Wall clock time and date at job start Tue Mar 31 2020 22:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47842 * 110.99990 * 2 1 4 4 C 1.54906 * 104.79765 * 146.36623 * 3 2 1 5 5 C 1.55143 * 101.64910 * 322.92546 * 4 3 2 6 6 C 1.47444 * 110.99972 * 120.84067 * 2 1 3 7 7 H 1.09002 * 109.89139 * 117.17208 * 6 2 1 8 8 C 1.50706 * 109.88830 * 356.14838 * 6 2 1 9 9 O 1.21275 * 119.99719 * 307.62270 * 8 6 2 10 10 N 1.34774 * 119.99779 * 127.34781 * 8 6 2 11 11 C 1.46497 * 119.99901 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.47293 * 179.97438 * 11 10 8 13 13 H 1.09001 * 110.28142 * 304.32572 * 12 11 10 14 14 C 1.54253 * 110.32387 * 66.45565 * 12 11 10 15 15 C 1.54378 * 105.06158 * 118.89519 * 14 12 11 16 16 N 1.48565 * 104.59373 * 23.85484 * 15 14 12 17 17 C 1.46900 * 110.99816 * 200.96127 * 16 15 14 18 18 C 1.50700 * 109.46909 * 290.12243 * 17 16 15 19 19 O 1.21296 * 120.00118 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00073 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00029 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00119 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99993 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99804 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00108 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46883 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47220 * 119.99951 * 25 23 21 28 28 H 1.48493 * 109.47118 * 239.99447 * 25 23 21 29 29 C 1.48567 * 104.21904 * 320.51403 * 16 15 14 30 30 H 1.09001 * 109.47233 * 308.70768 * 1 2 3 31 31 H 1.09003 * 109.47048 * 68.71162 * 1 2 3 32 32 H 1.09009 * 109.47092 * 188.70832 * 1 2 3 33 33 H 1.09004 * 110.37290 * 265.19055 * 3 2 1 34 34 H 1.08998 * 110.37275 * 27.53126 * 3 2 1 35 35 H 1.09000 * 110.99135 * 81.01613 * 4 3 2 36 36 H 1.08995 * 110.98977 * 204.80010 * 4 3 2 37 37 H 1.08994 * 110.70791 * 277.27377 * 5 4 3 38 38 H 1.08998 * 110.70336 * 154.03811 * 5 4 3 39 39 H 0.97004 * 120.00120 * 0.02562 * 10 8 6 40 40 H 1.08998 * 109.47566 * 300.00341 * 11 10 8 41 41 H 1.09000 * 109.47310 * 60.00281 * 11 10 8 42 42 H 1.08997 * 110.32476 * 237.79435 * 14 12 11 43 43 H 1.09005 * 110.32156 * 359.89941 * 14 12 11 44 44 H 1.09002 * 110.40942 * 142.63049 * 15 14 12 45 45 H 1.09006 * 110.41356 * 265.07416 * 15 14 12 46 46 H 1.09002 * 109.47135 * 50.12035 * 17 16 15 47 47 H 1.08998 * 109.46906 * 170.12514 * 17 16 15 48 48 H 0.96995 * 120.00182 * 0.02562 * 20 18 17 49 49 H 0.97001 * 119.99997 * 180.02562 * 24 23 21 50 50 H 1.08998 * 110.41222 * 280.70631 * 29 16 15 51 51 H 1.08996 * 110.40635 * 158.26464 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3048 1.3027 0.8295 5 6 2.9158 0.2822 1.9315 6 6 1.9974 -0.7057 1.1819 7 1 2.5673 -1.5801 0.8677 8 6 0.8611 -1.1291 2.0767 9 8 0.0368 -0.3154 2.4362 10 7 0.7578 -2.4131 2.4728 11 6 -0.3465 -2.8246 3.3431 12 6 -0.2312 -4.3211 3.6404 13 1 -0.1978 -4.8895 2.7110 14 6 1.0270 -4.6038 4.4869 15 6 0.4971 -5.2166 5.8010 16 7 -0.8263 -5.7876 5.4408 17 6 -1.6671 -5.9606 6.6329 18 6 -1.1091 -7.0718 7.4842 19 8 -0.1090 -7.6614 7.1327 20 7 -1.7212 -7.4106 8.6362 21 6 -1.2132 -8.4212 9.4109 22 1 -0.3229 -8.9461 9.0980 23 6 -1.8446 -8.7708 10.5983 24 7 -2.9284 -8.1323 10.9788 25 14 -1.1529 -10.1482 11.6535 26 1 0.0639 -10.7029 11.0080 27 1 -0.8034 -9.6161 12.9952 28 1 -2.1699 -11.2209 11.7961 29 6 -1.4156 -4.7869 4.5142 30 1 -0.3634 0.6426 0.8019 31 1 -0.3633 0.3731 -0.9576 32 1 -0.3634 -1.0159 0.1556 33 1 2.2148 1.7038 -1.0183 34 1 1.2889 2.0592 0.4723 35 1 4.1302 0.9281 0.2242 36 1 3.5499 2.2721 1.2633 37 1 2.3744 0.7747 2.7391 38 1 3.8000 -0.2278 2.3137 39 1 1.4151 -3.0647 2.1823 40 1 -0.3018 -2.2638 4.2767 41 1 -1.2953 -2.6257 2.8449 42 1 1.6772 -5.3124 3.9738 43 1 1.5634 -3.6766 4.6890 44 1 1.1671 -6.0016 6.1516 45 1 0.3836 -4.4445 6.5620 46 1 -1.6787 -5.0340 7.2068 47 1 -2.6829 -6.2118 6.3276 48 1 -2.5211 -6.9394 8.9171 49 1 -3.3690 -8.3761 11.8079 50 1 -1.8284 -3.9475 5.0738 51 1 -2.1856 -5.2484 3.8962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567395645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:15 Heat of formation + Delta-G solvation = -52.966489 kcal Electronic energy + Delta-G solvation = -29284.319231 eV Core-core repulsion = 25218.664402 eV Total energy + Delta-G solvation = -4065.654828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06914 -39.40639 -38.16016 -37.52821 -35.21484 -33.89239 -32.52681 -32.17610 -31.19536 -30.14696 -29.14373 -27.20683 -26.00170 -25.19136 -24.01913 -22.48186 -21.72063 -21.28700 -20.52186 -19.94665 -19.07778 -17.87346 -17.68995 -16.90148 -16.25431 -16.03133 -15.86741 -15.47102 -15.34022 -15.05458 -14.57264 -14.48272 -14.32367 -13.93099 -13.77376 -13.72721 -13.33133 -13.19496 -12.76745 -12.63600 -12.37085 -12.28131 -11.97833 -11.88812 -11.86932 -11.71000 -11.57581 -11.48854 -11.35831 -11.25088 -11.15686 -10.95833 -10.85808 -10.53824 -10.34369 -10.31505 -10.22218 -9.50097 -9.40931 -8.66860 -8.51385 -8.03558 -7.94299 -6.41482 -3.82260 2.18019 2.79246 3.16216 3.26712 3.33862 3.59520 3.90741 4.00799 4.04346 4.19500 4.23213 4.34987 4.55487 4.62878 4.66346 4.72548 4.83596 4.97272 5.07090 5.08352 5.20251 5.22889 5.24954 5.30375 5.32247 5.37286 5.40428 5.43028 5.47007 5.58267 5.61517 5.69353 5.71900 5.74047 5.77936 5.80622 5.89279 6.06104 6.11074 6.20123 6.27831 6.38910 6.42768 6.50283 7.08924 7.14335 7.20286 7.55562 7.84935 8.06733 8.62219 9.18596 9.54985 10.06833 10.76419 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034394 B = 0.001662 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.899388 B =16842.455301 C =17087.916296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.510 5.510 3 C 0.037 3.963 4 C -0.127 4.127 5 C -0.129 4.129 6 C 0.052 3.948 7 H 0.102 0.898 8 C 0.502 3.498 9 O -0.539 6.539 10 N -0.722 5.722 11 C 0.126 3.874 12 C -0.103 4.103 13 H 0.087 0.913 14 C -0.121 4.121 15 C 0.037 3.963 16 N -0.484 5.484 17 C 0.034 3.966 18 C 0.445 3.555 19 O -0.578 6.578 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.038 3.962 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.403 0.597 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.036 0.964 46 H 0.050 0.950 47 H 0.089 0.911 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.045 0.955 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 18.352 -20.567 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.234 5.234 3 C -0.090 4.090 4 C -0.165 4.165 5 C -0.168 4.168 6 C -0.059 4.059 7 H 0.120 0.880 8 C 0.287 3.713 9 O -0.416 6.416 10 N -0.374 5.374 11 C 0.003 3.997 12 C -0.123 4.123 13 H 0.105 0.895 14 C -0.159 4.159 15 C -0.091 4.091 16 N -0.208 5.208 17 C -0.098 4.098 18 C 0.231 3.769 19 O -0.462 6.462 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.091 4.091 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.238 0.762 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.118 0.882 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.108 0.892 48 H 0.225 0.775 49 H 0.080 0.920 50 H 0.063 0.937 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.309 17.698 -21.050 28.729 hybrid contribution -0.529 0.382 1.836 1.948 sum 7.781 18.079 -19.214 27.506 Atomic orbital electron populations 1.22947 0.86884 1.02439 1.02060 1.64060 1.09176 1.14870 1.35333 1.23167 0.95754 0.89289 1.00801 1.22701 0.97730 0.99435 0.96610 1.22751 0.99119 0.96493 0.98429 1.22642 0.94187 0.99393 0.89681 0.87970 1.21049 0.87025 0.82250 0.80947 1.90683 1.42936 1.51632 1.56342 1.46138 1.30037 1.10100 1.51120 1.21477 0.89630 0.94396 0.94241 1.22126 0.96343 0.93900 0.99883 0.89479 1.22432 0.96692 1.00524 0.96295 1.23155 0.92363 0.98227 0.95313 1.65155 1.02346 1.40374 1.12877 1.22062 0.97871 0.98219 0.91620 1.19692 0.86926 0.87125 0.83192 1.90500 1.27013 1.56199 1.72470 1.41868 1.26676 1.32924 1.18783 1.19746 1.10867 1.10997 1.01121 0.87872 1.25261 0.96017 0.98989 0.97748 1.69624 1.18945 1.41717 1.24087 0.85801 0.78935 0.80289 0.79322 1.19235 1.20801 1.20755 1.23099 0.96373 0.94317 0.95322 0.91705 0.91716 0.91944 0.89720 0.92932 0.90260 0.90324 0.90398 0.89871 0.76227 0.91327 0.91313 0.90789 0.91460 0.88216 0.94524 0.93237 0.89250 0.77517 0.91951 0.93690 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 8.19 60.07 0.49 0.53 16 2 N -0.51 -4.31 5.44 -232.94 -1.27 -5.57 16 3 C 0.04 0.26 6.73 -2.30 -0.02 0.25 16 4 C -0.13 -0.71 7.08 -24.59 -0.17 -0.89 16 5 C -0.13 -0.87 6.45 -24.91 -0.16 -1.03 16 6 C 0.05 0.40 3.84 -67.87 -0.26 0.14 16 7 H 0.10 0.62 7.95 -51.93 -0.41 0.21 16 8 C 0.50 4.85 4.93 -10.98 -0.05 4.80 16 9 O -0.54 -7.05 13.77 5.56 0.08 -6.97 16 10 N -0.72 -5.85 5.32 -60.29 -0.32 -6.17 16 11 C 0.13 1.18 4.76 -4.04 -0.02 1.16 16 12 C -0.10 -1.01 3.13 -89.24 -0.28 -1.29 16 13 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.12 -1.33 6.33 -25.35 -0.16 -1.49 16 15 C 0.04 0.57 5.80 -2.18 -0.01 0.56 16 16 N -0.48 -7.89 5.06 -231.40 -1.17 -9.06 16 17 C 0.03 0.61 5.30 -4.98 -0.03 0.58 16 18 C 0.45 10.53 7.59 -10.99 -0.08 10.45 16 19 O -0.58 -15.55 14.42 5.54 0.08 -15.47 16 20 N -0.57 -14.38 5.29 -10.96 -0.06 -14.44 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 25 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 C 0.04 0.45 6.03 -2.18 -0.01 0.44 16 30 H 0.06 0.72 5.80 -51.93 -0.30 0.42 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.61 6.96 -51.92 -0.36 0.25 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.40 7.63 -51.93 -0.40 0.01 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.65 7.70 -51.93 -0.40 0.25 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.40 2.40 8.18 -40.82 -0.33 2.06 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.66 7.63 -51.93 -0.40 0.26 16 44 H 0.10 1.84 6.91 -51.93 -0.36 1.49 16 45 H 0.04 0.56 7.82 -51.93 -0.41 0.15 16 46 H 0.05 0.81 7.88 -51.93 -0.41 0.41 16 47 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 48 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 49 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 50 H 0.04 0.52 7.72 -51.93 -0.40 0.12 16 51 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -33.08 399.64 -10.61 -43.68 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.66 Total: 9.59 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -1.01 Total: 6.23 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -2.09 Total: -59.14 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.16 Total: -22.44 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.08 -10.61 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567395645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.284 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds