Wall clock time and date at job start Tue Mar 31 2020 22:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47842 * 110.99990 * 2 1 4 4 C 1.54906 * 104.79765 * 146.36623 * 3 2 1 5 5 C 1.55143 * 101.64910 * 322.92546 * 4 3 2 6 6 C 1.47444 * 110.99972 * 120.84067 * 2 1 3 7 7 H 1.09002 * 109.89139 * 117.17208 * 6 2 1 8 8 C 1.50706 * 109.88830 * 356.14838 * 6 2 1 9 9 O 1.21275 * 119.99719 * 307.62270 * 8 6 2 10 10 N 1.34774 * 119.99779 * 127.34781 * 8 6 2 11 11 C 1.46497 * 119.99901 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.47293 * 179.97438 * 11 10 8 13 13 H 1.09001 * 110.28142 * 304.32572 * 12 11 10 14 14 C 1.54253 * 110.32387 * 66.45565 * 12 11 10 15 15 C 1.54378 * 105.06158 * 118.89519 * 14 12 11 16 16 N 1.48565 * 104.59373 * 23.85484 * 15 14 12 17 17 C 1.46900 * 110.99816 * 200.96127 * 16 15 14 18 18 C 1.50700 * 109.46909 * 290.12243 * 17 16 15 19 19 O 1.21296 * 120.00118 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00073 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00029 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00119 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99993 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99804 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00108 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46883 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47220 * 119.99951 * 25 23 21 28 28 H 1.48493 * 109.47118 * 239.99447 * 25 23 21 29 29 C 1.48567 * 104.21904 * 320.51403 * 16 15 14 30 30 H 1.09001 * 109.47233 * 308.70768 * 1 2 3 31 31 H 1.09003 * 109.47048 * 68.71162 * 1 2 3 32 32 H 1.09009 * 109.47092 * 188.70832 * 1 2 3 33 33 H 1.09004 * 110.37290 * 265.19055 * 3 2 1 34 34 H 1.08998 * 110.37275 * 27.53126 * 3 2 1 35 35 H 1.09000 * 110.99135 * 81.01613 * 4 3 2 36 36 H 1.08995 * 110.98977 * 204.80010 * 4 3 2 37 37 H 1.08994 * 110.70791 * 277.27377 * 5 4 3 38 38 H 1.08998 * 110.70336 * 154.03811 * 5 4 3 39 39 H 0.97004 * 120.00120 * 0.02562 * 10 8 6 40 40 H 1.08998 * 109.47566 * 300.00341 * 11 10 8 41 41 H 1.09000 * 109.47310 * 60.00281 * 11 10 8 42 42 H 1.08997 * 110.32476 * 237.79435 * 14 12 11 43 43 H 1.09005 * 110.32156 * 359.89941 * 14 12 11 44 44 H 1.09002 * 110.40942 * 142.63049 * 15 14 12 45 45 H 1.09006 * 110.41356 * 265.07416 * 15 14 12 46 46 H 1.09002 * 109.47135 * 50.12035 * 17 16 15 47 47 H 1.08998 * 109.46906 * 170.12514 * 17 16 15 48 48 H 0.96995 * 120.00182 * 0.02562 * 20 18 17 49 49 H 0.97001 * 119.99997 * 180.02562 * 24 23 21 50 50 H 1.08998 * 110.41222 * 280.70631 * 29 16 15 51 51 H 1.08996 * 110.40635 * 158.26464 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3048 1.3027 0.8295 5 6 2.9158 0.2822 1.9315 6 6 1.9974 -0.7057 1.1819 7 1 2.5673 -1.5801 0.8677 8 6 0.8611 -1.1291 2.0767 9 8 0.0368 -0.3154 2.4362 10 7 0.7578 -2.4131 2.4728 11 6 -0.3465 -2.8246 3.3431 12 6 -0.2312 -4.3211 3.6404 13 1 -0.1978 -4.8895 2.7110 14 6 1.0270 -4.6038 4.4869 15 6 0.4971 -5.2166 5.8010 16 7 -0.8263 -5.7876 5.4408 17 6 -1.6671 -5.9606 6.6329 18 6 -1.1091 -7.0718 7.4842 19 8 -0.1090 -7.6614 7.1327 20 7 -1.7212 -7.4106 8.6362 21 6 -1.2132 -8.4212 9.4109 22 1 -0.3229 -8.9461 9.0980 23 6 -1.8446 -8.7708 10.5983 24 7 -2.9284 -8.1323 10.9788 25 14 -1.1529 -10.1482 11.6535 26 1 0.0639 -10.7029 11.0080 27 1 -0.8034 -9.6161 12.9952 28 1 -2.1699 -11.2209 11.7961 29 6 -1.4156 -4.7869 4.5142 30 1 -0.3634 0.6426 0.8019 31 1 -0.3633 0.3731 -0.9576 32 1 -0.3634 -1.0159 0.1556 33 1 2.2148 1.7038 -1.0183 34 1 1.2889 2.0592 0.4723 35 1 4.1302 0.9281 0.2242 36 1 3.5499 2.2721 1.2633 37 1 2.3744 0.7747 2.7391 38 1 3.8000 -0.2278 2.3137 39 1 1.4151 -3.0647 2.1823 40 1 -0.3018 -2.2638 4.2767 41 1 -1.2953 -2.6257 2.8449 42 1 1.6772 -5.3124 3.9738 43 1 1.5634 -3.6766 4.6890 44 1 1.1671 -6.0016 6.1516 45 1 0.3836 -4.4445 6.5620 46 1 -1.6787 -5.0340 7.2068 47 1 -2.6829 -6.2118 6.3276 48 1 -2.5211 -6.9394 8.9171 49 1 -3.3690 -8.3761 11.8079 50 1 -1.8284 -3.9475 5.0738 51 1 -2.1856 -5.2484 3.8962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567395645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:14 Heat of formation + Delta-G solvation = -80.021835 kcal Electronic energy + Delta-G solvation = -29285.492438 eV Core-core repulsion = 25218.664402 eV Total energy + Delta-G solvation = -4066.828036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.77394 -40.68740 -39.48015 -38.55461 -36.24489 -35.80403 -33.47082 -33.14073 -32.98043 -30.94515 -30.02770 -28.61219 -26.76893 -26.48170 -25.43029 -23.21713 -22.43797 -22.22481 -21.47392 -20.96774 -20.59230 -19.85091 -18.40838 -17.78966 -17.60900 -16.99072 -16.72793 -16.65953 -16.37393 -16.16317 -15.95739 -15.84973 -15.50473 -15.19305 -14.82922 -14.62925 -14.52547 -14.17227 -13.82014 -13.66164 -13.53709 -13.32728 -13.13084 -13.03297 -12.95649 -12.88531 -12.50620 -12.44702 -12.40738 -12.29804 -12.13466 -12.11945 -12.05711 -11.86581 -11.75279 -11.51721 -11.45161 -11.05680 -10.32901 -10.16050 -10.01585 -9.39127 -9.33587 -8.47404 -5.96165 1.35868 1.40967 1.45677 1.55300 2.04491 2.08464 2.28362 2.83372 2.98955 3.19117 3.34971 3.46458 3.62300 3.70046 3.71700 3.81059 3.88470 4.15309 4.23933 4.26661 4.29978 4.37298 4.38003 4.38869 4.49878 4.51598 4.52179 4.59750 4.66365 4.68447 4.77615 4.80322 4.87600 4.89682 4.96988 5.00410 5.06423 5.14192 5.18969 5.24503 5.26271 5.40338 5.42721 5.78881 5.84093 5.86181 5.92947 6.07939 6.48232 6.59819 7.12316 7.16266 7.55552 8.11390 8.70341 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034394 B = 0.001662 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.899388 B =16842.455301 C =17087.916296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.514 5.514 3 C 0.032 3.968 4 C -0.120 4.120 5 C -0.129 4.129 6 C 0.051 3.949 7 H 0.125 0.875 8 C 0.500 3.500 9 O -0.577 6.577 10 N -0.711 5.711 11 C 0.136 3.864 12 C -0.087 4.087 13 H 0.103 0.897 14 C -0.109 4.109 15 C 0.034 3.966 16 N -0.506 5.506 17 C 0.046 3.954 18 C 0.442 3.558 19 O -0.615 6.615 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.271 1.271 29 C 0.037 3.963 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.416 0.584 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.033 0.967 46 H 0.066 0.934 47 H 0.110 0.890 48 H 0.395 0.605 49 H 0.277 0.723 50 H 0.053 0.947 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 18.816 -21.812 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.238 5.238 3 C -0.095 4.095 4 C -0.158 4.158 5 C -0.168 4.168 6 C -0.060 4.060 7 H 0.143 0.857 8 C 0.287 3.713 9 O -0.457 6.457 10 N -0.364 5.364 11 C 0.011 3.989 12 C -0.106 4.106 13 H 0.121 0.879 14 C -0.147 4.147 15 C -0.094 4.094 16 N -0.230 5.230 17 C -0.086 4.086 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.091 4.091 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.253 0.747 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.051 0.949 46 H 0.084 0.916 47 H 0.128 0.872 48 H 0.229 0.771 49 H 0.087 0.913 50 H 0.071 0.929 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.019 18.164 -22.312 30.151 hybrid contribution -0.751 0.258 2.192 2.331 sum 8.268 18.422 -20.120 28.505 Atomic orbital electron populations 1.22811 0.87680 1.01430 1.01662 1.64146 1.08420 1.15717 1.35561 1.23262 0.96157 0.88379 1.01719 1.22712 0.97279 0.99716 0.96081 1.22769 0.99318 0.96610 0.98084 1.22810 0.93609 1.00362 0.89217 0.85690 1.21442 0.87022 0.82156 0.80702 1.90678 1.44455 1.52735 1.57830 1.46033 1.29882 1.10036 1.50414 1.21287 0.90030 0.93678 0.93860 1.22003 0.94604 0.94240 0.99800 0.87883 1.22358 0.97274 1.01017 0.94080 1.23089 0.91761 0.96955 0.97625 1.65098 1.02721 1.42670 1.12530 1.21920 0.98577 0.96346 0.91724 1.20734 0.86010 0.87539 0.82786 1.90473 1.28616 1.57757 1.73220 1.41945 1.27048 1.32902 1.19440 1.19698 1.11127 1.12620 1.02696 0.90306 1.26050 0.96117 1.00952 0.98253 1.69684 1.19436 1.42547 1.24596 0.84858 0.78166 0.77543 0.77684 1.19772 1.19620 1.19598 1.23202 0.97378 0.93700 0.94843 0.93958 0.90798 0.92689 0.88508 0.94263 0.88809 0.89423 0.92568 0.87925 0.74668 0.92631 0.91464 0.90007 0.89930 0.92167 0.94882 0.91569 0.87221 0.77097 0.91337 0.92855 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 8.19 127.69 1.05 1.27 16 2 N -0.51 -7.94 5.44 -890.89 -4.85 -12.79 16 3 C 0.03 0.41 6.73 86.77 0.58 0.99 16 4 C -0.12 -1.10 7.08 31.98 0.23 -0.87 16 5 C -0.13 -1.51 6.45 31.78 0.20 -1.30 16 6 C 0.05 0.69 3.84 44.51 0.17 0.86 16 7 H 0.13 1.11 7.95 -2.39 -0.02 1.10 16 8 C 0.50 9.07 4.93 87.66 0.43 9.51 16 9 O -0.58 -15.07 13.77 -3.01 -0.04 -15.11 16 10 N -0.71 -10.03 5.32 -463.06 -2.46 -12.49 16 11 C 0.14 2.26 4.76 86.38 0.41 2.68 16 12 C -0.09 -1.50 3.13 -9.90 -0.03 -1.53 16 13 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 14 C -0.11 -2.20 6.33 31.49 0.20 -2.00 16 15 C 0.03 1.03 5.80 86.45 0.50 1.54 16 16 N -0.51 -16.10 5.06 -886.01 -4.49 -20.58 16 17 C 0.05 1.62 5.30 85.56 0.45 2.07 16 18 C 0.44 21.36 7.59 87.66 0.66 22.03 16 19 O -0.61 -34.26 14.42 -3.08 -0.04 -34.30 16 20 N -0.58 -29.99 5.29 -306.98 -1.62 -31.61 16 21 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 24 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 29 C 0.04 0.81 6.03 86.45 0.52 1.33 16 30 H 0.04 0.97 5.80 -2.39 -0.01 0.95 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.05 6.96 -2.38 -0.02 1.03 16 33 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.04 0.60 7.63 -2.39 -0.02 0.58 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.91 7.70 -2.39 -0.02 0.89 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.42 3.71 8.18 -92.71 -0.76 2.95 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.43 7.63 -2.38 -0.02 1.41 16 44 H 0.06 2.32 6.91 -2.39 -0.02 2.30 16 45 H 0.03 1.01 7.82 -2.38 -0.02 0.99 16 46 H 0.07 2.12 7.88 -2.39 -0.02 2.10 16 47 H 0.11 3.41 8.13 -2.39 -0.02 3.39 16 48 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 49 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 50 H 0.05 1.11 7.72 -2.39 -0.02 1.09 16 51 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -73.77 399.64 -5.08 -78.86 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -0.55 Total: 34.60 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.66 Total: 18.04 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -13.14 Total: -127.35 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.09 Total: -49.41 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -73.77 -5.08 -78.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567395645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.166 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds