Wall clock time and date at job start Tue Mar 31 2020 22:11:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.48534 * 111.00521 * 2 1
4 4 C 1.54931 * 103.22928 * 159.71667 * 3 2 1
5 5 C 1.54590 * 102.92558 * 322.58428 * 4 3 2
6 6 C 1.47905 * 110.99632 * 117.39482 * 2 1 3
7 7 H 1.09006 * 110.08335 * 333.59463 * 6 2 1
8 8 C 1.50697 * 109.92094 * 94.80038 * 6 2 1
9 9 O 1.21276 * 120.00169 * 17.58991 * 8 6 2
10 10 N 1.34775 * 120.00033 * 197.58728 * 8 6 2
11 11 C 1.46498 * 119.99949 * 179.97438 * 10 8 6
12 12 C 1.52999 * 109.47324 * 180.02562 * 11 10 8
13 13 H 1.09007 * 110.28609 * 304.32563 * 12 11 10
14 14 C 1.54259 * 110.32790 * 66.45016 * 12 11 10
15 15 C 1.54383 * 105.05968 * 118.90003 * 14 12 11
16 16 N 1.48557 * 104.59612 * 23.85321 * 15 14 12
17 17 C 1.46891 * 111.00080 * 200.96001 * 16 15 14
18 18 C 1.50705 * 109.47015 * 176.49132 * 17 16 15
19 19 O 1.21283 * 119.99990 * 6.06429 * 18 17 16
20 20 N 1.34779 * 119.99856 * 186.05779 * 18 17 16
21 21 C 1.37094 * 119.99964 * 180.02562 * 20 18 17
22 22 H 1.08003 * 120.00061 * 0.02562 * 21 20 18
23 23 C 1.38948 * 120.00130 * 179.97438 * 21 20 18
24 24 N 1.31419 * 120.00197 * 0.02562 * 23 21 20
25 25 Si 1.86802 * 120.00286 * 179.97438 * 23 21 20
26 26 H 1.48501 * 109.46624 * 60.00290 * 25 23 21
27 27 H 1.48492 * 109.47404 * 180.02562 * 25 23 21
28 28 H 1.48498 * 109.47083 * 300.00662 * 25 23 21
29 29 C 1.48563 * 104.22380 * 320.51988 * 16 15 14
30 30 H 1.08999 * 109.46848 * 302.61570 * 1 2 3
31 31 H 1.09005 * 109.46205 * 62.60549 * 1 2 3
32 32 H 1.08993 * 109.47518 * 182.60755 * 1 2 3
33 33 H 1.08994 * 110.66550 * 41.28173 * 3 2 1
34 34 H 1.09000 * 110.80695 * 278.21907 * 3 2 1
35 35 H 1.09000 * 110.72159 * 204.22135 * 4 3 2
36 36 H 1.09006 * 110.87874 * 81.01279 * 4 3 2
37 37 H 1.09000 * 110.31180 * 263.04264 * 5 4 3
38 38 H 1.08999 * 110.31658 * 140.87305 * 5 4 3
39 39 H 0.97007 * 120.00041 * 0.02562 * 10 8 6
40 40 H 1.09003 * 109.47397 * 299.99992 * 11 10 8
41 41 H 1.08999 * 109.47485 * 60.00320 * 11 10 8
42 42 H 1.09000 * 110.32651 * 237.79726 * 14 12 11
43 43 H 1.09000 * 110.31937 * 0.02562 * 14 12 11
44 44 H 1.08994 * 110.40941 * 142.63808 * 15 14 12
45 45 H 1.09004 * 110.40723 * 265.07754 * 15 14 12
46 46 H 1.09006 * 109.47393 * 296.49479 * 17 16 15
47 47 H 1.09006 * 109.47351 * 56.49452 * 17 16 15
48 48 H 0.97001 * 119.99984 * 0.02562 * 20 18 17
49 49 H 0.96994 * 119.99815 * 179.97438 * 24 23 21
50 50 H 1.09004 * 110.40947 * 280.70316 * 29 16 15
51 51 H 1.08995 * 110.41422 * 158.25795 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 2.0014 1.3866 0.0000
4 6 3.4492 1.2105 0.5228
5 6 3.2983 0.1054 1.5932
6 6 1.9990 -0.6354 1.2260
7 1 1.2770 -0.5431 2.0375
8 6 2.2936 -2.0899 0.9643
9 8 2.3969 -2.4922 -0.1751
10 7 2.4425 -2.9436 1.9964
11 6 2.7284 -4.3577 1.7420
12 6 2.8487 -5.1014 3.0736
13 1 3.6032 -4.6295 3.7032
14 6 1.4869 -5.1276 3.7978
15 6 1.1319 -6.6242 3.9304
16 7 2.4395 -7.3263 3.8667
17 6 2.2634 -8.7336 3.4844
18 6 3.6132 -9.3894 3.3464
19 8 4.6170 -8.7813 3.6524
20 7 3.7049 -10.6516 2.8829
21 6 4.9328 -11.2484 2.7578
22 1 5.8266 -10.7072 3.0310
23 6 5.0274 -12.5499 2.2806
24 7 3.9398 -13.2087 1.9486
25 14 6.7005 -13.3628 2.1094
26 1 7.3617 -13.4190 3.4379
27 1 6.5299 -14.7405 1.5823
28 1 7.5401 -12.5748 1.1716
29 6 3.2020 -6.5843 2.8297
30 1 -0.3633 0.5539 0.8656
31 1 -0.3632 0.4729 -0.9125
32 1 -0.3634 -1.0265 0.0467
33 1 1.4239 2.0204 0.6728
34 1 2.0042 1.8003 -1.0084
35 1 3.8123 2.1351 0.9715
36 1 4.1141 0.8846 -0.2770
37 1 3.2136 0.5486 2.5854
38 1 4.1469 -0.5775 1.5543
39 1 2.3596 -2.6219 2.9078
40 1 1.9189 -4.7923 1.1555
41 1 3.6644 -4.4457 1.1905
42 1 1.5733 -4.6702 4.7834
43 1 0.7326 -4.6110 3.2042
44 1 0.6436 -6.8158 4.8858
45 1 0.4916 -6.9375 3.1057
46 1 1.6857 -9.2490 4.2518
47 1 1.7339 -8.7883 2.5331
48 1 2.9022 -11.1379 2.6379
49 1 4.0059 -14.1171 1.6151
50 1 2.8857 -6.8914 1.8328
51 1 4.2724 -6.7459 2.9565
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001567395644.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:11:11
Heat of formation + Delta-G solvation = -56.408514 kcal
Electronic energy + Delta-G solvation = -29308.954217 eV
Core-core repulsion = 25243.150132 eV
Total energy + Delta-G solvation = -4065.804086 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.50732 -39.36349 -38.24591 -37.51162 -35.00557 -33.88740 -32.68048 -32.06091
-31.17513 -30.09973 -29.07484 -27.00482 -26.10898 -25.17993 -24.00451 -22.37957
-21.61323 -21.24858 -20.30345 -19.90422 -19.13085 -17.85048 -17.60187 -16.69691
-16.28213 -16.09832 -15.62535 -15.34584 -14.99421 -14.91617 -14.52873 -14.43346
-14.18558 -14.10758 -13.74963 -13.70075 -13.44943 -13.09539 -12.88694 -12.53572
-12.40098 -12.32570 -11.97797 -11.95136 -11.81117 -11.77104 -11.50459 -11.48577
-11.25716 -11.20633 -11.05158 -10.96559 -10.79577 -10.52228 -10.42506 -10.20274
-9.88761 -9.46569 -9.17777 -8.81978 -8.45313 -8.04306 -7.92874 -6.40464
-3.81308 2.51289 2.82286 3.21215 3.26912 3.31251 3.67166 3.91470
4.06260 4.14314 4.18536 4.26314 4.42361 4.59771 4.64351 4.73190
4.77087 4.81358 4.95690 4.96523 5.07178 5.14451 5.19491 5.23326
5.26738 5.31647 5.35953 5.42511 5.47809 5.51058 5.59633 5.70676
5.71993 5.72725 5.75869 5.80554 5.87718 5.93672 6.06446 6.20045
6.28069 6.30925 6.37846 6.51858 6.53560 7.13191 7.23541 7.37336
7.56153 8.06967 8.15148 8.62719 9.19020 9.55292 10.06986 10.77190
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.020362 B = 0.001853 C = 0.001788
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1374.768484 B =15106.062008 C =15655.947946
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 N -0.499 5.499
3 C 0.036 3.964
4 C -0.123 4.123
5 C -0.121 4.121
6 C 0.048 3.952
7 H 0.074 0.926
8 C 0.517 3.483
9 O -0.514 6.514
10 N -0.731 5.731
11 C 0.129 3.871
12 C -0.105 4.105
13 H 0.086 0.914
14 C -0.119 4.119
15 C 0.028 3.972
16 N -0.485 5.485
17 C 0.034 3.966
18 C 0.443 3.557
19 O -0.579 6.579
20 N -0.563 5.563
21 C -0.299 4.299
22 H 0.103 0.897
23 C 0.022 3.978
24 N -0.902 5.902
25 Si 0.931 3.069
26 H -0.274 1.274
27 H -0.285 1.285
28 H -0.274 1.274
29 C 0.045 3.955
30 H 0.028 0.972
31 H 0.074 0.926
32 H 0.069 0.931
33 H 0.047 0.953
34 H 0.087 0.913
35 H 0.076 0.924
36 H 0.079 0.921
37 H 0.078 0.922
38 H 0.079 0.921
39 H 0.398 0.602
40 H 0.067 0.933
41 H 0.070 0.930
42 H 0.071 0.929
43 H 0.067 0.933
44 H 0.079 0.921
45 H 0.041 0.959
46 H 0.091 0.909
47 H 0.048 0.952
48 H 0.392 0.608
49 H 0.272 0.728
50 H 0.040 0.960
51 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.392 27.520 1.032 29.096
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 N -0.223 5.223
3 C -0.092 4.092
4 C -0.161 4.161
5 C -0.159 4.159
6 C -0.064 4.064
7 H 0.091 0.909
8 C 0.301 3.699
9 O -0.388 6.388
10 N -0.385 5.385
11 C 0.005 3.995
12 C -0.124 4.124
13 H 0.104 0.896
14 C -0.157 4.157
15 C -0.100 4.100
16 N -0.209 5.209
17 C -0.097 4.097
18 C 0.228 3.772
19 O -0.463 6.463
20 N -0.200 5.200
21 C -0.429 4.429
22 H 0.120 0.880
23 C -0.180 4.180
24 N -0.543 5.543
25 Si 0.758 3.242
26 H -0.199 1.199
27 H -0.210 1.210
28 H -0.199 1.199
29 C -0.083 4.083
30 H 0.047 0.953
31 H 0.093 0.907
32 H 0.088 0.912
33 H 0.065 0.935
34 H 0.105 0.895
35 H 0.095 0.905
36 H 0.098 0.902
37 H 0.097 0.903
38 H 0.097 0.903
39 H 0.232 0.768
40 H 0.085 0.915
41 H 0.089 0.911
42 H 0.090 0.910
43 H 0.086 0.914
44 H 0.098 0.902
45 H 0.059 0.941
46 H 0.109 0.891
47 H 0.066 0.934
48 H 0.225 0.775
49 H 0.082 0.918
50 H 0.059 0.941
51 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -8.238 27.100 0.347 28.327
hybrid contribution -0.661 -0.451 0.155 0.815
sum -8.898 26.649 0.501 28.100
Atomic orbital electron populations
1.22544 0.87167 1.02349 1.01064 1.64326 1.08306 1.14562 1.35089
1.23271 0.95015 0.89223 1.01643 1.22487 0.96808 0.98265 0.98527
1.22360 0.96148 0.97846 0.99545 1.22367 0.98219 0.92892 0.92957
0.90866 1.20370 0.77132 0.87225 0.85188 1.90718 1.48284 1.78118
1.21646 1.46044 1.73815 1.09364 1.09245 1.21441 1.01653 0.79488
0.96913 1.22189 0.98080 0.96817 0.95355 0.89554 1.22382 0.96301
0.96409 1.00637 1.23166 0.92156 0.93550 1.01148 1.65186 1.11821
1.00688 1.43215 1.22077 0.97528 0.90075 1.00062 1.19701 0.89875
0.83323 0.84311 1.90486 1.37482 1.63927 1.54440 1.41861 1.09599
1.11746 1.56784 1.19646 0.86115 0.96474 1.40631 0.87956 1.25267
0.99020 0.96586 0.97086 1.69606 1.27940 1.12550 1.44220 0.85914
0.81572 0.77896 0.78815 1.19896 1.20993 1.19908 1.23147 1.02167
0.89857 0.93108 0.95313 0.90736 0.91232 0.93506 0.89485 0.90532
0.90244 0.90311 0.90276 0.76817 0.91518 0.91129 0.90983 0.91398
0.90231 0.94083 0.89115 0.93388 0.77488 0.91826 0.94130 0.87467
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.13 9.40 60.06 0.56 0.70 16
2 N -0.50 -4.65 4.76 -232.16 -1.10 -5.75 16
3 C 0.04 0.24 6.56 -1.90 -0.01 0.23 16
4 C -0.12 -0.77 7.06 -24.88 -0.18 -0.95 16
5 C -0.12 -0.79 6.56 -25.37 -0.17 -0.96 16
6 C 0.05 0.40 2.87 -67.79 -0.19 0.20 16
7 H 0.07 0.46 7.74 -51.93 -0.40 0.06 16
8 C 0.52 5.91 6.87 -10.99 -0.08 5.83 16
9 O -0.51 -8.37 16.56 5.56 0.09 -8.28 16
10 N -0.73 -6.86 5.32 -60.30 -0.32 -7.18 16
11 C 0.13 1.48 4.76 -4.04 -0.02 1.46 16
12 C -0.10 -1.21 3.13 -89.24 -0.28 -1.49 16
13 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16
14 C -0.12 -1.20 6.33 -25.35 -0.16 -1.36 16
15 C 0.03 0.35 6.49 -2.18 -0.01 0.33 16
16 N -0.49 -8.02 5.18 -231.41 -1.20 -9.22 16
17 C 0.03 0.62 5.38 -4.98 -0.03 0.59 16
18 C 0.44 10.48 7.43 -10.98 -0.08 10.40 16
19 O -0.58 -15.52 14.01 5.56 0.08 -15.44 16
20 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16
21 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16
22 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16
23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
24 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16
25 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16
26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
29 C 0.05 0.73 5.12 -2.18 -0.01 0.72 16
30 H 0.03 0.17 8.01 -51.93 -0.42 -0.25 16
31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
33 H 0.05 0.25 7.96 -51.93 -0.41 -0.16 16
34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16
35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16
36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
38 H 0.08 0.60 7.68 -51.93 -0.40 0.20 16
39 H 0.40 2.61 8.32 -40.82 -0.34 2.27 16
40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
43 H 0.07 0.60 7.63 -51.93 -0.40 0.21 16
44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
45 H 0.04 0.49 7.92 -51.93 -0.41 0.08 16
46 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16
47 H 0.05 0.80 7.98 -51.93 -0.41 0.39 16
48 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16
49 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16
50 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16
51 H 0.11 2.06 6.53 -51.93 -0.34 1.72 16
LS Contribution 406.69 15.07 6.13 6.13
Total: -1.00 -34.34 406.69 -10.41 -44.76
By element:
Atomic # 1 Polarization: 18.34 SS G_CDS: -8.84 Total: 9.51 kcal
Atomic # 6 Polarization: 8.58 SS G_CDS: -0.89 Total: 7.69 kcal
Atomic # 7 Polarization: -58.59 SS G_CDS: -1.96 Total: -60.55 kcal
Atomic # 8 Polarization: -23.89 SS G_CDS: 0.17 Total: -23.72 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -34.34 -10.41 -44.76 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567395644.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.653 kcal
(2) G-P(sol) polarization free energy of solvation -34.344 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds