Wall clock time and date at job start Tue Mar 31 2020 22:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47905 * 111.00050 * 2 1 4 4 C 1.53991 * 107.22505 * 214.25344 * 3 2 1 5 5 C 1.54594 * 105.14285 * 1.12969 * 4 3 2 6 6 H 1.08998 * 110.72457 * 263.41948 * 5 4 3 7 7 C 1.50701 * 110.72474 * 140.31365 * 5 4 3 8 8 O 1.21275 * 120.00369 * 359.97438 * 7 5 4 9 9 N 1.34775 * 119.99719 * 180.02562 * 7 5 4 10 10 C 1.47022 * 125.65095 * 0.02562 * 9 7 5 11 11 C 1.54321 * 107.27396 * 181.02549 * 10 9 7 12 12 C 1.55162 * 102.94206 * 22.19653 * 11 10 9 13 13 H 1.08996 * 111.00475 * 82.56912 * 12 11 10 14 14 C 1.52998 * 111.00307 * 206.38675 * 12 11 10 15 15 N 1.46898 * 109.47169 * 293.54173 * 14 12 11 16 16 C 1.46897 * 110.99930 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.46979 * 180.02562 * 16 15 14 18 18 O 1.21286 * 120.00112 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99909 * 179.97438 * 17 16 15 20 20 C 1.37090 * 119.99792 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00786 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99982 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99809 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00284 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47405 * 90.00096 * 24 22 20 26 26 H 1.48500 * 109.47432 * 210.00314 * 24 22 20 27 27 H 1.48504 * 109.46922 * 329.99825 * 24 22 20 28 28 C 1.47430 * 125.64663 * 179.71615 * 9 7 5 29 29 C 1.48813 * 111.18681 * 242.66666 * 2 1 3 30 30 H 1.09003 * 109.47065 * 59.87544 * 1 2 3 31 31 H 1.08999 * 109.47271 * 179.87278 * 1 2 3 32 32 H 1.09003 * 109.47401 * 299.87547 * 1 2 3 33 33 H 1.09002 * 109.91668 * 94.80258 * 3 2 1 34 34 H 1.09002 * 109.91761 * 333.70433 * 3 2 1 35 35 H 1.09005 * 110.30467 * 120.04331 * 4 3 2 36 36 H 1.08997 * 110.31304 * 242.20852 * 4 3 2 37 37 H 1.08997 * 109.88665 * 300.44361 * 10 9 7 38 38 H 1.08998 * 109.87958 * 61.45510 * 10 9 7 39 39 H 1.08995 * 110.72127 * 140.55537 * 11 10 9 40 40 H 1.09008 * 110.72234 * 263.83478 * 11 10 9 41 41 H 1.08999 * 109.47615 * 53.54596 * 14 12 11 42 42 H 1.09001 * 109.46735 * 173.54231 * 14 12 11 43 43 H 1.00895 * 111.00021 * 303.95931 * 15 14 12 44 44 H 1.09007 * 109.47306 * 300.00042 * 16 15 14 45 45 H 1.08995 * 109.47504 * 60.00126 * 16 15 14 46 46 H 0.96999 * 119.99691 * 0.02562 * 19 17 16 47 47 H 0.97005 * 120.00150 * 179.97438 * 23 22 20 48 48 H 1.08994 * 110.36464 * 274.74385 * 28 9 7 49 49 H 1.08999 * 110.36532 * 37.06922 * 28 9 7 50 50 H 1.08998 * 110.51915 * 41.07024 * 29 2 1 51 51 H 1.09009 * 110.83927 * 278.09443 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2974 1.3708 -0.8279 5 6 3.4527 -0.0871 -1.3180 6 1 4.1201 -0.6456 -0.6617 7 6 3.9534 -0.1216 -2.7390 8 8 4.1737 0.9144 -3.3296 9 7 4.1554 -1.3039 -3.3537 10 6 3.9284 -2.6290 -2.7586 11 6 4.3174 -3.6803 -3.8192 12 6 5.2767 -2.8946 -4.7518 13 1 6.2872 -2.8725 -4.3438 14 6 5.2716 -3.4822 -6.1645 15 7 5.8527 -4.8311 -6.1359 16 6 5.8647 -5.4276 -7.4782 17 6 6.4659 -6.8079 -7.4091 18 8 6.8463 -7.2511 -6.3462 19 7 6.5798 -7.5501 -8.5283 20 6 7.1271 -8.8054 -8.4655 21 1 7.4674 -9.1995 -7.5194 22 6 7.2451 -9.5704 -9.6195 23 7 6.8324 -9.0904 -10.7711 24 14 7.9915 -11.2807 -9.5341 25 1 6.9194 -12.2766 -9.2815 26 1 8.6634 -11.5924 -10.8212 27 1 8.9852 -11.3326 -8.4318 28 6 4.6345 -1.4825 -4.7365 29 6 2.0068 -0.6371 -1.2326 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3634 -1.0276 -0.0023 32 1 -0.3634 0.5119 0.8911 33 1 2.2122 1.6967 1.0212 34 1 1.2744 2.0567 -0.4540 35 1 3.2096 2.0482 -1.6774 36 1 4.1459 1.6528 -0.2044 37 1 4.5510 -2.7488 -1.8720 38 1 2.8775 -2.7401 -2.4912 39 1 4.8328 -4.5221 -3.3568 40 1 3.4381 -4.0189 -4.3673 41 1 4.2468 -3.5358 -6.5320 42 1 5.8615 -2.8463 -6.8246 43 1 6.7799 -4.8169 -5.7384 44 1 4.8442 -5.4947 -7.8552 45 1 6.4590 -4.8052 -8.1471 46 1 6.2752 -7.1957 -9.3783 47 1 6.9150 -9.6242 -11.5768 48 1 3.8001 -1.4349 -5.4361 49 1 5.3792 -0.7249 -4.9807 50 1 1.4273 -0.3326 -2.1041 51 1 2.0132 -1.7230 -1.1368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567153117.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:17 Heat of formation + Delta-G solvation = -62.464774 kcal Electronic energy + Delta-G solvation = -28831.093386 eV Core-core repulsion = 24765.026682 eV Total energy + Delta-G solvation = -4066.066705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.78913 -39.02938 -38.29989 -37.67084 -35.42256 -33.88634 -32.86295 -31.91231 -31.20528 -29.84117 -29.38699 -27.28523 -26.30521 -24.96803 -23.79311 -22.95179 -21.94380 -21.43413 -20.62370 -19.30545 -19.18788 -17.91424 -17.79230 -16.67387 -16.42669 -15.98746 -15.82714 -15.57789 -15.12824 -14.72177 -14.53222 -14.51233 -14.30780 -13.94179 -13.90810 -13.69733 -13.49944 -13.35523 -12.96209 -12.92599 -12.79182 -12.26040 -12.04927 -11.96460 -11.87722 -11.77686 -11.67459 -11.61748 -11.53659 -11.17778 -11.11665 -11.08904 -10.95362 -10.79281 -10.40662 -10.23305 -10.13471 -9.52397 -8.98506 -8.91654 -8.48784 -8.09246 -7.97536 -6.43175 -3.84081 2.28431 2.61275 3.16885 3.25656 3.31308 3.51898 3.88811 3.95420 4.04529 4.12170 4.19799 4.35678 4.39190 4.56491 4.68932 4.77041 4.85090 4.86664 4.92808 4.97436 5.01168 5.09952 5.13132 5.16887 5.22270 5.25911 5.33948 5.39124 5.42161 5.44426 5.50178 5.54871 5.63445 5.67401 5.71730 5.76985 5.81492 5.93610 5.95604 6.05297 6.16011 6.24580 6.30849 6.46694 7.15548 7.20332 7.53769 7.61141 7.83863 8.04734 8.59621 9.16374 9.52794 10.04060 10.74498 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031311 B = 0.001566 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.039119 B =17873.360852 C =18288.697991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.520 5.520 3 C 0.034 3.966 4 C -0.118 4.118 5 C -0.110 4.110 6 H 0.110 0.890 7 C 0.536 3.464 8 O -0.541 6.541 9 N -0.615 5.615 10 C 0.093 3.907 11 C -0.114 4.114 12 C -0.097 4.097 13 H 0.085 0.915 14 C 0.069 3.931 15 N -0.666 5.666 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.111 3.889 29 C 0.046 3.954 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.349 0.651 44 H 0.086 0.914 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.050 0.950 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.998 19.903 17.084 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.244 5.244 3 C -0.094 4.094 4 C -0.157 4.157 5 C -0.131 4.131 6 H 0.128 0.872 7 C 0.324 3.676 8 O -0.418 6.418 9 N -0.349 5.349 10 C -0.029 4.029 11 C -0.152 4.152 12 C -0.117 4.117 13 H 0.104 0.896 14 C -0.061 4.061 15 N -0.298 5.298 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.012 4.012 29 C -0.082 4.082 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.168 0.832 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.068 0.932 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.077 19.555 17.990 28.788 hybrid contribution 0.530 0.189 -1.782 1.869 sum -10.548 19.743 16.208 27.636 Atomic orbital electron populations 1.22537 0.87375 1.02493 1.00979 1.64817 1.08477 1.15178 1.35963 1.22930 0.95846 0.89767 1.00857 1.22376 0.97765 0.95146 1.00396 1.22168 0.98049 0.99353 0.93561 0.87232 1.20064 0.77411 0.82052 0.88029 1.90695 1.52110 1.32081 1.66930 1.48486 1.65836 1.05824 1.14757 1.22292 1.01120 0.81971 0.97547 1.22583 0.99939 0.96937 0.95706 1.22377 0.99826 0.93107 0.96343 0.89619 1.21862 1.00482 0.89329 0.94388 1.60053 1.29396 1.18887 1.21502 1.21668 1.01376 0.95120 0.90028 1.19804 0.85309 0.87204 0.85083 1.90518 1.53985 1.73164 1.29118 1.41866 1.54520 1.15202 1.08439 1.19704 1.36361 0.90850 0.96050 0.87908 1.25266 0.97742 1.00233 0.94694 1.69614 1.47292 1.38475 0.98909 0.85851 0.79133 0.81650 0.77612 1.20388 1.20946 1.19432 1.22286 0.98838 0.97142 0.82922 1.23268 0.92713 1.00396 0.91842 0.95241 0.90972 0.91019 0.89946 0.93445 0.89355 0.90350 0.91154 0.91199 0.88941 0.90129 0.90731 0.95122 0.83165 0.89611 0.93872 0.77463 0.91869 0.91144 0.90383 0.93212 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.41 60.06 0.57 0.65 16 2 N -0.52 -3.84 5.56 -238.46 -1.33 -5.16 16 3 C 0.03 0.23 6.69 -2.75 -0.02 0.21 16 4 C -0.12 -0.93 6.33 -25.38 -0.16 -1.09 16 5 C -0.11 -0.88 2.85 -89.91 -0.26 -1.14 16 6 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 7 C 0.54 5.76 7.19 -10.99 -0.08 5.68 16 8 O -0.54 -7.72 15.69 5.56 0.09 -7.64 16 9 N -0.62 -5.83 3.32 -170.38 -0.57 -6.40 16 10 C 0.09 0.70 6.11 -3.07 -0.02 0.68 16 11 C -0.11 -1.00 6.25 -24.90 -0.16 -1.16 16 12 C -0.10 -0.91 3.24 -88.34 -0.29 -1.20 16 13 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 14 C 0.07 0.76 5.13 -3.83 -0.02 0.74 16 15 N -0.67 -9.83 5.95 -115.06 -0.68 -10.51 16 16 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 17 C 0.44 10.15 7.82 -10.98 -0.09 10.06 16 18 O -0.58 -15.48 15.78 5.55 0.09 -15.39 16 19 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 20 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 24 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 C 0.11 1.06 6.38 -2.40 -0.02 1.05 16 29 C 0.05 0.33 5.30 -1.74 -0.01 0.33 16 30 H 0.03 0.17 8.01 -51.93 -0.42 -0.24 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.31 7.73 -51.93 -0.40 -0.09 16 35 H 0.09 0.85 6.85 -51.93 -0.36 0.49 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.44 6.24 -51.93 -0.32 0.12 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.74 8.01 -51.92 -0.42 0.32 16 41 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.35 5.38 8.43 -39.29 -0.33 5.05 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 48 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 49 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 50 H 0.05 0.40 7.87 -51.93 -0.41 0.00 16 51 H 0.09 0.58 6.48 -51.92 -0.34 0.25 16 LS Contribution 406.30 15.07 6.12 6.12 Total: -1.00 -32.69 406.30 -10.18 -42.87 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.73 Total: 10.32 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -0.81 Total: 7.69 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -1.91 Total: -59.82 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.69 -10.18 -42.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567153117.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.597 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds