50 50 H 1.09006 * 113.60880 * 254.52951 * 28 12 2 51 51 H 1.08998 * 113.61850 * 25.42647 * 28 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.5103 2.4041 -0.6469 7 6 0.9657 2.8534 1.4410 8 6 0.8140 4.3931 1.3266 9 6 1.9362 4.7806 0.3406 10 7 2.2661 3.5749 -0.4414 11 6 2.1171 3.8243 -1.8813 12 6 2.1975 -1.2688 0.0006 13 6 1.6168 -2.3156 -0.9646 14 6 1.8963 -3.3621 0.1270 15 7 0.8341 -4.3675 0.2642 16 6 1.2685 -5.6676 -0.2639 17 6 0.1550 -6.6710 -0.1069 18 8 -0.8970 -6.3358 0.3951 19 7 0.3283 -7.9407 -0.5242 20 6 -0.6848 -8.8534 -0.3818 21 1 -1.6216 -8.5549 0.0652 22 6 -0.5060 -10.1626 -0.8116 23 7 0.6341 -10.5259 -1.3550 24 14 -1.8862 -11.4063 -0.6169 25 1 -2.7435 -11.3881 -1.8293 26 1 -1.3087 -12.7628 -0.4395 27 1 -2.7034 -11.0567 0.5726 28 6 1.7924 -2.2135 1.1442 29 1 -0.3634 -0.0859 1.0241 30 1 -0.3633 -0.8440 -0.5863 31 1 -0.3634 0.9298 -0.4377 32 1 0.0176 2.3865 1.7080 33 1 1.7443 2.5898 2.1569 34 1 0.9705 4.8688 2.2947 35 1 -0.1631 4.6550 0.9207 36 1 2.8143 5.1170 0.8917 37 1 1.5911 5.5715 -0.3253 38 1 1.0837 4.0944 -2.0983 39 1 2.7761 4.6399 -2.1790 40 1 2.3810 2.9234 -2.4353 41 1 3.2751 -1.1353 -0.0947 42 1 0.5563 -2.1757 -1.1741 43 1 2.2126 -2.4559 -1.8666 44 1 2.8916 -3.8022 0.0655 45 1 0.5349 -4.4489 1.2244 46 1 1.5189 -5.5656 -1.3197 47 1 2.1455 -6.0086 0.2863 48 1 1.1698 -8.2088 -0.9253 49 1 0.7590 -11.4399 -1.6547 50 1 2.5299 -2.2712 1.9448 51 1 0.7799 -2.0457 1.5114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508124767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:23 Heat of formation + Delta-G solvation = -52.699144 kcal Electronic energy + Delta-G solvation = -29253.247375 eV Core-core repulsion = 25187.604140 eV Total energy + Delta-G solvation = -4065.643235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63873 -40.40223 -39.85038 -38.60363 -36.31960 -35.84096 -34.20517 -33.22589 -33.00758 -30.51365 -28.56471 -27.86757 -26.71513 -26.68564 -26.07501 -24.62752 -22.56768 -21.96994 -21.16921 -20.40320 -19.93096 -19.75235 -18.62669 -17.86625 -17.33020 -16.87200 -16.84900 -16.53416 -16.31381 -16.15130 -15.91207 -15.69138 -15.27966 -15.07750 -14.68445 -14.40194 -14.29647 -14.18858 -14.04723 -13.60439 -13.51028 -13.41860 -13.25918 -13.12035 -13.06033 -12.86702 -12.76472 -12.49623 -12.41630 -12.29620 -12.14028 -12.11466 -12.07876 -11.81006 -11.66935 -11.50952 -11.48061 -10.71041 -10.32261 -10.01227 -9.59184 -9.33012 -9.27177 -8.46205 -5.95131 1.38616 1.42355 1.55125 1.59905 1.90046 2.05794 2.29758 2.94679 3.03854 3.21238 3.42981 3.48314 3.61097 3.63731 3.69835 3.84722 3.90604 3.94400 4.03061 4.14740 4.30834 4.32961 4.40798 4.43816 4.46628 4.52043 4.56026 4.60886 4.64413 4.75562 4.77327 4.83540 4.87257 4.92346 4.95657 4.96423 5.01630 5.05513 5.09742 5.21737 5.28247 5.41403 5.59250 5.87306 5.92991 6.05171 6.14179 6.41060 6.46277 6.60345 7.12828 7.23907 7.56749 8.11592 8.71139 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034274 B = 0.001664 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.740625 B =16820.165476 C =17079.617117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.601 5.601 3 C 0.516 3.484 4 O -0.570 6.570 5 C 0.055 3.945 6 H 0.098 0.902 7 C -0.114 4.114 8 C -0.132 4.132 9 C 0.041 3.959 10 N -0.545 5.545 11 C 0.024 3.976 12 C 0.124 3.876 13 C -0.131 4.131 14 C 0.061 3.939 15 N -0.663 5.663 16 C 0.064 3.936 17 C 0.439 3.561 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.140 4.140 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.347 0.653 46 H 0.101 0.899 47 H 0.066 0.934 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.075 0.925 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 29.620 2.274 29.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.333 5.333 3 C 0.305 3.695 4 O -0.447 6.447 5 C -0.056 4.056 6 H 0.116 0.884 7 C -0.152 4.152 8 C -0.170 4.170 9 C -0.086 4.086 10 N -0.270 5.270 11 C -0.124 4.124 12 C 0.019 3.981 13 C -0.170 4.170 14 C -0.049 4.049 15 N -0.295 5.295 16 C -0.069 4.069 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.179 4.179 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.166 0.834 46 H 0.119 0.881 47 H 0.084 0.916 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.927 29.721 2.022 29.852 hybrid contribution -0.058 -1.296 0.159 1.307 sum 1.869 28.425 2.181 28.570 Atomic orbital electron populations 1.22116 0.77712 1.04489 1.03415 1.47880 1.07976 1.04871 1.72552 1.20998 0.87698 0.85804 0.75045 1.90649 1.15903 1.87654 1.50539 1.22627 0.93898 0.89313 0.99767 0.88426 1.22665 1.02510 0.97264 0.92774 1.22786 0.99226 0.94239 1.00770 1.22900 0.98412 0.91259 0.96046 1.62962 1.53347 1.05441 1.05275 1.22532 1.00750 1.01857 0.87246 1.22276 0.97162 0.81446 0.97190 1.23503 1.02495 0.93727 0.97301 1.22874 0.93642 0.90592 0.97820 1.60205 1.37082 1.05638 1.26573 1.21601 0.94083 0.88715 1.02482 1.20862 0.90197 0.83463 0.82861 1.90483 1.30639 1.79651 1.50064 1.41948 1.16143 1.08398 1.54629 1.19683 0.96231 0.90828 1.39626 0.90205 1.26053 1.00080 0.99247 0.95968 1.69677 1.25210 1.20291 1.40989 0.84916 0.77554 0.77036 0.78755 1.19666 1.19615 1.19687 1.23589 1.03178 0.94151 0.96950 0.91020 0.90353 0.88919 0.87787 0.91991 0.89127 0.89304 0.91134 0.90804 0.93543 0.90398 0.93065 0.87898 0.88628 0.91165 0.89838 0.83360 0.88105 0.91621 0.77024 0.91331 0.90585 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 9.35 127.77 1.20 2.01 16 2 N -0.60 -11.43 3.09 -819.67 -2.53 -13.96 16 3 C 0.52 11.76 6.96 87.66 0.61 12.37 16 4 O -0.57 -18.32 16.05 -3.01 -0.05 -18.37 16 5 C 0.06 0.87 2.00 44.64 0.09 0.96 16 6 H 0.10 1.11 5.93 -2.38 -0.01 1.10 16 7 C -0.11 -1.33 6.41 31.98 0.21 -1.12 16 8 C -0.13 -1.08 6.94 31.78 0.22 -0.86 16 9 C 0.04 0.49 6.90 86.65 0.60 1.09 16 10 N -0.55 -9.68 4.69 -891.01 -4.18 -13.86 16 11 C 0.02 0.35 9.12 127.69 1.17 1.51 16 12 C 0.12 2.61 4.24 45.51 0.19 2.80 16 13 C -0.13 -2.81 7.40 31.12 0.23 -2.58 16 14 C 0.06 1.39 4.14 45.44 0.19 1.58 16 15 N -0.66 -19.90 6.18 -492.85 -3.05 -22.94 16 16 C 0.06 2.15 6.01 85.56 0.51 2.66 16 17 C 0.44 20.66 7.82 87.66 0.69 21.34 16 18 O -0.62 -33.93 15.78 -3.07 -0.05 -33.98 16 19 N -0.57 -29.40 5.29 -306.99 -1.62 -31.02 16 20 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 23 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 24 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 28 C -0.14 -2.77 7.24 31.12 0.23 -2.55 16 29 H 0.07 0.76 7.99 -2.39 -0.02 0.74 16 30 H 0.08 1.10 5.84 -2.39 -0.01 1.09 16 31 H 0.09 0.75 5.77 -2.39 -0.01 0.74 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.99 8.05 -2.39 -0.02 0.97 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.64 7.58 -2.39 -0.02 0.63 16 38 H 0.05 0.47 8.09 -2.39 -0.02 0.46 16 39 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.10 2.54 7.18 -2.39 -0.02 2.53 16 42 H 0.10 2.11 5.95 -2.39 -0.01 2.10 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.80 7.87 -2.39 -0.02 1.78 16 45 H 0.35 10.88 8.25 -89.70 -0.74 10.14 16 46 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 47 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 48 H 0.40 19.32 7.90 -92.71 -0.73 18.58 16 49 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 50 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 51 H 0.10 1.89 7.36 -2.39 -0.02 1.87 16 Total: -1.00 -74.43 405.35 -2.29 -76.72 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -0.52 Total: 41.22 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 7.40 Total: 20.82 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -11.10 Total: -131.23 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.10 Total: -52.35 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.43 -2.29 -76.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508124767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.023 kcal (2) G-P(sol) polarization free energy of solvation -74.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds