Wall clock time and date at job start Tue Mar 31 2020 22:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48560 * 110.99935 * 2 1 4 4 C 1.54385 * 104.59462 * 200.96011 * 3 2 1 5 5 C 1.54266 * 105.05817 * 23.85839 * 4 3 2 6 6 H 1.09005 * 110.31584 * 241.00143 * 5 4 3 7 7 C 1.50697 * 110.32387 * 118.89690 * 5 4 3 8 8 O 1.21274 * 120.00158 * 359.97438 * 7 5 4 9 9 N 1.34777 * 119.99785 * 179.97438 * 7 5 4 10 10 C 1.47025 * 125.64800 * 359.96936 * 9 7 5 11 11 C 1.54328 * 107.26776 * 178.99036 * 10 9 7 12 12 C 1.55151 * 102.94537 * 337.80681 * 11 10 9 13 13 H 1.09007 * 111.00282 * 277.39717 * 12 11 10 14 14 C 1.52995 * 111.00684 * 153.57774 * 12 11 10 15 15 N 1.46906 * 109.46978 * 66.45528 * 14 12 11 16 16 C 1.46901 * 110.99793 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.46921 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47457 * 119.99901 * 24 22 20 27 27 H 1.48501 * 109.47104 * 239.99973 * 24 22 20 28 28 C 1.47429 * 125.64913 * 180.02562 * 9 7 5 29 29 C 1.48570 * 110.99713 * 244.58569 * 2 1 3 30 30 H 1.09003 * 109.47205 * 59.87257 * 1 2 3 31 31 H 1.09001 * 109.47558 * 179.87174 * 1 2 3 32 32 H 1.09003 * 109.47056 * 299.87314 * 1 2 3 33 33 H 1.09000 * 110.41186 * 82.18464 * 3 2 1 34 34 H 1.09000 * 110.41296 * 319.74120 * 3 2 1 35 35 H 1.08992 * 110.32505 * 264.96150 * 4 3 2 36 36 H 1.09003 * 110.32408 * 142.74934 * 4 3 2 37 37 H 1.08996 * 109.88216 * 59.57380 * 10 9 7 38 38 H 1.08994 * 110.01110 * 298.47503 * 10 9 7 39 39 H 1.09005 * 110.71470 * 219.44493 * 11 10 9 40 40 H 1.08996 * 110.71796 * 96.17450 * 11 10 9 41 41 H 1.08995 * 109.46859 * 306.45819 * 14 12 11 42 42 H 1.09002 * 109.47639 * 186.45487 * 14 12 11 43 43 H 1.00899 * 110.99995 * 56.04730 * 15 14 12 44 44 H 1.09002 * 109.47401 * 59.99808 * 16 15 14 45 45 H 1.09001 * 109.46874 * 299.99821 * 16 15 14 46 46 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 47 47 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 48 48 H 1.08997 * 110.36800 * 85.24111 * 28 9 7 49 49 H 1.08998 * 110.36566 * 322.91903 * 28 9 7 50 50 H 1.08994 * 110.41274 * 40.26264 * 29 2 1 51 51 H 1.09001 * 110.40907 * 277.81822 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4432 -0.0539 -1.3587 6 1 4.1496 -0.7686 -0.9363 7 6 3.7894 0.2357 -2.7965 8 8 4.0177 1.3737 -3.1479 9 7 3.8453 -0.7702 -3.6918 10 6 3.5932 -2.1895 -3.4029 11 6 3.7459 -2.9614 -4.7305 12 6 3.5193 -1.8609 -5.8005 13 1 2.4555 -1.6960 -5.9720 14 6 4.2348 -2.2104 -7.1068 15 7 3.6117 -3.3995 -7.7034 16 6 4.2748 -3.7658 -8.9621 17 6 3.6103 -4.9873 -9.5429 18 8 2.6759 -5.5018 -8.9655 19 7 4.0536 -5.5074 -10.7046 20 6 3.4487 -6.6184 -11.2333 21 1 2.6173 -7.0769 -10.7187 22 6 3.9060 -7.1549 -12.4306 23 7 4.9181 -6.5973 -13.0565 24 14 3.0815 -8.6682 -13.1514 25 1 1.9744 -9.1001 -12.2609 26 1 2.5387 -8.3436 -14.4949 27 1 4.0762 -9.7643 -13.2710 28 6 4.1706 -0.6295 -5.1229 29 6 2.0013 -0.5953 -1.2528 30 1 -0.3634 0.5158 -0.8889 31 1 -0.3634 -1.0276 -0.0023 32 1 -0.3633 0.5119 0.8911 33 1 2.0079 1.7916 1.0121 34 1 1.4098 2.0212 -0.6602 35 1 4.1483 1.1747 0.2933 36 1 3.6937 2.0996 -1.1699 37 1 2.5822 -2.3150 -3.0153 38 1 4.3172 -2.5564 -2.6755 39 1 2.9884 -3.7409 -4.8126 40 1 4.7468 -3.3840 -4.8179 41 1 5.2856 -2.4150 -6.9020 42 1 4.1561 -1.3727 -7.7997 43 1 2.6226 -3.2577 -7.8434 44 1 5.3259 -3.9813 -8.7697 45 1 4.1967 -2.9389 -9.6679 46 1 4.8006 -5.0958 -11.1665 47 1 5.2371 -6.9716 -13.8925 48 1 5.2505 -0.6429 -5.2695 49 1 3.7443 0.2917 -5.5200 50 1 1.4098 -0.2711 -2.1090 51 1 2.0078 -1.6831 -1.1840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567153115.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:08 Heat of formation + Delta-G solvation = -62.344182 kcal Electronic energy + Delta-G solvation = -28939.168073 eV Core-core repulsion = 24873.106597 eV Total energy + Delta-G solvation = -4066.061476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.84143 -39.02027 -38.29536 -37.66140 -35.43219 -33.89313 -32.86465 -31.92576 -31.21128 -29.83229 -29.36916 -27.28293 -26.29744 -24.96847 -23.77683 -22.95862 -21.80185 -21.60026 -20.62709 -19.28198 -19.20198 -17.92513 -17.73581 -16.78330 -16.31161 -16.03357 -15.80153 -15.61706 -15.19508 -14.79160 -14.61378 -14.47531 -14.16466 -14.04531 -13.83868 -13.61436 -13.51972 -13.28325 -12.96386 -12.91813 -12.76287 -12.30989 -12.07434 -11.93177 -11.81690 -11.72438 -11.64945 -11.58291 -11.55358 -11.19681 -11.15771 -11.11288 -10.96486 -10.80822 -10.36098 -10.24577 -10.13512 -9.54079 -9.02276 -8.93724 -8.49536 -8.10038 -7.98137 -6.43814 -3.84759 2.28390 2.61307 3.14802 3.25563 3.32621 3.55937 3.88112 3.95170 4.08301 4.14023 4.19535 4.31523 4.37974 4.57667 4.69441 4.79031 4.86673 4.90213 4.93338 4.99609 5.05314 5.09814 5.12288 5.17631 5.21288 5.25260 5.35704 5.39694 5.43535 5.45398 5.49812 5.54645 5.65543 5.67557 5.70794 5.75924 5.80738 5.93109 5.95031 6.04089 6.14759 6.23908 6.29851 6.47005 7.14707 7.19789 7.53410 7.60198 7.83244 8.04374 8.58915 9.15843 9.52198 10.03321 10.73931 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028365 B = 0.001622 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.904976 B =17258.571878 C =17939.696974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.514 5.514 3 C 0.030 3.970 4 C -0.117 4.117 5 C -0.110 4.110 6 H 0.107 0.893 7 C 0.534 3.466 8 O -0.540 6.540 9 N -0.615 5.615 10 C 0.093 3.907 11 C -0.114 4.114 12 C -0.097 4.097 13 H 0.084 0.916 14 C 0.070 3.930 15 N -0.666 5.666 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.111 3.889 29 C 0.043 3.957 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.349 0.651 44 H 0.086 0.914 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.049 0.951 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 14.848 23.385 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.238 5.238 3 C -0.097 4.097 4 C -0.155 4.155 5 C -0.132 4.132 6 H 0.125 0.875 7 C 0.322 3.678 8 O -0.418 6.418 9 N -0.349 5.349 10 C -0.030 4.030 11 C -0.152 4.152 12 C -0.117 4.117 13 H 0.103 0.897 14 C -0.060 4.060 15 N -0.299 5.299 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.012 4.012 29 C -0.085 4.085 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.168 0.832 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.067 0.933 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.924 14.362 24.321 28.311 hybrid contribution -0.452 0.514 -2.113 2.221 sum -2.377 14.876 22.208 26.836 Atomic orbital electron populations 1.22532 0.87569 1.02527 1.01070 1.65422 1.08567 1.15649 1.34151 1.23178 0.95215 0.89965 1.01378 1.22352 0.96699 0.97130 0.99337 1.22007 0.98706 1.00268 0.92196 0.87534 1.20150 0.76632 0.83850 0.87130 1.90680 1.50156 1.20916 1.80005 1.48473 1.69119 1.07707 1.09598 1.22284 1.01223 0.80210 0.99252 1.22583 1.04129 0.97353 0.91090 1.22331 1.00449 0.94068 0.94820 0.89740 1.21861 0.98927 0.91492 0.93769 1.60045 1.07993 1.35190 1.26625 1.21669 0.99356 0.96765 0.90400 1.19805 0.87115 0.87262 0.83202 1.90520 1.31051 1.63623 1.61605 1.41876 1.31587 1.26916 1.19672 1.19755 1.14703 1.04062 1.04372 0.87853 1.25267 0.96554 0.99511 0.96638 1.69622 1.25645 1.41257 1.17753 0.85797 0.79087 0.80720 0.78719 1.19221 1.20776 1.20735 1.22239 1.00175 0.98898 0.79871 1.23106 0.92962 1.00666 0.91752 0.95182 0.90938 0.91011 0.89700 0.93555 0.90366 0.88723 0.91207 0.91179 0.88973 0.90066 0.90682 0.95123 0.83185 0.89585 0.93867 0.77459 0.91914 0.91077 0.90448 0.93284 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.53 60.06 0.57 0.65 16 2 N -0.51 -3.95 5.66 -238.22 -1.35 -5.30 16 3 C 0.03 0.22 6.49 -2.18 -0.01 0.21 16 4 C -0.12 -0.93 6.59 -25.34 -0.17 -1.10 16 5 C -0.11 -0.89 2.89 -90.39 -0.26 -1.15 16 6 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 7 C 0.53 5.73 7.07 -10.99 -0.08 5.65 16 8 O -0.54 -7.68 15.51 5.56 0.09 -7.60 16 9 N -0.62 -5.83 3.33 -170.52 -0.57 -6.40 16 10 C 0.09 0.69 6.16 -3.06 -0.02 0.67 16 11 C -0.11 -1.00 6.25 -24.90 -0.16 -1.15 16 12 C -0.10 -0.91 3.23 -88.48 -0.29 -1.20 16 13 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 14 C 0.07 0.76 5.13 -3.82 -0.02 0.74 16 15 N -0.67 -9.81 5.95 -115.05 -0.68 -10.50 16 16 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 17 C 0.44 10.14 7.82 -10.98 -0.09 10.06 16 18 O -0.58 -15.47 15.78 5.55 0.09 -15.38 16 19 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 20 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 24 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 C 0.11 1.06 6.38 -2.53 -0.02 1.05 16 29 C 0.04 0.33 4.76 -2.18 -0.01 0.31 16 30 H 0.03 0.20 7.97 -51.93 -0.41 -0.22 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.36 7.97 -51.93 -0.41 -0.05 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.92 6.46 -51.93 -0.34 0.58 16 37 H 0.07 0.46 6.29 -51.93 -0.33 0.13 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.74 8.01 -51.93 -0.42 0.33 16 41 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.35 5.37 8.43 -39.29 -0.33 5.04 16 44 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.07 0.66 8.04 -51.93 -0.42 0.25 16 49 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 50 H 0.05 0.42 7.62 -51.93 -0.40 0.02 16 51 H 0.09 0.58 7.16 -51.93 -0.37 0.21 16 LS Contribution 406.08 15.07 6.12 6.12 Total: -1.00 -32.68 406.08 -10.22 -42.90 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -8.74 Total: 10.42 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -0.81 Total: 7.64 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -1.93 Total: -59.93 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.17 Total: -22.97 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.68 -10.22 -42.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567153115.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.444 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds