Wall clock time and date at job start Tue Mar 31 2020 22:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47207 * 2 1 4 4 C 1.42897 * 113.99981 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47259 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47474 * 179.97438 * 5 4 3 7 7 C 1.36741 * 127.13480 * 275.47984 * 6 5 4 8 8 C 1.50700 * 126.34951 * 0.05019 * 7 6 5 9 9 H 1.09002 * 109.86604 * 343.99474 * 8 7 6 10 10 C 1.54103 * 109.87959 * 105.00152 * 8 7 6 11 11 C 1.54811 * 104.18685 * 121.45155 * 10 8 7 12 12 C 1.54998 * 102.09057 * 20.88194 * 11 10 8 13 13 O 1.43745 * 109.87807 * 222.83430 * 8 7 6 14 14 N 1.30299 * 107.30246 * 180.02562 * 7 6 5 15 15 N 1.28530 * 110.05532 * 359.97438 * 14 7 6 16 16 C 1.31220 * 109.85623 * 359.97438 * 15 14 7 17 17 N 1.38585 * 126.46920 * 180.26457 * 16 15 14 18 18 C 1.46897 * 110.99668 * 293.63351 * 17 16 15 19 19 C 1.46900 * 110.99994 * 57.58867 * 17 16 15 20 20 H 1.09002 * 109.47284 * 300.00099 * 19 17 16 21 21 C 1.53001 * 109.46674 * 60.00214 * 19 17 16 22 22 C 1.50701 * 109.46877 * 180.02562 * 19 17 16 23 23 H 1.07999 * 119.99795 * 359.97438 * 22 19 17 24 24 C 1.37873 * 119.99981 * 180.02562 * 22 19 17 25 25 N 1.31515 * 119.99918 * 359.97438 * 24 22 19 26 26 Si 1.86796 * 120.00313 * 180.02562 * 24 22 19 27 27 H 1.48497 * 109.46976 * 59.99464 * 26 24 22 28 28 H 1.48494 * 109.47515 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.46746 * 299.99893 * 26 24 22 30 30 H 1.09000 * 109.47224 * 59.99530 * 1 2 3 31 31 H 1.08993 * 109.47268 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46748 * 300.00121 * 1 2 3 33 33 H 1.08998 * 109.46779 * 240.00334 * 2 1 3 34 34 H 1.09000 * 109.47224 * 120.00470 * 2 1 3 35 35 H 1.08996 * 109.47533 * 60.00295 * 4 3 2 36 36 H 1.08998 * 109.47205 * 300.00269 * 4 3 2 37 37 H 1.09003 * 109.46993 * 60.00193 * 5 4 3 38 38 H 1.08998 * 109.47390 * 300.00350 * 5 4 3 39 39 H 1.08998 * 110.48973 * 240.13036 * 10 8 7 40 40 H 1.09001 * 110.48557 * 2.77920 * 10 8 7 41 41 H 1.08997 * 110.90453 * 139.07415 * 11 10 8 42 42 H 1.08988 * 110.91008 * 262.65225 * 11 10 8 43 43 H 1.09002 * 110.61854 * 81.47233 * 12 11 10 44 44 H 1.08999 * 110.61875 * 204.47269 * 12 11 10 45 45 H 1.08997 * 109.47185 * 65.58851 * 18 17 16 46 46 H 1.09001 * 109.46963 * 185.58052 * 18 17 16 47 47 H 1.08994 * 109.47625 * 305.58732 * 18 17 16 48 48 H 1.09002 * 109.47359 * 59.99931 * 21 19 17 49 49 H 1.09004 * 109.46464 * 180.02562 * 21 19 17 50 50 H 1.09000 * 109.47113 * 299.99381 * 21 19 17 51 51 H 0.97000 * 120.00527 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 7 5.2859 3.0540 -0.0012 7 6 6.1170 3.0159 1.0840 8 6 5.7008 2.8441 2.5222 9 1 4.6323 3.0337 2.6238 10 6 6.0265 1.4138 2.9946 11 6 6.9752 1.6194 4.2006 12 6 6.6593 3.0785 4.6172 13 8 6.4425 3.7491 3.3571 14 7 7.3355 3.1552 0.6440 15 7 7.3309 3.2772 -0.6354 16 6 6.0990 3.2213 -1.0840 17 7 5.6997 3.3108 -2.4081 18 6 5.9747 4.6475 -2.9516 19 6 6.3399 2.2693 -3.2226 20 1 7.4226 2.3855 -3.1755 21 6 5.9510 0.8906 -2.6849 22 6 5.8830 2.3985 -4.6528 23 1 5.1864 3.1762 -4.9290 24 6 6.3535 1.5232 -5.6085 25 7 7.2014 0.5758 -5.2721 26 14 5.7878 1.6837 -7.3815 27 1 6.1666 3.0216 -7.9027 28 1 6.4348 0.6309 -8.2049 29 1 4.3125 1.5267 -7.4465 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8333 0.9767 -0.8908 36 1 3.8340 0.9763 0.8891 37 1 3.4231 3.4221 0.8889 38 1 3.4223 3.4217 -0.8911 39 1 5.1179 0.8992 3.3073 40 1 6.5293 0.8563 2.2044 41 1 6.7366 0.9247 5.0060 42 1 8.0171 1.5178 3.8976 43 1 5.7598 3.1161 5.2317 44 1 7.5051 3.5185 5.1456 45 1 7.0518 4.8109 -2.9867 46 1 5.5630 4.7222 -3.9582 47 1 5.5134 5.4012 -2.3136 48 1 4.8682 0.7744 -2.7320 49 1 6.4264 0.1178 -3.2890 50 1 6.2818 0.7975 -1.6505 51 1 7.5321 -0.0403 -5.9443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516746281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:48 Heat of formation + Delta-G solvation = 3.084856 kcal Electronic energy + Delta-G solvation = -31480.672924 eV Core-core repulsion = 27417.448665 eV Total energy + Delta-G solvation = -4063.224260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62054 -39.42559 -38.24957 -37.01301 -35.05340 -32.97981 -32.31157 -31.67696 -30.93791 -29.43446 -28.79903 -27.91980 -25.57785 -24.38685 -23.75112 -23.38621 -22.93262 -21.84890 -21.66650 -20.17270 -19.48884 -17.45329 -16.72620 -16.50670 -16.43213 -16.30389 -16.01385 -15.58557 -15.38084 -14.97923 -14.51746 -14.34297 -14.21793 -13.80298 -13.66791 -13.62060 -13.10839 -12.62961 -12.42820 -12.34766 -12.21916 -12.05808 -11.94826 -11.70412 -11.46078 -11.36112 -11.30955 -11.17103 -11.12293 -10.96803 -10.90920 -10.80798 -10.37826 -10.32719 -10.15364 -10.13756 -9.88533 -9.82904 -9.70039 -9.12995 -8.54411 -8.47905 -7.74668 -6.09549 -4.16250 2.02250 2.38335 3.24658 3.28138 3.33007 3.34915 3.56685 3.86324 4.19754 4.32174 4.45511 4.58509 4.64005 4.68125 4.79225 4.83709 4.88841 4.90475 5.06972 5.11094 5.16575 5.22773 5.25017 5.34636 5.48248 5.49397 5.52996 5.57437 5.68075 5.73068 5.75769 5.78426 5.90660 5.93703 5.95076 6.15176 6.32748 6.40947 6.60217 6.66140 6.68300 6.82268 6.89081 6.99181 7.08863 7.35327 7.60632 7.71495 7.87844 8.14509 8.42081 8.87034 9.21763 9.48700 10.97335 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009825 B = 0.003982 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.193447 B = 7030.832620 C = 8862.367214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.385 6.385 4 C 0.049 3.951 5 C 0.118 3.882 6 N -0.464 5.464 7 C 0.150 3.850 8 C 0.177 3.823 9 H 0.082 0.918 10 C -0.145 4.145 11 C -0.151 4.151 12 C 0.046 3.954 13 O -0.354 6.354 14 N -0.262 5.262 15 N -0.317 5.317 16 C 0.390 3.610 17 N -0.473 5.473 18 C 0.050 3.950 19 C 0.226 3.774 20 H 0.023 0.977 21 C -0.129 4.129 22 C -0.512 4.512 23 H 0.066 0.934 24 C 0.064 3.936 25 N -0.888 5.888 26 Si 0.901 3.099 27 H -0.276 1.276 28 H -0.287 1.287 29 H -0.276 1.276 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.036 0.964 46 H 0.091 0.909 47 H 0.044 0.956 48 H 0.031 0.969 49 H 0.092 0.908 50 H 0.000 1.000 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 -0.422 17.625 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.304 6.304 4 C -0.029 4.029 5 C -0.006 4.006 6 N -0.161 5.161 7 C -0.117 4.117 8 C 0.116 3.884 9 H 0.100 0.900 10 C -0.184 4.184 11 C -0.188 4.188 12 C -0.030 4.030 13 O -0.271 6.271 14 N -0.103 5.103 15 N -0.160 5.160 16 C 0.035 3.965 17 N -0.201 5.201 18 C -0.097 4.097 19 C 0.122 3.878 20 H 0.040 0.960 21 C -0.188 4.188 22 C -0.551 4.551 23 H 0.085 0.915 24 C -0.139 4.139 25 N -0.527 5.527 26 Si 0.728 3.272 27 H -0.201 1.201 28 H -0.213 1.213 29 H -0.202 1.202 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.055 0.945 46 H 0.109 0.891 47 H 0.063 0.937 48 H 0.050 0.950 49 H 0.111 0.889 50 H 0.019 0.981 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.965 -0.159 17.443 19.613 hybrid contribution -0.842 -0.529 -0.961 1.383 sum -9.808 -0.688 16.482 19.192 Atomic orbital electron populations 1.21738 0.93581 1.02256 1.03147 1.22480 0.95536 0.83340 1.00438 1.87771 1.20003 1.27008 1.95589 1.22767 0.81921 0.96282 1.01890 1.21453 0.76329 0.96899 1.05916 1.46148 1.07952 1.55184 1.06774 1.24168 0.87830 1.08989 0.90737 1.20610 0.95167 0.89995 0.82590 0.89987 1.22986 1.00562 0.95715 0.99142 1.23115 1.01163 0.97129 0.97433 1.23601 1.01007 0.91876 0.86555 1.88998 1.75555 1.37968 1.24603 1.73978 1.17113 1.15544 1.03652 1.74794 1.17186 1.21328 1.02725 1.22898 0.85006 0.99000 0.89610 1.59277 1.59133 1.07161 0.94525 1.22212 1.00076 0.86677 1.00767 1.19416 0.93167 0.84925 0.90303 0.95950 1.21836 0.99299 1.01130 0.96496 1.21012 1.27392 1.15599 0.91058 0.91548 1.24902 0.94838 0.95029 0.99109 1.69885 1.31143 1.17544 1.34078 0.86514 0.78829 0.77835 0.83976 1.20127 1.21282 1.20186 0.91608 0.91076 0.91986 0.92840 0.93507 0.91076 0.93283 0.88889 0.86690 0.90070 0.89677 0.90034 0.89784 0.92014 0.88537 0.94545 0.89089 0.93725 0.94952 0.88933 0.98063 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.06 0.62 6.66 37.16 0.25 0.87 16 3 O -0.39 -4.96 10.34 -35.23 -0.36 -5.32 16 4 C 0.05 0.66 6.26 37.16 0.23 0.89 16 5 C 0.12 1.64 6.28 -4.04 -0.03 1.62 16 6 N -0.46 -8.08 2.81 -114.08 -0.32 -8.41 16 7 C 0.15 2.60 6.75 -154.01 -1.04 1.56 16 8 C 0.18 2.30 3.83 -27.31 -0.10 2.20 16 9 H 0.08 0.89 7.13 -51.93 -0.37 0.52 16 10 C -0.15 -1.54 6.63 -25.20 -0.17 -1.71 16 11 C -0.15 -1.35 7.15 -24.72 -0.18 -1.53 16 12 C 0.05 0.43 7.72 38.21 0.29 0.72 16 13 O -0.35 -4.91 11.17 -35.23 -0.39 -5.31 16 14 N -0.26 -5.54 12.18 32.99 0.40 -5.14 16 15 N -0.32 -7.34 12.09 30.31 0.37 -6.97 16 16 C 0.39 8.22 5.05 -318.87 -1.61 6.62 16 17 N -0.47 -10.34 4.63 -176.09 -0.81 -11.16 16 18 C 0.05 1.00 9.15 60.06 0.55 1.55 16 19 C 0.23 5.72 1.99 -68.86 -0.14 5.58 16 20 H 0.02 0.66 8.06 -51.93 -0.42 0.24 16 21 C -0.13 -3.17 8.59 37.16 0.32 -2.85 16 22 C -0.51 -13.51 7.95 -34.44 -0.27 -13.78 16 23 H 0.07 1.70 6.39 -52.49 -0.34 1.37 16 24 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 25 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 26 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 1.15 6.90 -51.93 -0.36 0.79 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.05 7.34 -51.93 -0.38 0.66 16 38 H 0.11 1.69 8.11 -51.93 -0.42 1.27 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.85 8.14 -51.94 -0.42 0.43 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 1.79 6.29 -51.93 -0.33 1.46 16 47 H 0.04 0.78 8.11 -51.93 -0.42 0.36 16 48 H 0.03 0.75 7.19 -51.93 -0.37 0.38 16 49 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 50 H 0.00 0.01 7.22 -51.93 -0.38 -0.37 16 51 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 407.48 15.07 6.14 6.14 Total: -1.00 -32.16 407.48 -9.68 -41.84 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.70 Total: 0.46 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -1.60 Total: 2.46 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.26 Total: -55.95 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.76 Total: -10.63 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.16 -9.68 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516746281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.929 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds