Wall clock time and date at job start Tue Mar 31 2020 22:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47207 * 2 1 4 4 C 1.42897 * 113.99981 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47259 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47474 * 179.97438 * 5 4 3 7 7 C 1.36741 * 127.13480 * 275.47984 * 6 5 4 8 8 C 1.50700 * 126.34951 * 0.05019 * 7 6 5 9 9 H 1.09002 * 109.86604 * 343.99474 * 8 7 6 10 10 C 1.54103 * 109.87959 * 105.00152 * 8 7 6 11 11 C 1.54811 * 104.18685 * 121.45155 * 10 8 7 12 12 C 1.54998 * 102.09057 * 20.88194 * 11 10 8 13 13 O 1.43745 * 109.87807 * 222.83430 * 8 7 6 14 14 N 1.30299 * 107.30246 * 180.02562 * 7 6 5 15 15 N 1.28530 * 110.05532 * 359.97438 * 14 7 6 16 16 C 1.31220 * 109.85623 * 359.97438 * 15 14 7 17 17 N 1.38585 * 126.46920 * 180.26457 * 16 15 14 18 18 C 1.46897 * 110.99668 * 293.63351 * 17 16 15 19 19 C 1.46900 * 110.99994 * 57.58867 * 17 16 15 20 20 H 1.09002 * 109.47284 * 300.00099 * 19 17 16 21 21 C 1.53001 * 109.46674 * 60.00214 * 19 17 16 22 22 C 1.50701 * 109.46877 * 180.02562 * 19 17 16 23 23 H 1.07999 * 119.99795 * 359.97438 * 22 19 17 24 24 C 1.37873 * 119.99981 * 180.02562 * 22 19 17 25 25 N 1.31515 * 119.99918 * 359.97438 * 24 22 19 26 26 Si 1.86796 * 120.00313 * 180.02562 * 24 22 19 27 27 H 1.48497 * 109.46976 * 59.99464 * 26 24 22 28 28 H 1.48494 * 109.47515 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.46746 * 299.99893 * 26 24 22 30 30 H 1.09000 * 109.47224 * 59.99530 * 1 2 3 31 31 H 1.08993 * 109.47268 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46748 * 300.00121 * 1 2 3 33 33 H 1.08998 * 109.46779 * 240.00334 * 2 1 3 34 34 H 1.09000 * 109.47224 * 120.00470 * 2 1 3 35 35 H 1.08996 * 109.47533 * 60.00295 * 4 3 2 36 36 H 1.08998 * 109.47205 * 300.00269 * 4 3 2 37 37 H 1.09003 * 109.46993 * 60.00193 * 5 4 3 38 38 H 1.08998 * 109.47390 * 300.00350 * 5 4 3 39 39 H 1.08998 * 110.48973 * 240.13036 * 10 8 7 40 40 H 1.09001 * 110.48557 * 2.77920 * 10 8 7 41 41 H 1.08997 * 110.90453 * 139.07415 * 11 10 8 42 42 H 1.08988 * 110.91008 * 262.65225 * 11 10 8 43 43 H 1.09002 * 110.61854 * 81.47233 * 12 11 10 44 44 H 1.08999 * 110.61875 * 204.47269 * 12 11 10 45 45 H 1.08997 * 109.47185 * 65.58851 * 18 17 16 46 46 H 1.09001 * 109.46963 * 185.58052 * 18 17 16 47 47 H 1.08994 * 109.47625 * 305.58732 * 18 17 16 48 48 H 1.09002 * 109.47359 * 59.99931 * 21 19 17 49 49 H 1.09004 * 109.46464 * 180.02562 * 21 19 17 50 50 H 1.09000 * 109.47113 * 299.99381 * 21 19 17 51 51 H 0.97000 * 120.00527 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 7 5.2859 3.0540 -0.0012 7 6 6.1170 3.0159 1.0840 8 6 5.7008 2.8441 2.5222 9 1 4.6323 3.0337 2.6238 10 6 6.0265 1.4138 2.9946 11 6 6.9752 1.6194 4.2006 12 6 6.6593 3.0785 4.6172 13 8 6.4425 3.7491 3.3571 14 7 7.3355 3.1552 0.6440 15 7 7.3309 3.2772 -0.6354 16 6 6.0990 3.2213 -1.0840 17 7 5.6997 3.3108 -2.4081 18 6 5.9747 4.6475 -2.9516 19 6 6.3399 2.2693 -3.2226 20 1 7.4226 2.3855 -3.1755 21 6 5.9510 0.8906 -2.6849 22 6 5.8830 2.3985 -4.6528 23 1 5.1864 3.1762 -4.9290 24 6 6.3535 1.5232 -5.6085 25 7 7.2014 0.5758 -5.2721 26 14 5.7878 1.6837 -7.3815 27 1 6.1666 3.0216 -7.9027 28 1 6.4348 0.6309 -8.2049 29 1 4.3125 1.5267 -7.4465 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8333 0.9767 -0.8908 36 1 3.8340 0.9763 0.8891 37 1 3.4231 3.4221 0.8889 38 1 3.4223 3.4217 -0.8911 39 1 5.1179 0.8992 3.3073 40 1 6.5293 0.8563 2.2044 41 1 6.7366 0.9247 5.0060 42 1 8.0171 1.5178 3.8976 43 1 5.7598 3.1161 5.2317 44 1 7.5051 3.5185 5.1456 45 1 7.0518 4.8109 -2.9867 46 1 5.5630 4.7222 -3.9582 47 1 5.5134 5.4012 -2.3136 48 1 4.8682 0.7744 -2.7320 49 1 6.4264 0.1178 -3.2890 50 1 6.2818 0.7975 -1.6505 51 1 7.5321 -0.0403 -5.9443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001516746281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:47 Heat of formation + Delta-G solvation = -17.390329 kcal Electronic energy + Delta-G solvation = -31481.560795 eV Core-core repulsion = 27417.448665 eV Total energy + Delta-G solvation = -4064.112130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.12032 -40.34683 -39.23487 -38.79270 -36.36773 -34.95139 -33.21667 -32.56930 -32.16612 -31.30774 -29.97859 -29.19921 -27.49327 -26.16976 -24.89455 -24.52205 -23.71886 -23.38581 -22.67194 -21.40901 -21.15570 -18.69227 -18.37357 -17.84240 -17.63444 -17.29193 -17.17837 -16.90908 -16.78473 -16.39733 -15.88205 -15.69613 -15.28857 -15.18726 -15.06440 -14.59207 -14.44697 -14.20317 -13.77005 -13.39191 -13.31984 -13.21796 -13.06014 -12.92102 -12.81981 -12.73123 -12.70939 -12.57144 -12.36223 -12.22852 -12.19083 -12.15237 -12.09125 -12.05615 -11.77348 -11.58984 -11.21880 -11.12124 -10.84943 -10.68512 -10.58192 -10.04277 -9.59594 -8.15760 -6.30163 0.58811 1.04507 1.45271 1.47074 1.54651 1.71646 2.38778 2.54305 2.82578 3.04976 3.15625 3.22185 3.48938 3.62468 3.73677 3.79976 3.93774 4.08340 4.10479 4.11338 4.16182 4.30357 4.33922 4.37189 4.41057 4.48528 4.54375 4.59349 4.63428 4.70449 4.74810 4.79156 4.84489 4.88140 4.90549 4.93437 4.98137 5.02018 5.04210 5.06879 5.18077 5.28372 5.33304 5.47204 5.60630 5.77479 5.85759 5.92548 6.06813 6.11357 6.55948 6.79684 7.39020 7.67894 8.91229 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009825 B = 0.003982 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.193447 B = 7030.832620 C = 8862.367214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.392 6.392 4 C 0.059 3.941 5 C 0.113 3.887 6 N -0.457 5.457 7 C 0.174 3.826 8 C 0.173 3.827 9 H 0.116 0.884 10 C -0.143 4.143 11 C -0.147 4.147 12 C 0.042 3.958 13 O -0.386 6.386 14 N -0.306 5.306 15 N -0.359 5.359 16 C 0.372 3.628 17 N -0.465 5.465 18 C 0.053 3.947 19 C 0.236 3.764 20 H -0.028 1.028 21 C -0.107 4.107 22 C -0.524 4.524 23 H 0.074 0.926 24 C 0.015 3.985 25 N -0.921 5.921 26 Si 0.968 3.032 27 H -0.269 1.269 28 H -0.287 1.287 29 H -0.266 1.266 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.055 0.945 41 H 0.115 0.885 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.016 0.984 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.039 0.961 49 H 0.067 0.933 50 H -0.002 1.002 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.979 -0.485 19.648 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 O -0.311 6.311 4 C -0.019 4.019 5 C -0.009 4.009 6 N -0.152 5.152 7 C -0.095 4.095 8 C 0.113 3.887 9 H 0.134 0.866 10 C -0.182 4.182 11 C -0.184 4.184 12 C -0.033 4.033 13 O -0.305 6.305 14 N -0.146 5.146 15 N -0.203 5.203 16 C 0.015 3.985 17 N -0.192 5.192 18 C -0.094 4.094 19 C 0.131 3.869 20 H -0.010 1.010 21 C -0.165 4.165 22 C -0.562 4.562 23 H 0.092 0.908 24 C -0.184 4.184 25 N -0.560 5.560 26 Si 0.793 3.207 27 H -0.194 1.194 28 H -0.213 1.213 29 H -0.191 1.191 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.074 0.926 41 H 0.133 0.867 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.034 0.966 46 H 0.112 0.888 47 H 0.090 0.910 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.017 0.983 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.954 -0.210 19.492 22.867 hybrid contribution 0.083 -0.518 -1.440 1.533 sum -11.871 -0.728 18.052 21.617 Atomic orbital electron populations 1.21749 0.91959 1.03542 1.03061 1.22723 0.96865 0.82327 1.00782 1.87764 1.19168 1.28517 1.95602 1.22557 0.82554 0.95601 1.01169 1.21741 0.74037 0.97696 1.07401 1.46244 1.09180 1.54197 1.05590 1.25182 0.86731 1.04985 0.92557 1.21058 0.96601 0.91394 0.79678 0.86643 1.23028 1.02323 0.94035 0.98798 1.23124 0.99621 0.97963 0.97703 1.23892 1.02862 0.91425 0.85168 1.88963 1.75962 1.39119 1.26431 1.73888 1.19513 1.18282 1.02922 1.74666 1.18939 1.22541 1.04107 1.22758 0.85403 1.00562 0.89790 1.59215 1.58134 1.07008 0.94853 1.22232 0.99034 0.86631 1.01531 1.19086 0.90403 0.86364 0.91089 1.01026 1.21548 0.99250 1.00042 0.95650 1.21295 1.27455 1.15807 0.91666 0.90800 1.25755 0.94751 0.94571 1.03341 1.70039 1.32240 1.18318 1.35367 0.85453 0.78705 0.77876 0.78676 1.19409 1.21264 1.19103 0.92581 0.89144 0.91145 0.94093 0.91619 0.94479 0.91361 0.85111 0.87502 0.86363 0.92635 0.86659 0.91922 0.88883 0.87834 0.96563 0.88830 0.91034 0.94158 0.91463 0.98258 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.05 0.93 6.66 71.98 0.48 1.41 16 3 O -0.39 -9.22 10.34 -148.98 -1.54 -10.76 16 4 C 0.06 1.49 6.26 71.98 0.45 1.94 16 5 C 0.11 2.94 6.28 86.38 0.54 3.49 16 6 N -0.46 -15.69 2.81 -514.83 -1.45 -17.14 16 7 C 0.17 5.96 6.75 137.64 0.93 6.89 16 8 C 0.17 4.06 3.83 30.22 0.12 4.18 16 9 H 0.12 1.95 7.13 -2.39 -0.02 1.94 16 10 C -0.14 -2.66 6.63 31.59 0.21 -2.45 16 11 C -0.15 -2.24 7.15 31.90 0.23 -2.01 16 12 C 0.04 0.65 7.72 72.67 0.56 1.21 16 13 O -0.39 -9.95 11.17 -148.98 -1.66 -11.61 16 14 N -0.31 -13.37 12.18 -49.53 -0.60 -13.97 16 15 N -0.36 -17.47 12.09 -58.00 -0.70 -18.17 16 16 C 0.37 16.13 5.05 260.11 1.31 17.44 16 17 N -0.47 -20.93 4.63 -711.01 -3.29 -24.22 16 18 C 0.05 2.17 9.15 127.69 1.17 3.34 16 19 C 0.24 12.50 1.99 44.17 0.09 12.59 16 20 H -0.03 -1.74 8.06 -2.39 -0.02 -1.76 16 21 C -0.11 -5.45 8.59 71.98 0.62 -4.84 16 22 C -0.52 -28.24 7.95 25.60 0.20 -28.04 16 23 H 0.07 3.79 6.39 -2.91 -0.02 3.78 16 24 C 0.02 0.83 5.30 84.65 0.45 1.28 16 25 N -0.92 -53.30 11.32 21.45 0.24 -53.05 16 26 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 29 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.04 1.20 6.90 -2.39 -0.02 1.18 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.13 2.43 7.34 -2.39 -0.02 2.41 16 38 H 0.11 3.00 8.11 -2.39 -0.02 2.98 16 39 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.38 7.69 -2.39 -0.02 1.36 16 41 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 3.72 6.29 -2.39 -0.02 3.71 16 47 H 0.07 2.50 8.11 -2.39 -0.02 2.48 16 48 H 0.04 1.94 7.19 -2.39 -0.02 1.92 16 49 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 50 H 0.00 -0.08 7.22 -2.39 -0.02 -0.10 16 51 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -74.52 407.48 2.02 -72.49 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.91 Total: 16.71 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 8.09 Total: 15.04 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -5.80 Total: -126.55 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -3.20 Total: -22.38 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -74.52 2.02 -72.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516746281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.101 kcal (2) G-P(sol) polarization free energy of solvation -74.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds