Wall clock time and date at job start Tue Mar 31 2020 22:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47905 * 111.00050 * 2 1 4 4 C 1.53991 * 107.22505 * 214.25344 * 3 2 1 5 5 C 1.54594 * 105.14285 * 1.12969 * 4 3 2 6 6 H 1.08998 * 110.72457 * 263.41948 * 5 4 3 7 7 C 1.50701 * 110.72474 * 140.31365 * 5 4 3 8 8 O 1.21275 * 120.00369 * 359.97438 * 7 5 4 9 9 N 1.34775 * 119.99719 * 180.02562 * 7 5 4 10 10 C 1.47022 * 125.65095 * 0.02562 * 9 7 5 11 11 C 1.54321 * 107.27396 * 181.02549 * 10 9 7 12 12 C 1.55162 * 102.94206 * 22.19653 * 11 10 9 13 13 H 1.08996 * 111.00475 * 82.56912 * 12 11 10 14 14 C 1.52998 * 111.00307 * 206.38675 * 12 11 10 15 15 N 1.46898 * 109.47169 * 293.54173 * 14 12 11 16 16 C 1.46897 * 110.99930 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.46979 * 180.02562 * 16 15 14 18 18 O 1.21286 * 120.00112 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99909 * 179.97438 * 17 16 15 20 20 C 1.37090 * 119.99792 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00786 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99982 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99809 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00284 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47405 * 90.00096 * 24 22 20 26 26 H 1.48500 * 109.47432 * 210.00314 * 24 22 20 27 27 H 1.48504 * 109.46922 * 329.99825 * 24 22 20 28 28 C 1.47430 * 125.64663 * 179.71615 * 9 7 5 29 29 C 1.48813 * 111.18681 * 242.66666 * 2 1 3 30 30 H 1.09003 * 109.47065 * 59.87544 * 1 2 3 31 31 H 1.08999 * 109.47271 * 179.87278 * 1 2 3 32 32 H 1.09003 * 109.47401 * 299.87547 * 1 2 3 33 33 H 1.09002 * 109.91668 * 94.80258 * 3 2 1 34 34 H 1.09002 * 109.91761 * 333.70433 * 3 2 1 35 35 H 1.09005 * 110.30467 * 120.04331 * 4 3 2 36 36 H 1.08997 * 110.31304 * 242.20852 * 4 3 2 37 37 H 1.08997 * 109.88665 * 300.44361 * 10 9 7 38 38 H 1.08998 * 109.87958 * 61.45510 * 10 9 7 39 39 H 1.08995 * 110.72127 * 140.55537 * 11 10 9 40 40 H 1.09008 * 110.72234 * 263.83478 * 11 10 9 41 41 H 1.08999 * 109.47615 * 53.54596 * 14 12 11 42 42 H 1.09001 * 109.46735 * 173.54231 * 14 12 11 43 43 H 1.00895 * 111.00021 * 303.95931 * 15 14 12 44 44 H 1.09007 * 109.47306 * 300.00042 * 16 15 14 45 45 H 1.08995 * 109.47504 * 60.00126 * 16 15 14 46 46 H 0.96999 * 119.99691 * 0.02562 * 19 17 16 47 47 H 0.97005 * 120.00150 * 179.97438 * 23 22 20 48 48 H 1.08994 * 110.36464 * 274.74385 * 28 9 7 49 49 H 1.08999 * 110.36532 * 37.06922 * 28 9 7 50 50 H 1.08998 * 110.51915 * 41.07024 * 29 2 1 51 51 H 1.09009 * 110.83927 * 278.09443 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2974 1.3708 -0.8279 5 6 3.4527 -0.0871 -1.3180 6 1 4.1201 -0.6456 -0.6617 7 6 3.9534 -0.1216 -2.7390 8 8 4.1737 0.9144 -3.3296 9 7 4.1554 -1.3039 -3.3537 10 6 3.9284 -2.6290 -2.7586 11 6 4.3174 -3.6803 -3.8192 12 6 5.2767 -2.8946 -4.7518 13 1 6.2872 -2.8725 -4.3438 14 6 5.2716 -3.4822 -6.1645 15 7 5.8527 -4.8311 -6.1359 16 6 5.8647 -5.4276 -7.4782 17 6 6.4659 -6.8079 -7.4091 18 8 6.8463 -7.2511 -6.3462 19 7 6.5798 -7.5501 -8.5283 20 6 7.1271 -8.8054 -8.4655 21 1 7.4674 -9.1995 -7.5194 22 6 7.2451 -9.5704 -9.6195 23 7 6.8324 -9.0904 -10.7711 24 14 7.9915 -11.2807 -9.5341 25 1 6.9194 -12.2766 -9.2815 26 1 8.6634 -11.5924 -10.8212 27 1 8.9852 -11.3326 -8.4318 28 6 4.6345 -1.4825 -4.7365 29 6 2.0068 -0.6371 -1.2326 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3634 -1.0276 -0.0023 32 1 -0.3634 0.5119 0.8911 33 1 2.2122 1.6967 1.0212 34 1 1.2744 2.0567 -0.4540 35 1 3.2096 2.0482 -1.6774 36 1 4.1459 1.6528 -0.2044 37 1 4.5510 -2.7488 -1.8720 38 1 2.8775 -2.7401 -2.4912 39 1 4.8328 -4.5221 -3.3568 40 1 3.4381 -4.0189 -4.3673 41 1 4.2468 -3.5358 -6.5320 42 1 5.8615 -2.8463 -6.8246 43 1 6.7799 -4.8169 -5.7384 44 1 4.8442 -5.4947 -7.8552 45 1 6.4590 -4.8052 -8.1471 46 1 6.2752 -7.1957 -9.3783 47 1 6.9150 -9.6242 -11.5768 48 1 3.8001 -1.4349 -5.4361 49 1 5.3792 -0.7249 -4.9807 50 1 1.4273 -0.3326 -2.1041 51 1 2.0132 -1.7230 -1.1368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567153117.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:16 Heat of formation + Delta-G solvation = -87.668471 kcal Electronic energy + Delta-G solvation = -28832.186301 eV Core-core repulsion = 24765.026682 eV Total energy + Delta-G solvation = -4067.159619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54284 -40.16928 -39.59316 -38.55181 -36.63417 -35.79716 -33.59439 -33.25083 -32.68794 -30.53099 -30.13426 -28.54516 -27.01583 -26.39817 -24.88042 -23.93058 -22.58531 -22.01333 -21.52590 -20.92226 -20.01317 -19.87305 -18.53958 -17.87853 -17.21609 -17.06213 -16.78060 -16.68235 -16.41590 -16.06037 -15.83877 -15.27541 -15.20758 -15.12881 -14.96468 -14.66452 -14.54369 -14.17148 -13.97931 -13.74505 -13.68406 -13.51586 -13.39998 -13.16405 -12.83380 -12.65570 -12.55456 -12.50011 -12.46107 -12.40538 -12.23502 -12.12002 -11.97279 -11.82291 -11.70283 -11.54366 -11.48770 -10.99656 -10.32344 -10.00001 -9.72041 -9.50059 -9.29168 -8.45539 -5.94154 1.39198 1.43058 1.47715 1.55538 1.86759 2.07482 2.30268 2.90020 2.96537 3.22124 3.37815 3.45807 3.54743 3.66244 3.69656 3.84997 3.97120 4.14458 4.20584 4.28300 4.31207 4.34760 4.37722 4.44196 4.48776 4.49710 4.54641 4.58424 4.60482 4.62958 4.74058 4.76737 4.82725 4.89324 4.94372 5.00385 5.01002 5.05975 5.12952 5.20138 5.31410 5.41009 5.42238 5.76532 5.89590 5.95686 6.11231 6.40795 6.45097 6.61553 7.03200 7.14070 7.58244 8.13336 8.71772 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031311 B = 0.001566 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.039119 B =17873.360852 C =18288.697991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.528 5.528 3 C 0.036 3.964 4 C -0.118 4.118 5 C -0.105 4.105 6 H 0.124 0.876 7 C 0.533 3.467 8 O -0.584 6.584 9 N -0.614 5.614 10 C 0.096 3.904 11 C -0.111 4.111 12 C -0.089 4.089 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.675 5.675 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.273 1.273 28 C 0.113 3.887 29 C 0.050 3.950 30 H 0.026 0.974 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.344 0.656 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.075 0.925 49 H 0.067 0.933 50 H 0.039 0.961 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.773 19.792 17.768 29.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.252 5.252 3 C -0.092 4.092 4 C -0.157 4.157 5 C -0.126 4.126 6 H 0.142 0.858 7 C 0.322 3.678 8 O -0.464 6.464 9 N -0.347 5.347 10 C -0.026 4.026 11 C -0.149 4.149 12 C -0.108 4.108 13 H 0.101 0.899 14 C -0.056 4.056 15 N -0.308 5.308 16 C -0.067 4.067 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.212 5.212 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.198 1.198 28 C -0.011 4.011 29 C -0.078 4.078 30 H 0.045 0.955 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.162 0.838 44 H 0.123 0.877 45 H 0.082 0.918 46 H 0.230 0.770 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.057 0.943 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.877 19.445 18.667 29.456 hybrid contribution 0.756 0.269 -1.972 2.129 sum -11.120 19.714 16.695 28.125 Atomic orbital electron populations 1.22588 0.86522 1.03075 1.01290 1.64862 1.09359 1.15246 1.35714 1.22934 0.95225 0.89780 1.01219 1.22352 0.98761 0.94691 0.99886 1.22180 0.98773 0.99755 0.91915 0.85801 1.20521 0.76798 0.81638 0.88839 1.90674 1.54101 1.33564 1.68084 1.48565 1.65033 1.06343 1.14742 1.22387 1.02510 0.80328 0.97355 1.22538 0.99565 0.96927 0.95856 1.22252 0.99895 0.92979 0.95704 0.89899 1.21902 1.00713 0.87449 0.95522 1.60050 1.29248 1.21203 1.20255 1.21526 1.02029 0.91416 0.91766 1.20899 0.83729 0.88983 0.83811 1.90487 1.55282 1.74632 1.30424 1.41943 1.55064 1.14926 1.09250 1.19675 1.38349 0.92647 0.95697 0.90251 1.26031 0.97635 1.03540 0.94073 1.69674 1.47449 1.39726 0.99315 0.84928 0.78361 0.77243 0.77811 1.19665 1.19660 1.19756 1.22234 0.98752 0.96731 0.83344 1.23254 0.91838 1.01110 0.91570 0.95514 0.90279 0.90144 0.88854 0.93489 0.91504 0.89532 0.89808 0.89459 0.89673 0.90206 0.89819 0.94188 0.83767 0.87729 0.91771 0.77006 0.91352 0.90685 0.91497 0.94281 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.41 127.69 1.20 1.34 16 2 N -0.53 -6.83 5.56 -908.37 -5.05 -11.88 16 3 C 0.04 0.45 6.69 86.44 0.58 1.03 16 4 C -0.12 -1.79 6.33 31.47 0.20 -1.59 16 5 C -0.10 -1.56 2.85 -10.34 -0.03 -1.59 16 6 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 7 C 0.53 11.12 7.19 87.66 0.63 11.75 16 8 O -0.58 -16.93 15.69 -3.01 -0.05 -16.98 16 9 N -0.61 -10.88 3.32 -811.34 -2.70 -13.58 16 10 C 0.10 1.23 6.11 86.73 0.53 1.76 16 11 C -0.11 -1.76 6.25 31.78 0.20 -1.56 16 12 C -0.09 -1.54 3.24 -9.32 -0.03 -1.57 16 13 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 14 C 0.07 1.46 5.13 86.30 0.44 1.90 16 15 N -0.68 -19.02 5.95 -517.93 -3.08 -22.10 16 16 C 0.07 2.09 6.17 85.56 0.53 2.62 16 17 C 0.44 20.21 7.82 87.66 0.69 20.90 16 18 O -0.62 -33.47 15.78 -3.05 -0.05 -33.52 16 19 N -0.57 -28.98 5.29 -306.99 -1.62 -30.60 16 20 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.27 13.05 21.66 0.28 -48.98 16 24 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 C 0.11 2.04 6.38 86.94 0.55 2.59 16 29 C 0.05 0.65 5.30 86.59 0.46 1.11 16 30 H 0.03 0.28 8.01 -2.39 -0.02 0.26 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.59 7.73 -2.39 -0.02 0.57 16 35 H 0.07 1.32 6.85 -2.38 -0.02 1.30 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.86 6.24 -2.39 -0.01 0.84 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.30 8.01 -2.38 -0.02 1.28 16 41 H 0.08 1.54 8.11 -2.39 -0.02 1.53 16 42 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.34 10.34 8.43 -89.70 -0.76 9.59 16 44 H 0.10 3.01 8.14 -2.38 -0.02 2.99 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 47 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 48 H 0.07 1.30 8.04 -2.39 -0.02 1.28 16 49 H 0.07 1.38 8.03 -2.39 -0.02 1.36 16 50 H 0.04 0.59 7.87 -2.39 -0.02 0.57 16 51 H 0.11 1.06 6.48 -2.38 -0.02 1.04 16 Total: -1.00 -70.99 406.30 -3.56 -74.55 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: -0.55 Total: 38.06 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 7.23 Total: 20.49 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -12.17 Total: -127.15 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -0.10 Total: -50.50 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -70.99 -3.56 -74.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567153117.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.122 kcal (2) G-P(sol) polarization free energy of solvation -70.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds