Wall clock time and date at job start Tue Mar 31 2020 22:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46842 * 111.00103 * 2 1 4 4 C 1.53036 * 109.52562 * 174.16166 * 3 2 1 5 5 C 1.53123 * 109.27959 * 59.17868 * 4 3 2 6 6 C 1.53114 * 109.14959 * 302.34020 * 5 4 3 7 7 C 1.46852 * 110.99921 * 235.78958 * 2 1 3 8 8 H 1.08998 * 109.46103 * 65.83722 * 7 2 1 9 9 C 1.50697 * 109.46372 * 305.85228 * 7 2 1 10 10 O 1.21280 * 119.99973 * 339.98224 * 9 7 2 11 11 N 1.34771 * 119.99891 * 159.97719 * 9 7 2 12 12 C 1.46506 * 120.00207 * 180.02562 * 11 9 7 13 13 H 1.09007 * 110.77864 * 36.79535 * 12 11 9 14 14 C 1.54593 * 110.72363 * 273.54951 * 12 11 9 15 15 C 1.53997 * 105.13807 * 219.68019 * 14 12 11 16 16 N 1.47899 * 107.05889 * 358.77516 * 15 14 12 17 17 C 1.46897 * 111.00068 * 145.84368 * 16 15 14 18 18 C 1.50700 * 109.47366 * 69.87158 * 17 16 15 19 19 O 1.21292 * 119.99430 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00321 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00148 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00166 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00145 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00350 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99978 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47241 * 89.99926 * 25 23 21 27 27 H 1.48497 * 109.47323 * 210.00092 * 25 23 21 28 28 H 1.48502 * 109.47269 * 330.00567 * 25 23 21 29 29 C 1.48538 * 105.82096 * 25.32759 * 16 15 14 30 30 H 1.09003 * 109.47075 * 184.21329 * 1 2 3 31 31 H 1.08998 * 109.47467 * 304.20549 * 1 2 3 32 32 H 1.08997 * 109.47236 * 64.21288 * 1 2 3 33 33 H 1.09002 * 109.46131 * 294.17791 * 3 2 1 34 34 H 1.08999 * 109.46081 * 54.15608 * 3 2 1 35 35 H 1.09000 * 109.50246 * 179.11927 * 4 3 2 36 36 H 1.08997 * 109.50309 * 299.19795 * 4 3 2 37 37 H 1.08997 * 109.51942 * 62.24937 * 5 4 3 38 38 H 1.08999 * 109.52248 * 182.37466 * 5 4 3 39 39 H 1.08989 * 109.51675 * 297.72140 * 6 5 4 40 40 H 1.09006 * 109.49607 * 177.60355 * 6 5 4 41 41 H 0.96998 * 120.00610 * 359.97438 * 11 9 7 42 42 H 1.09004 * 110.30922 * 100.76365 * 14 12 11 43 43 H 1.08998 * 110.30989 * 338.59486 * 14 12 11 44 44 H 1.09004 * 109.91456 * 118.12612 * 15 14 12 45 45 H 1.09001 * 109.91811 * 239.22178 * 15 14 12 46 46 H 1.09001 * 109.46941 * 189.87529 * 17 16 15 47 47 H 1.09004 * 109.46820 * 309.87460 * 17 16 15 48 48 H 0.97004 * 119.99665 * 359.97438 * 20 18 17 49 49 H 0.97001 * 120.00070 * 179.97438 * 24 23 21 50 50 H 1.09007 * 110.66246 * 79.22764 * 29 16 15 51 51 H 1.08993 * 110.66671 * 202.18915 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5369 -1.0144 6 6 3.5181 -0.8715 -1.0206 7 6 1.9952 -0.7708 -1.1338 8 1 1.7326 -0.2708 -2.0660 9 6 1.3982 -2.1544 -1.1206 10 8 0.9168 -2.5975 -0.0994 11 7 1.3992 -2.8995 -2.2436 12 6 0.8184 -4.2444 -2.2310 13 1 -0.0651 -4.2782 -1.5933 14 6 1.8636 -5.2875 -1.7734 15 6 1.6278 -6.5147 -2.6733 16 7 0.4929 -6.1881 -3.5637 17 6 0.6647 -6.8078 -4.8844 18 6 0.5007 -8.3010 -4.7639 19 8 0.2635 -8.7997 -3.6840 20 7 0.6176 -9.0822 -5.8558 21 6 0.4678 -10.4405 -5.7462 22 1 0.2566 -10.8846 -4.7847 23 6 0.5888 -11.2459 -6.8720 24 7 0.4457 -12.5480 -6.7669 25 14 0.9549 -10.4778 -8.5350 26 1 2.4247 -10.4056 -8.7342 27 1 0.3502 -11.3080 -9.6076 28 1 0.3808 -9.1092 -8.5853 29 6 0.4743 -4.7066 -3.6692 30 1 -0.3633 -1.0249 0.0755 31 1 -0.3634 0.5777 0.8499 32 1 -0.3633 0.4470 -0.9253 33 1 1.7324 1.8608 -0.9376 34 1 1.5635 1.9256 0.8331 35 1 3.9098 2.3512 0.1310 36 1 3.7813 0.8574 1.0909 37 1 3.8886 1.0354 -1.9560 38 1 5.1999 0.4724 -0.8912 39 1 3.7812 -1.3835 -0.0951 40 1 3.9100 -1.4304 -1.8704 41 1 1.7838 -2.5451 -3.0605 42 1 1.7041 -5.5491 -0.7273 43 1 2.8724 -4.9007 -1.9178 44 1 2.5194 -6.7166 -3.2669 45 1 1.3851 -7.3831 -2.0608 46 1 -0.0849 -6.4141 -5.5708 47 1 1.6607 -6.5813 -5.2652 48 1 0.8069 -8.6832 -6.7195 49 1 0.5299 -13.1102 -7.5529 50 1 1.2299 -4.3617 -4.3752 51 1 -0.5144 -4.3543 -3.9632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566670882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:44 Heat of formation + Delta-G solvation = -49.788467 kcal Electronic energy + Delta-G solvation = -29673.295579 eV Core-core repulsion = 25607.778560 eV Total energy + Delta-G solvation = -4065.517019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79030 -39.39927 -38.34161 -37.47314 -34.71059 -33.93912 -33.75595 -32.00173 -31.65377 -30.76940 -28.60478 -27.28763 -26.60441 -24.48637 -23.89777 -23.30343 -21.41803 -21.30406 -20.50169 -20.03629 -19.31919 -18.28548 -17.61590 -16.77761 -16.16363 -15.88129 -15.83309 -15.35503 -15.16652 -14.90283 -14.76114 -14.68915 -14.40540 -13.95336 -13.63680 -13.56594 -13.44123 -13.34747 -13.10551 -12.88335 -12.60660 -12.43126 -12.28954 -12.09959 -11.86446 -11.82165 -11.74065 -11.40039 -11.38504 -11.29583 -11.17971 -11.10142 -10.87916 -10.61701 -10.60353 -9.97534 -9.83261 -9.56106 -9.26838 -8.70218 -8.64036 -8.18714 -8.09644 -6.30628 -3.82025 2.36153 2.69237 3.01459 3.05407 3.14120 3.51031 3.73926 3.98854 4.09962 4.24420 4.29639 4.42247 4.45815 4.57712 4.64187 4.67787 4.78275 4.93621 4.99981 5.03246 5.06849 5.13724 5.20248 5.21107 5.21537 5.28737 5.34579 5.44135 5.46178 5.52722 5.58161 5.64413 5.64781 5.66192 5.76743 5.79612 5.89219 5.91030 5.94645 6.09029 6.26469 6.42583 6.54114 6.66002 7.01893 7.03579 7.25194 7.58500 8.00670 8.14801 8.60649 8.95905 9.42737 9.83942 10.82557 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.029400 B = 0.001867 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.166613 B =14996.264512 C =15307.689213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.520 5.520 3 C 0.056 3.944 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.108 4.108 7 C 0.071 3.929 8 H 0.060 0.940 9 C 0.517 3.483 10 O -0.514 6.514 11 N -0.724 5.724 12 C 0.144 3.856 13 H 0.104 0.896 14 C -0.140 4.140 15 C 0.045 3.955 16 N -0.488 5.488 17 C 0.035 3.965 18 C 0.453 3.547 19 O -0.557 6.557 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.029 3.971 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.020 0.980 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.398 0.602 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.370 0.630 49 H 0.273 0.727 50 H 0.047 0.953 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 31.481 6.236 32.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.041 4.041 8 H 0.077 0.923 9 C 0.302 3.698 10 O -0.388 6.388 11 N -0.376 5.376 12 C 0.039 3.961 13 H 0.122 0.878 14 C -0.179 4.179 15 C -0.083 4.083 16 N -0.212 5.212 17 C -0.097 4.097 18 C 0.238 3.762 19 O -0.438 6.438 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.100 4.100 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.232 0.768 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.069 0.931 48 H 0.202 0.798 49 H 0.084 0.916 50 H 0.065 0.935 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.940 30.146 8.271 31.819 hybrid contribution 0.950 1.255 -3.137 3.510 sum 6.891 31.401 5.134 32.556 Atomic orbital electron populations 1.22605 0.86412 1.04380 1.00009 1.61641 1.08378 1.13008 1.41475 1.22148 0.95732 0.88591 1.00682 1.21626 0.94327 1.00272 0.99556 1.21575 1.00333 0.95085 0.98722 1.21555 0.91411 0.98113 1.03505 1.21602 0.96579 0.92122 0.93795 0.92271 1.20408 0.79113 0.86821 0.83425 1.90708 1.44336 1.72394 1.31364 1.46045 1.61952 1.16752 1.12862 1.21843 0.96918 0.80221 0.97096 0.87790 1.22851 0.98672 0.95230 1.01156 1.22873 0.91615 0.98466 0.95368 1.64433 1.42260 1.04393 1.10125 1.22116 1.00788 0.95455 0.91327 1.19584 0.84209 0.87155 0.85213 1.90564 1.51540 1.74790 1.26884 1.42196 1.65173 1.07787 1.08080 1.19425 1.45929 0.79324 0.98542 0.86265 1.25036 0.97783 0.95295 0.98103 1.69622 1.48932 1.03153 1.30478 0.86675 0.79129 0.79225 0.84357 1.19712 1.20184 1.19530 1.23446 1.01678 0.89774 0.95070 0.89177 0.91166 0.96174 0.94910 0.90248 0.91295 0.90749 0.92030 0.91129 0.90163 0.90941 0.76820 0.90325 0.91439 0.93942 0.88475 0.89097 0.93084 0.79793 0.91639 0.93532 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.10 60.06 0.55 0.67 16 2 N -0.52 -4.64 4.51 -236.33 -1.07 -5.70 16 3 C 0.06 0.37 5.46 -3.84 -0.02 0.35 16 4 C -0.12 -0.67 6.09 -26.65 -0.16 -0.83 16 5 C -0.12 -0.62 6.00 -26.61 -0.16 -0.78 16 6 C -0.11 -0.72 5.35 -26.65 -0.14 -0.87 16 7 C 0.07 0.57 2.24 -68.87 -0.15 0.41 16 8 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 9 C 0.52 5.40 6.26 -10.99 -0.07 5.33 16 10 O -0.51 -7.46 14.26 5.56 0.08 -7.38 16 11 N -0.72 -6.28 5.14 -52.01 -0.27 -6.54 16 12 C 0.14 1.61 3.34 -66.07 -0.22 1.39 16 13 H 0.10 1.38 7.71 -51.92 -0.40 0.98 16 14 C -0.14 -1.73 6.67 -25.37 -0.17 -1.90 16 15 C 0.04 0.68 5.75 -2.75 -0.02 0.67 16 16 N -0.49 -7.60 4.96 -231.89 -1.15 -8.75 16 17 C 0.04 0.57 5.25 -4.98 -0.03 0.54 16 18 C 0.45 10.22 7.58 -10.99 -0.08 10.14 16 19 O -0.56 -14.89 14.66 5.55 0.08 -14.81 16 20 N -0.59 -14.02 5.09 -10.97 -0.06 -14.07 16 21 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 25 Si 0.88 19.23 27.74 -169.99 -4.71 14.52 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 29 C 0.03 0.32 6.14 -1.90 -0.01 0.31 16 30 H 0.09 1.02 5.62 -51.93 -0.29 0.73 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.68 8.14 -51.94 -0.42 0.26 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.40 2.33 8.52 -40.82 -0.35 1.98 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 44 H 0.04 0.64 7.57 -51.93 -0.39 0.24 16 45 H 0.10 1.78 7.39 -51.93 -0.38 1.40 16 46 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 47 H 0.05 0.72 7.82 -51.93 -0.41 0.31 16 48 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 49 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.05 0.42 7.89 -51.93 -0.41 0.01 16 51 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 397.84 15.07 6.00 6.00 Total: -1.00 -34.64 397.84 -10.01 -44.65 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -8.75 Total: 9.36 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.94 Total: 7.72 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -1.76 Total: -60.06 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.16 Total: -22.19 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.64 -10.01 -44.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566670882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.138 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds