Wall clock time and date at job start Tue Mar 31 2020 22:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48560 * 110.99935 * 2 1 4 4 C 1.54385 * 104.59462 * 200.96011 * 3 2 1 5 5 C 1.54266 * 105.05817 * 23.85839 * 4 3 2 6 6 H 1.09005 * 110.31584 * 241.00143 * 5 4 3 7 7 C 1.50697 * 110.32387 * 118.89690 * 5 4 3 8 8 O 1.21274 * 120.00158 * 359.97438 * 7 5 4 9 9 N 1.34777 * 119.99785 * 179.97438 * 7 5 4 10 10 C 1.47025 * 125.64800 * 359.96936 * 9 7 5 11 11 C 1.54328 * 107.26776 * 178.99036 * 10 9 7 12 12 C 1.55151 * 102.94537 * 337.80681 * 11 10 9 13 13 H 1.09007 * 111.00282 * 277.39717 * 12 11 10 14 14 C 1.52995 * 111.00684 * 153.57774 * 12 11 10 15 15 N 1.46906 * 109.46978 * 66.45528 * 14 12 11 16 16 C 1.46901 * 110.99793 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.46921 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47457 * 119.99901 * 24 22 20 27 27 H 1.48501 * 109.47104 * 239.99973 * 24 22 20 28 28 C 1.47429 * 125.64913 * 180.02562 * 9 7 5 29 29 C 1.48570 * 110.99713 * 244.58569 * 2 1 3 30 30 H 1.09003 * 109.47205 * 59.87257 * 1 2 3 31 31 H 1.09001 * 109.47558 * 179.87174 * 1 2 3 32 32 H 1.09003 * 109.47056 * 299.87314 * 1 2 3 33 33 H 1.09000 * 110.41186 * 82.18464 * 3 2 1 34 34 H 1.09000 * 110.41296 * 319.74120 * 3 2 1 35 35 H 1.08992 * 110.32505 * 264.96150 * 4 3 2 36 36 H 1.09003 * 110.32408 * 142.74934 * 4 3 2 37 37 H 1.08996 * 109.88216 * 59.57380 * 10 9 7 38 38 H 1.08994 * 110.01110 * 298.47503 * 10 9 7 39 39 H 1.09005 * 110.71470 * 219.44493 * 11 10 9 40 40 H 1.08996 * 110.71796 * 96.17450 * 11 10 9 41 41 H 1.08995 * 109.46859 * 306.45819 * 14 12 11 42 42 H 1.09002 * 109.47639 * 186.45487 * 14 12 11 43 43 H 1.00899 * 110.99995 * 56.04730 * 15 14 12 44 44 H 1.09002 * 109.47401 * 59.99808 * 16 15 14 45 45 H 1.09001 * 109.46874 * 299.99821 * 16 15 14 46 46 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 47 47 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 48 48 H 1.08997 * 110.36800 * 85.24111 * 28 9 7 49 49 H 1.08998 * 110.36566 * 322.91903 * 28 9 7 50 50 H 1.08994 * 110.41274 * 40.26264 * 29 2 1 51 51 H 1.09001 * 110.40907 * 277.81822 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4432 -0.0539 -1.3587 6 1 4.1496 -0.7686 -0.9363 7 6 3.7894 0.2357 -2.7965 8 8 4.0177 1.3737 -3.1479 9 7 3.8453 -0.7702 -3.6918 10 6 3.5932 -2.1895 -3.4029 11 6 3.7459 -2.9614 -4.7305 12 6 3.5193 -1.8609 -5.8005 13 1 2.4555 -1.6960 -5.9720 14 6 4.2348 -2.2104 -7.1068 15 7 3.6117 -3.3995 -7.7034 16 6 4.2748 -3.7658 -8.9621 17 6 3.6103 -4.9873 -9.5429 18 8 2.6759 -5.5018 -8.9655 19 7 4.0536 -5.5074 -10.7046 20 6 3.4487 -6.6184 -11.2333 21 1 2.6173 -7.0769 -10.7187 22 6 3.9060 -7.1549 -12.4306 23 7 4.9181 -6.5973 -13.0565 24 14 3.0815 -8.6682 -13.1514 25 1 1.9744 -9.1001 -12.2609 26 1 2.5387 -8.3436 -14.4949 27 1 4.0762 -9.7643 -13.2710 28 6 4.1706 -0.6295 -5.1229 29 6 2.0013 -0.5953 -1.2528 30 1 -0.3634 0.5158 -0.8889 31 1 -0.3634 -1.0276 -0.0023 32 1 -0.3633 0.5119 0.8911 33 1 2.0079 1.7916 1.0121 34 1 1.4098 2.0212 -0.6602 35 1 4.1483 1.1747 0.2933 36 1 3.6937 2.0996 -1.1699 37 1 2.5822 -2.3150 -3.0153 38 1 4.3172 -2.5564 -2.6755 39 1 2.9884 -3.7409 -4.8126 40 1 4.7468 -3.3840 -4.8179 41 1 5.2856 -2.4150 -6.9020 42 1 4.1561 -1.3727 -7.7997 43 1 2.6226 -3.2577 -7.8434 44 1 5.3259 -3.9813 -8.7697 45 1 4.1967 -2.9389 -9.6679 46 1 4.8006 -5.0958 -11.1665 47 1 5.2371 -6.9716 -13.8925 48 1 5.2505 -0.6429 -5.2695 49 1 3.7443 0.2917 -5.5200 50 1 1.4098 -0.2711 -2.1090 51 1 2.0078 -1.6831 -1.1840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567153115.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:07 Heat of formation + Delta-G solvation = -87.662854 kcal Electronic energy + Delta-G solvation = -28940.265973 eV Core-core repulsion = 24873.106597 eV Total energy + Delta-G solvation = -4067.159376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.59362 -40.17663 -39.59402 -38.53654 -36.64173 -35.80321 -33.60880 -33.25671 -32.70399 -30.53286 -30.12293 -28.54723 -27.02307 -26.41216 -24.87281 -23.92974 -22.43484 -22.22423 -21.52416 -20.93023 -19.98953 -19.88082 -18.50494 -17.86911 -17.34447 -16.94070 -16.82356 -16.68800 -16.42896 -16.08700 -15.89751 -15.34552 -15.25038 -15.11551 -14.95690 -14.70442 -14.42403 -14.20142 -13.91384 -13.74341 -13.63911 -13.52376 -13.40363 -13.16893 -12.84564 -12.70041 -12.65138 -12.44395 -12.39719 -12.32290 -12.20106 -12.11548 -11.99945 -11.83147 -11.75371 -11.56510 -11.50046 -10.98781 -10.32990 -10.00408 -9.72606 -9.59089 -9.29961 -8.46132 -5.94750 1.37320 1.42777 1.48018 1.56751 1.86977 2.06789 2.29785 2.89380 2.97974 3.21515 3.39009 3.47893 3.55744 3.65001 3.65892 3.85081 3.95275 4.14823 4.22460 4.30089 4.30917 4.35664 4.38622 4.43591 4.47333 4.49658 4.53282 4.57609 4.60372 4.62418 4.74985 4.75847 4.80678 4.90148 4.93168 4.98994 5.03512 5.04694 5.10370 5.20108 5.30250 5.40097 5.42031 5.72197 5.89028 5.92133 6.10671 6.40069 6.44798 6.60971 7.03057 7.13650 7.57718 8.12715 8.71427 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028365 B = 0.001622 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.904976 B =17258.571878 C =17939.696974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.520 5.520 3 C 0.031 3.969 4 C -0.117 4.117 5 C -0.105 4.105 6 H 0.126 0.874 7 C 0.530 3.470 8 O -0.583 6.583 9 N -0.615 5.615 10 C 0.095 3.905 11 C -0.111 4.111 12 C -0.089 4.089 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.676 5.676 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.271 1.271 28 C 0.113 3.887 29 C 0.047 3.953 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.036 0.964 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.344 0.656 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.035 0.965 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 14.440 24.378 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.243 5.243 3 C -0.096 4.096 4 C -0.155 4.155 5 C -0.127 4.127 6 H 0.144 0.856 7 C 0.319 3.681 8 O -0.463 6.463 9 N -0.347 5.347 10 C -0.026 4.026 11 C -0.149 4.149 12 C -0.109 4.109 13 H 0.099 0.901 14 C -0.056 4.056 15 N -0.308 5.308 16 C -0.067 4.067 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.011 4.011 29 C -0.081 4.081 30 H 0.043 0.957 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.055 0.945 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.162 0.838 44 H 0.123 0.877 45 H 0.082 0.918 46 H 0.230 0.770 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.084 0.916 50 H 0.054 0.946 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.558 13.953 25.318 28.950 hybrid contribution -0.569 0.680 -2.389 2.549 sum -2.126 14.633 22.928 27.283 Atomic orbital electron populations 1.22579 0.86835 1.03095 1.01268 1.65461 1.09332 1.15563 1.33981 1.23187 0.94659 0.89944 1.01841 1.22334 0.97438 0.96351 0.99390 1.22040 0.99515 1.00751 0.90359 0.85636 1.20623 0.75913 0.83336 0.88184 1.90661 1.52203 1.22623 1.80863 1.48554 1.68327 1.08447 1.09373 1.22382 1.02618 0.78678 0.98954 1.22538 1.03799 0.96996 0.91544 1.22205 1.00027 0.94250 0.94368 0.90074 1.21901 0.99192 0.90258 0.94220 1.60042 1.07770 1.37414 1.25542 1.21527 0.99510 0.94207 0.91494 1.20899 0.86253 0.88167 0.82085 1.90489 1.32776 1.65172 1.62405 1.41952 1.31908 1.26792 1.20549 1.19709 1.15256 1.05806 1.05480 0.90258 1.26032 0.96934 1.01957 0.96398 1.69680 1.26175 1.42253 1.18078 0.84870 0.78097 0.77418 0.77950 1.19750 1.19701 1.19667 1.22184 1.00366 0.98322 0.80184 1.23107 0.92216 1.01487 0.91315 0.95744 0.90188 0.90096 0.88415 0.94549 0.88946 0.90869 0.89962 0.89239 0.89693 0.90147 0.89754 0.94210 0.83791 0.87694 0.91767 0.76999 0.91351 0.90583 0.91648 0.94626 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.53 127.69 1.22 1.34 16 2 N -0.52 -7.14 5.66 -907.60 -5.14 -12.27 16 3 C 0.03 0.43 6.49 86.45 0.56 1.00 16 4 C -0.12 -1.76 6.59 31.49 0.21 -1.56 16 5 C -0.11 -1.54 2.89 -10.64 -0.03 -1.57 16 6 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 7 C 0.53 11.04 7.07 87.66 0.62 11.66 16 8 O -0.58 -16.87 15.51 -3.01 -0.05 -16.92 16 9 N -0.61 -10.88 3.33 -811.80 -2.70 -13.58 16 10 C 0.10 1.21 6.16 86.73 0.53 1.75 16 11 C -0.11 -1.76 6.25 31.78 0.20 -1.56 16 12 C -0.09 -1.55 3.23 -9.41 -0.03 -1.58 16 13 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 14 C 0.07 1.46 5.13 86.30 0.44 1.90 16 15 N -0.68 -19.03 5.95 -517.92 -3.08 -22.11 16 16 C 0.07 2.09 6.17 85.56 0.53 2.62 16 17 C 0.44 20.21 7.82 87.66 0.69 20.90 16 18 O -0.62 -33.48 15.78 -3.07 -0.05 -33.52 16 19 N -0.57 -28.97 5.29 -306.98 -1.62 -30.59 16 20 C -0.33 -18.71 9.68 84.04 0.81 -17.89 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 23 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 24 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 C 0.11 2.05 6.38 86.85 0.55 2.60 16 29 C 0.05 0.63 4.76 86.45 0.41 1.04 16 30 H 0.02 0.30 7.97 -2.39 -0.02 0.28 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.04 0.57 7.97 -2.39 -0.02 0.55 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.45 6.46 -2.39 -0.02 1.44 16 37 H 0.08 0.88 6.29 -2.39 -0.02 0.86 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.08 1.31 8.01 -2.39 -0.02 1.29 16 41 H 0.08 1.56 8.11 -2.39 -0.02 1.54 16 42 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 43 H 0.34 10.34 8.43 -89.69 -0.76 9.59 16 44 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.40 18.97 7.90 -92.71 -0.73 18.23 16 47 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 48 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 49 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 50 H 0.04 0.57 7.62 -2.39 -0.02 0.56 16 51 H 0.11 1.08 7.16 -2.39 -0.02 1.07 16 Total: -1.00 -71.14 406.08 -3.70 -74.84 By element: Atomic # 1 Polarization: 38.76 SS G_CDS: -0.55 Total: 38.21 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 7.18 Total: 20.38 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -12.26 Total: -127.53 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -0.10 Total: -50.44 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -71.14 -3.70 -74.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567153115.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.824 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds