Wall clock time and date at job start Tue Mar 31 2020 22:21:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.47053 * 125.41272 * 2 1
4 4 C 1.54099 * 103.86470 * 180.02562 * 3 2 1
5 5 H 1.09005 * 110.67417 * 241.34903 * 4 3 2
6 6 C 1.50698 * 110.55266 * 118.59249 * 4 3 2
7 7 O 1.21277 * 120.00243 * 264.10035 * 6 4 3
8 8 N 1.34779 * 119.99934 * 84.10585 * 6 4 3
9 9 C 1.46500 * 120.00196 * 180.02562 * 8 6 4
10 10 H 1.09000 * 109.46967 * 325.00170 * 9 8 6
11 11 C 1.52997 * 109.47170 * 204.99986 * 9 8 6
12 12 N 1.46505 * 109.47212 * 54.99826 * 11 9 8
13 13 C 1.36936 * 119.99992 * 179.97438 * 12 11 9
14 14 H 1.08006 * 119.99834 * 0.02562 * 13 12 11
15 15 C 1.38801 * 120.00093 * 180.02562 * 13 12 11
16 16 N 1.31622 * 120.00145 * 180.02562 * 15 13 12
17 17 Si 1.86803 * 120.00180 * 0.02562 * 15 13 12
18 18 H 1.48492 * 109.47586 * 89.99558 * 17 15 13
19 19 H 1.48505 * 109.47293 * 210.00502 * 17 15 13
20 20 H 1.48505 * 109.46772 * 329.99807 * 17 15 13
21 21 C 1.52994 * 109.46849 * 84.99779 * 9 8 6
22 22 C 1.53001 * 109.47368 * 60.00535 * 21 9 8
23 23 C 1.53001 * 109.47242 * 180.02562 * 22 21 9
24 24 C 1.52997 * 109.47624 * 59.99472 * 23 22 21
25 25 C 1.53001 * 109.47049 * 300.00188 * 24 23 22
26 26 C 1.52997 * 109.47404 * 300.00064 * 21 9 8
27 27 N 1.47060 * 103.86242 * 359.97438 * 4 3 2
28 28 C 1.33945 * 125.40693 * 180.02562 * 2 1 3
29 29 O 1.21589 * 123.04434 * 359.97026 * 28 2 1
30 30 H 1.08998 * 109.47196 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46603 * 299.97491 * 1 2 3
32 32 H 1.09004 * 109.47146 * 59.97305 * 1 2 3
33 33 H 1.08996 * 110.54939 * 61.40958 * 3 2 1
34 34 H 1.09010 * 110.54733 * 298.59553 * 3 2 1
35 35 H 0.96998 * 119.99752 * 0.02562 * 8 6 4
36 36 H 1.09002 * 109.47153 * 294.99818 * 11 9 8
37 37 H 1.09001 * 109.46832 * 175.00009 * 11 9 8
38 38 H 0.96996 * 119.99606 * 0.02562 * 12 11 9
39 39 H 0.97010 * 119.99864 * 180.02562 * 16 15 13
40 40 H 1.09008 * 109.46970 * 180.02562 * 21 9 8
41 41 H 1.09008 * 109.46711 * 299.99168 * 22 21 9
42 42 H 1.08996 * 109.47271 * 59.99107 * 22 21 9
43 43 H 1.09008 * 109.46876 * 299.99444 * 23 22 21
44 44 H 1.09000 * 109.46891 * 179.97438 * 23 22 21
45 45 H 1.08994 * 109.47445 * 180.02562 * 24 23 22
46 46 H 1.08996 * 109.47166 * 59.99711 * 24 23 22
47 47 H 1.08998 * 109.47252 * 299.99805 * 25 24 23
48 48 H 1.09004 * 109.47455 * 179.97438 * 25 24 23
49 49 H 1.09000 * 109.47325 * 300.00168 * 26 21 9
50 50 H 1.08995 * 109.47630 * 59.99990 * 26 21 9
51 51 H 0.97001 * 125.41213 * 180.02562 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.3171 1.1985 0.0000
4 6 3.7504 0.6325 -0.0007
5 1 4.2883 0.9457 0.8942
6 6 4.4901 1.0666 -1.2398
7 8 4.5380 0.3343 -2.2053
8 7 5.0984 2.2688 -1.2750
9 6 5.8170 2.6911 -2.4798
10 1 6.2890 1.8250 -2.9437
11 6 6.8894 3.7147 -2.1016
12 7 7.7616 3.1494 -1.0691
13 6 8.8016 3.8883 -0.5715
14 1 8.9785 4.8881 -0.9399
15 6 9.6283 3.3525 0.4062
16 7 10.6276 4.0630 0.8849
17 14 9.3228 1.6231 1.0429
18 1 10.0833 0.6503 0.2180
19 1 9.7693 1.5297 2.4561
20 1 7.8725 1.3144 0.9606
21 6 4.8326 3.3241 -3.4651
22 6 4.1701 4.5399 -2.8141
23 6 3.1851 5.1726 -3.7992
24 6 2.1128 4.1488 -4.1769
25 6 2.7754 2.9330 -4.8281
26 6 3.7602 2.3005 -3.8434
27 7 3.5537 -0.8249 -0.0003
28 6 2.2411 -1.0917 -0.0005
29 8 1.7945 -2.2226 -0.0005
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3632 0.5135 0.8902
32 1 -0.3633 0.5143 -0.8898
33 1 2.1408 1.7933 0.8962
34 1 2.1407 1.7934 -0.8962
35 1 5.0605 2.8543 -0.5027
36 1 6.4118 4.6170 -1.7196
37 1 7.4820 3.9623 -2.9823
38 1 7.6029 2.2514 -0.7387
39 1 11.2056 3.6883 1.5680
40 1 5.3672 3.6380 -4.3618
41 1 3.6353 4.2257 -1.9177
42 1 4.9340 5.2691 -2.5445
43 1 3.7194 5.4868 -4.6959
44 1 2.7129 6.0385 -3.3352
45 1 1.4115 4.5993 -4.8791
46 1 1.5786 3.8346 -3.2803
47 1 3.3096 3.2471 -5.7247
48 1 2.0115 2.2033 -5.0968
49 1 4.2322 1.4344 -4.3073
50 1 3.2256 1.9863 -2.9471
51 1 4.2620 -1.4876 -0.0003
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001568346037.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:21:28
Heat of formation + Delta-G solvation = -46.344181 kcal
Electronic energy + Delta-G solvation = -31756.881886 eV
Core-core repulsion = 27691.514223 eV
Total energy + Delta-G solvation = -4065.367664 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.58014 -40.09719 -38.20191 -36.40162 -35.91256 -34.29419 -33.82122 -31.87707
-31.00945 -30.73252 -29.53878 -27.72193 -27.15255 -24.39382 -23.71711 -22.77860
-21.64054 -21.11804 -20.74048 -20.28710 -19.49961 -18.15339 -17.80870 -17.54952
-16.51662 -16.16887 -15.78381 -15.47855 -14.97949 -14.60361 -14.57683 -14.29943
-14.26326 -14.11677 -13.92356 -13.76087 -13.69596 -13.58967 -12.87910 -12.79208
-12.63736 -12.57049 -12.44145 -12.26325 -12.10129 -11.96761 -11.28130 -11.18259
-11.13614 -10.94748 -10.92931 -10.53657 -10.42877 -10.32658 -10.30738 -10.12779
-9.83297 -9.69928 -9.39420 -9.01838 -8.88273 -8.81981 -7.35651 -5.86958
-3.23715 2.21863 2.56330 2.80577 3.16631 3.25066 3.32163 3.38101
3.70622 4.01941 4.43412 4.48890 4.54219 4.59998 4.67551 4.73076
4.80187 4.99646 5.04866 5.11453 5.15745 5.24290 5.25832 5.37265
5.42344 5.42746 5.48098 5.52384 5.61023 5.62739 5.65175 5.66319
5.76901 5.91321 6.00724 6.05231 6.14460 6.15486 6.23429 6.31148
6.37941 6.39218 6.47284 6.53551 6.70040 6.89667 7.22603 7.51186
7.87819 8.16518 8.31495 8.40661 9.09817 9.81807 10.00643 11.31128
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.008614 B = 0.004718 C = 0.003319
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3249.929431 B = 5933.780136 C = 8434.990506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.120 3.880
2 N -0.636 5.636
3 C 0.109 3.891
4 C 0.100 3.900
5 H 0.117 0.883
6 C 0.501 3.499
7 O -0.521 6.521
8 N -0.705 5.705
9 C 0.139 3.861
10 H 0.088 0.912
11 C 0.147 3.853
12 N -0.754 5.754
13 C -0.248 4.248
14 H 0.091 0.909
15 C 0.008 3.992
16 N -0.931 5.931
17 Si 0.885 3.115
18 H -0.285 1.285
19 H -0.291 1.291
20 H -0.280 1.280
21 C -0.093 4.093
22 C -0.115 4.115
23 C -0.118 4.118
24 C -0.117 4.117
25 C -0.121 4.121
26 C -0.103 4.103
27 N -0.713 5.713
28 C 0.706 3.294
29 O -0.586 6.586
30 H 0.086 0.914
31 H 0.061 0.939
32 H 0.060 0.940
33 H 0.094 0.906
34 H 0.086 0.914
35 H 0.405 0.595
36 H 0.039 0.961
37 H 0.041 0.959
38 H 0.362 0.638
39 H 0.260 0.740
40 H 0.079 0.921
41 H 0.060 0.940
42 H 0.071 0.929
43 H 0.060 0.940
44 H 0.058 0.942
45 H 0.055 0.945
46 H 0.056 0.944
47 H 0.058 0.942
48 H 0.055 0.945
49 H 0.067 0.933
50 H 0.057 0.943
51 H 0.434 0.566
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.293 0.039 -4.947 21.860
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.022 4.022
2 N -0.376 5.376
3 C -0.016 4.016
4 C -0.011 4.011
5 H 0.134 0.866
6 C 0.284 3.716
7 O -0.396 6.396
8 N -0.357 5.357
9 C 0.035 3.965
10 H 0.106 0.894
11 C 0.020 3.980
12 N -0.401 5.401
13 C -0.377 4.377
14 H 0.109 0.891
15 C -0.188 4.188
16 N -0.579 5.579
17 Si 0.715 3.285
18 H -0.211 1.211
19 H -0.217 1.217
20 H -0.206 1.206
21 C -0.113 4.113
22 C -0.153 4.153
23 C -0.156 4.156
24 C -0.154 4.154
25 C -0.158 4.158
26 C -0.141 4.141
27 N -0.374 5.374
28 C 0.407 3.593
29 O -0.464 6.464
30 H 0.105 0.895
31 H 0.080 0.920
32 H 0.079 0.921
33 H 0.112 0.888
34 H 0.104 0.896
35 H 0.240 0.760
36 H 0.057 0.943
37 H 0.059 0.941
38 H 0.195 0.805
39 H 0.070 0.930
40 H 0.097 0.903
41 H 0.078 0.922
42 H 0.090 0.910
43 H 0.079 0.921
44 H 0.077 0.923
45 H 0.074 0.926
46 H 0.075 0.925
47 H 0.077 0.923
48 H 0.074 0.926
49 H 0.085 0.915
50 H 0.076 0.924
51 H 0.277 0.723
Dipole moment (debyes) X Y Z Total
from point charges -21.500 -0.869 -5.612 22.237
hybrid contribution 0.433 -1.008 0.892 1.414
sum -21.067 -1.877 -4.720 21.671
Atomic orbital electron populations
1.21411 0.75466 1.04028 1.01324 1.46960 1.06371 1.05566 1.78708
1.22251 0.86265 0.89070 1.03996 1.21900 0.97169 0.83383 0.98630
0.86566 1.20535 0.79887 0.82164 0.88994 1.90746 1.59863 1.53105
1.35876 1.46000 1.53338 1.18074 1.18316 1.21411 0.91690 0.98574
0.84869 0.89389 1.21023 0.89997 0.94081 0.92908 1.42687 1.34672
1.16570 1.46130 1.19027 1.03398 0.98798 1.16514 0.89124 1.24662
0.97457 0.97627 0.99084 1.69699 1.19202 1.36886 1.32074 0.86569
0.77400 0.86040 0.78442 1.21123 1.21710 1.20617 1.21520 0.96052
0.95530 0.98197 1.21640 0.98431 0.97104 0.98113 1.21526 0.96876
0.97645 0.99508 1.21517 0.97632 0.96155 1.00133 1.21565 0.98542
0.97026 0.98686 1.21593 0.96104 0.97453 0.98916 1.44825 1.06929
1.06216 1.79448 1.15789 0.81691 0.84609 0.77261 1.90954 1.75844
1.20908 1.58655 0.89531 0.92005 0.92104 0.88767 0.89604 0.75984
0.94344 0.94073 0.80534 0.92958 0.90267 0.92175 0.90996 0.92091
0.92309 0.92636 0.92517 0.92273 0.92646 0.91472 0.92392 0.72318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.12 0.93 11.21 59.85 0.67 1.60 16
2 N -0.64 -6.72 3.36 -186.73 -0.63 -7.35 16
3 C 0.11 0.88 7.32 -3.17 -0.02 0.86 16
4 C 0.10 1.02 4.17 -68.20 -0.28 0.73 16
5 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16
6 C 0.50 6.28 5.29 -10.99 -0.06 6.22 16
7 O -0.52 -8.26 13.72 5.56 0.08 -8.19 16
8 N -0.71 -8.42 3.64 -53.81 -0.20 -8.62 16
9 C 0.14 1.87 2.16 -67.94 -0.15 1.73 16
10 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16
11 C 0.15 2.41 5.60 -4.04 -0.02 2.39 16
12 N -0.75 -16.04 5.24 -59.91 -0.31 -16.36 16
13 C -0.25 -6.53 10.47 -15.06 -0.16 -6.69 16
14 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16
15 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16
16 N -0.93 -28.13 13.97 55.49 0.78 -27.36 16
17 Si 0.88 21.16 27.74 -169.99 -4.71 16.45 16
18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
20 H -0.28 -6.08 6.52 56.52 0.37 -5.71 16
21 C -0.09 -1.04 2.07 -90.62 -0.19 -1.23 16
22 C -0.12 -1.12 4.70 -26.73 -0.13 -1.25 16
23 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16
24 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16
25 C -0.12 -1.19 5.92 -26.75 -0.16 -1.35 16
26 C -0.10 -1.19 3.72 -26.75 -0.10 -1.29 16
27 N -0.71 -8.87 5.63 -59.32 -0.33 -9.20 16
28 C 0.71 9.97 8.60 -88.40 -0.76 9.21 16
29 O -0.59 -10.47 17.29 5.29 0.09 -10.38 16
30 H 0.09 0.78 7.52 -51.93 -0.39 0.39 16
31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.09 0.66 7.45 -51.92 -0.39 0.27 16
35 H 0.41 4.34 8.60 -40.82 -0.35 3.99 16
36 H 0.04 0.61 6.17 -51.93 -0.32 0.28 16
37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16
38 H 0.36 7.67 5.20 -40.82 -0.21 7.46 16
39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
40 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16
41 H 0.06 0.55 7.60 -51.92 -0.39 0.16 16
42 H 0.07 0.75 6.32 -51.93 -0.33 0.42 16
43 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16
44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
48 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
49 H 0.07 0.93 7.53 -51.93 -0.39 0.53 16
50 H 0.06 0.71 5.50 -51.93 -0.29 0.42 16
51 H 0.43 5.27 8.96 -40.82 -0.37 4.91 16
LS Contribution 392.44 15.07 5.91 5.91
Total: -1.00 -34.80 392.44 -9.58 -44.38
By element:
Atomic # 1 Polarization: 20.48 SS G_CDS: -8.48 Total: 12.00 kcal
Atomic # 6 Polarization: 10.48 SS G_CDS: -1.77 Total: 8.71 kcal
Atomic # 7 Polarization: -68.19 SS G_CDS: -0.70 Total: -68.89 kcal
Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.56 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -34.80 -9.58 -44.38 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568346037.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.964 kcal
(2) G-P(sol) polarization free energy of solvation -34.801 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.765 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.380 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.344 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds