Wall clock time and date at job start Tue Mar 31 2020 22:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48678 * 111.10622 * 2 1 4 4 C 1.54379 * 104.66807 * 201.09909 * 3 2 1 5 5 C 1.54259 * 105.06276 * 23.77250 * 4 3 2 6 6 C 1.48554 * 110.99985 * 244.58498 * 2 1 3 7 7 H 1.08999 * 110.41193 * 40.14035 * 6 2 1 8 8 C 1.50703 * 110.41275 * 277.81867 * 6 2 1 9 9 O 1.21283 * 119.99488 * 343.04846 * 8 6 2 10 10 N 1.34777 * 120.00290 * 163.05286 * 8 6 2 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 6 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 H 1.09000 * 110.64730 * 54.29702 * 12 11 10 14 14 C 1.54600 * 110.72329 * 291.14731 * 12 11 10 15 15 C 1.53993 * 105.13868 * 219.68513 * 14 12 11 16 16 N 1.47898 * 107.06148 * 358.77239 * 15 14 12 17 17 C 1.46901 * 111.00517 * 145.84348 * 16 15 14 18 18 C 1.50705 * 109.46957 * 69.87307 * 17 16 15 19 19 O 1.21288 * 120.00040 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99902 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99947 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00245 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00332 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00491 * 180.02562 * 23 21 20 25 25 Si 1.86808 * 119.99710 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47023 * 89.99922 * 25 23 21 27 27 H 1.48499 * 109.47011 * 209.99754 * 25 23 21 28 28 H 1.48495 * 109.47122 * 329.99886 * 25 23 21 29 29 C 1.48733 * 105.94247 * 25.20566 * 16 15 14 30 30 H 1.08999 * 109.47108 * 175.41755 * 1 2 3 31 31 H 1.09003 * 109.47003 * 295.42062 * 1 2 3 32 32 H 1.08994 * 109.47024 * 55.41711 * 1 2 3 33 33 H 1.08993 * 110.43996 * 82.26180 * 3 2 1 34 34 H 1.08994 * 110.40831 * 319.91734 * 3 2 1 35 35 H 1.09001 * 110.32623 * 264.87556 * 4 3 2 36 36 H 1.09004 * 110.40861 * 142.71276 * 4 3 2 37 37 H 1.08998 * 110.32348 * 241.10181 * 5 4 3 38 38 H 1.09005 * 110.40619 * 118.94202 * 5 4 3 39 39 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 40 40 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 41 41 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 42 42 H 1.09000 * 110.31070 * 338.59423 * 14 12 11 43 43 H 1.08993 * 110.31420 * 100.66938 * 14 12 11 44 44 H 1.09006 * 109.91802 * 118.12581 * 15 14 12 45 45 H 1.09003 * 109.91777 * 239.22250 * 15 14 12 46 46 H 1.09000 * 109.47747 * 189.87687 * 17 16 15 47 47 H 1.08995 * 109.47110 * 309.87908 * 17 16 15 48 48 H 0.97003 * 120.00391 * 0.02562 * 20 18 17 49 49 H 0.96994 * 120.00254 * 180.02562 * 24 23 21 50 50 H 1.09007 * 110.84113 * 202.58201 * 29 16 15 51 51 H 1.08991 * 110.58888 * 79.38534 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0044 1.3870 0.0000 4 6 3.4451 1.2500 -0.5376 5 6 3.4431 -0.0540 -1.3617 6 6 2.0014 -0.5952 -1.2527 7 1 1.4086 -0.2728 -2.1086 8 6 2.0104 -2.0992 -1.1575 9 8 1.9153 -2.6389 -0.0756 10 7 2.1242 -2.8445 -2.2747 11 6 2.1268 -4.3066 -2.1827 12 6 2.2599 -4.9055 -3.5843 13 1 3.1353 -4.5020 -4.0931 14 6 0.9796 -4.6498 -4.4123 15 6 0.7449 -5.9508 -5.2020 16 7 1.8499 -6.8720 -4.8590 17 6 1.3871 -8.2661 -4.8414 18 6 1.0823 -8.7119 -6.2483 19 8 1.2359 -7.9441 -7.1746 20 7 0.6399 -9.9642 -6.4774 21 6 0.3621 -10.3696 -7.7573 22 1 0.4981 -9.6857 -8.5819 23 6 -0.0945 -11.6605 -7.9935 24 7 -0.3604 -12.0493 -9.2203 25 14 -0.3305 -12.8434 -6.5670 26 1 -1.7139 -12.7164 -6.0424 27 1 -0.1043 -14.2345 -7.0350 28 1 0.6391 -12.5196 -5.4899 29 6 2.3300 -6.4518 -3.5154 30 1 -0.3633 -1.0244 -0.0821 31 1 -0.3633 0.4411 0.9282 32 1 -0.3633 0.5833 -0.8460 33 1 2.0132 1.7917 1.0120 34 1 1.4121 2.0231 -0.6578 35 1 4.1520 1.1746 0.2886 36 1 3.6959 2.0992 -1.1733 37 1 4.1490 -0.7695 -0.9399 38 1 3.6919 0.1537 -2.4025 39 1 2.1999 -2.4128 -3.1401 40 1 2.9666 -4.6304 -1.5680 41 1 1.1942 -4.6439 -1.7306 42 1 0.1355 -4.4505 -3.7521 43 1 1.1311 -3.8135 -5.0947 44 1 -0.2094 -6.3925 -4.9147 45 1 0.7501 -5.7420 -6.2718 46 1 2.1652 -8.9021 -4.4193 47 1 0.4860 -8.3421 -4.2330 48 1 0.5173 -10.5785 -5.7368 49 1 -0.6795 -12.9503 -9.3851 50 1 3.3549 -6.7833 -3.3486 51 1 1.6698 -6.8325 -2.7362 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567395647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:23 Heat of formation + Delta-G solvation = -81.081255 kcal Electronic energy + Delta-G solvation = -29067.977157 eV Core-core repulsion = 25001.103181 eV Total energy + Delta-G solvation = -4066.873976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.28269 -40.69222 -39.51445 -38.75608 -36.20590 -35.79853 -33.78847 -33.35622 -32.98989 -30.94450 -29.99507 -28.70850 -26.75043 -26.41702 -25.26887 -23.18609 -22.32006 -21.89861 -21.57796 -21.14387 -20.81727 -20.07385 -18.36884 -17.70889 -17.59723 -16.99722 -16.82393 -16.72888 -16.35268 -16.00424 -15.76214 -15.51941 -15.22224 -15.10919 -14.81751 -14.73272 -14.49131 -14.40246 -14.21597 -14.08802 -13.53351 -13.34095 -13.25103 -13.04443 -12.97479 -12.90876 -12.59035 -12.42860 -12.39925 -12.34381 -12.07839 -12.05304 -11.98315 -11.88959 -11.55249 -11.53413 -11.47163 -10.77608 -10.41261 -10.24331 -10.07112 -9.47552 -9.30567 -8.41438 -6.02083 1.29825 1.34703 1.43810 1.63651 1.96338 2.05156 2.22481 2.66554 3.09172 3.14584 3.22262 3.54934 3.61728 3.66782 3.72873 3.85648 3.97984 4.08387 4.16550 4.23725 4.26142 4.36202 4.38250 4.40372 4.45044 4.45832 4.53357 4.57054 4.69863 4.72837 4.73207 4.80808 4.88479 4.92949 4.94729 5.02096 5.11716 5.12337 5.18647 5.24066 5.29320 5.46406 5.52630 5.75538 5.88867 5.95753 5.96594 6.04925 6.59718 6.60191 6.88587 7.30142 7.40047 7.97528 8.76217 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.001670 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.619666 B =16763.441423 C =16937.584907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.522 5.522 3 C 0.031 3.969 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.043 3.957 7 H 0.095 0.905 8 C 0.518 3.482 9 O -0.568 6.568 10 N -0.717 5.717 11 C 0.139 3.861 12 C -0.087 4.087 13 H 0.099 0.901 14 C -0.115 4.115 15 C 0.042 3.958 16 N -0.518 5.518 17 C 0.045 3.955 18 C 0.451 3.549 19 O -0.606 6.606 20 N -0.594 5.594 21 C -0.327 4.327 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.258 1.258 27 H -0.275 1.275 28 H -0.232 1.232 29 C 0.042 3.958 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.414 0.586 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.032 0.968 45 H 0.053 0.947 46 H 0.120 0.880 47 H 0.078 0.922 48 H 0.389 0.611 49 H 0.279 0.721 50 H 0.098 0.902 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.495 25.692 21.924 34.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.247 5.247 3 C -0.096 4.096 4 C -0.159 4.159 5 C -0.149 4.149 6 C -0.069 4.069 7 H 0.112 0.888 8 C 0.304 3.696 9 O -0.446 6.446 10 N -0.370 5.370 11 C 0.015 3.985 12 C -0.107 4.107 13 H 0.118 0.882 14 C -0.153 4.153 15 C -0.086 4.086 16 N -0.242 5.242 17 C -0.086 4.086 18 C 0.239 3.761 19 O -0.490 6.490 20 N -0.236 5.236 21 C -0.457 4.457 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.182 1.182 27 H -0.200 1.200 28 H -0.155 1.155 29 C -0.085 4.085 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.251 0.749 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.138 0.862 47 H 0.096 0.904 48 H 0.224 0.776 49 H 0.088 0.912 50 H 0.116 0.884 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.025 25.380 22.020 34.137 hybrid contribution -1.464 -0.820 -0.578 1.775 sum 4.561 24.559 21.442 32.920 Atomic orbital electron populations 1.22487 0.87096 1.01420 1.02112 1.65049 1.09092 1.16553 1.33965 1.23242 0.95749 0.88404 1.02213 1.22310 0.96124 0.97475 0.99952 1.22279 0.92591 0.97442 1.02567 1.22716 0.99524 0.90634 0.94040 0.88785 1.20780 0.75279 0.89861 0.83636 1.90694 1.49972 1.74513 1.29396 1.45903 1.74523 1.06833 1.09779 1.21192 1.01855 0.79422 0.96018 1.22171 0.99249 0.94900 0.94343 0.88237 1.22469 0.97791 0.96663 0.98426 1.22766 0.91994 0.93477 1.00365 1.64366 1.32600 1.00642 1.26612 1.22023 1.02016 0.92244 0.92334 1.20890 0.81121 0.81946 0.92141 1.90528 1.56817 1.54414 1.47245 1.42042 1.61263 1.12669 1.07597 1.18994 1.43416 0.98489 0.84769 0.92690 1.26095 0.96073 0.98747 1.00411 1.69799 1.45367 1.20269 1.22098 0.85378 0.80261 0.77679 0.78293 1.18248 1.19973 1.15497 1.23336 1.01943 0.94371 0.88872 0.93080 0.90391 0.93672 0.89630 0.92123 0.91152 0.88660 0.92029 0.87787 0.74943 0.91424 0.92315 0.90494 0.89652 0.94937 0.92808 0.86218 0.90429 0.77582 0.91171 0.88403 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.45 127.69 1.21 1.45 16 2 N -0.52 -8.33 4.93 -886.74 -4.37 -12.71 16 3 C 0.03 0.31 6.50 86.43 0.56 0.87 16 4 C -0.12 -0.96 7.00 31.49 0.22 -0.73 16 5 C -0.11 -1.05 6.54 31.49 0.21 -0.84 16 6 C 0.04 0.56 2.68 44.32 0.12 0.68 16 7 H 0.09 0.82 7.97 -2.39 -0.02 0.80 16 8 C 0.52 9.73 6.71 87.66 0.59 10.32 16 9 O -0.57 -16.25 16.58 -3.04 -0.05 -16.31 16 10 N -0.72 -9.77 5.43 -463.07 -2.51 -12.28 16 11 C 0.14 2.17 5.01 86.38 0.43 2.60 16 12 C -0.09 -1.39 3.09 -9.59 -0.03 -1.42 16 13 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 14 C -0.12 -2.14 6.31 31.47 0.20 -1.94 16 15 C 0.04 1.22 5.76 86.45 0.50 1.72 16 16 N -0.52 -15.24 4.95 -887.00 -4.39 -19.64 16 17 C 0.05 1.41 5.25 85.56 0.45 1.86 16 18 C 0.45 20.63 7.58 87.66 0.66 21.29 16 19 O -0.61 -33.80 14.66 -3.05 -0.04 -33.84 16 20 N -0.59 -28.31 5.09 -306.99 -1.56 -29.87 16 21 C -0.33 -19.34 10.16 84.04 0.85 -18.49 16 22 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 24 N -0.93 -56.64 13.96 21.66 0.30 -56.33 16 25 Si 0.96 39.06 27.74 68.60 1.90 40.96 16 26 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 29 C 0.04 0.83 6.01 86.61 0.52 1.35 16 30 H 0.05 0.91 7.96 -2.39 -0.02 0.89 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 0.46 7.98 -2.39 -0.02 0.44 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.43 7.91 -2.39 -0.02 0.42 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 0.80 7.85 -2.39 -0.02 0.78 16 38 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 39 H 0.41 3.40 8.40 -92.71 -0.78 2.62 16 40 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.06 1.06 8.02 -2.39 -0.02 1.05 16 42 H 0.08 1.29 7.76 -2.39 -0.02 1.28 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.03 0.97 7.57 -2.38 -0.02 0.95 16 45 H 0.05 1.97 7.39 -2.39 -0.02 1.96 16 46 H 0.12 3.07 8.11 -2.39 -0.02 3.05 16 47 H 0.08 2.04 7.82 -2.39 -0.02 2.02 16 48 H 0.39 15.37 5.76 -92.71 -0.53 14.83 16 49 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 50 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 51 H 0.06 1.05 7.93 -2.39 -0.02 1.03 16 Total: -1.00 -84.82 405.03 -4.22 -89.04 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.44 Total: 32.61 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 6.96 Total: 18.37 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -12.54 Total: -130.83 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -0.10 Total: -50.15 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 1.90 Total: 40.96 kcal Total: -84.82 -4.22 -89.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567395647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.962 kcal (2) G-P(sol) polarization free energy of solvation -84.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds