Wall clock time and date at job start Tue Mar 31 2020 22:21:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.47053 * 125.41272 * 2 1
4 4 C 1.54099 * 103.86470 * 180.02562 * 3 2 1
5 5 H 1.09005 * 110.67417 * 241.34903 * 4 3 2
6 6 C 1.50698 * 110.55266 * 118.59249 * 4 3 2
7 7 O 1.21277 * 120.00243 * 264.10035 * 6 4 3
8 8 N 1.34779 * 119.99934 * 84.10585 * 6 4 3
9 9 C 1.46500 * 120.00196 * 180.02562 * 8 6 4
10 10 H 1.09000 * 109.46967 * 325.00170 * 9 8 6
11 11 C 1.52997 * 109.47170 * 204.99986 * 9 8 6
12 12 N 1.46505 * 109.47212 * 54.99826 * 11 9 8
13 13 C 1.36936 * 119.99992 * 179.97438 * 12 11 9
14 14 H 1.08006 * 119.99834 * 0.02562 * 13 12 11
15 15 C 1.38801 * 120.00093 * 180.02562 * 13 12 11
16 16 N 1.31622 * 120.00145 * 180.02562 * 15 13 12
17 17 Si 1.86803 * 120.00180 * 0.02562 * 15 13 12
18 18 H 1.48492 * 109.47586 * 89.99558 * 17 15 13
19 19 H 1.48505 * 109.47293 * 210.00502 * 17 15 13
20 20 H 1.48505 * 109.46772 * 329.99807 * 17 15 13
21 21 C 1.52994 * 109.46849 * 84.99779 * 9 8 6
22 22 C 1.53001 * 109.47368 * 60.00535 * 21 9 8
23 23 C 1.53001 * 109.47242 * 180.02562 * 22 21 9
24 24 C 1.52997 * 109.47624 * 59.99472 * 23 22 21
25 25 C 1.53001 * 109.47049 * 300.00188 * 24 23 22
26 26 C 1.52997 * 109.47404 * 300.00064 * 21 9 8
27 27 N 1.47060 * 103.86242 * 359.97438 * 4 3 2
28 28 C 1.33945 * 125.40693 * 180.02562 * 2 1 3
29 29 O 1.21589 * 123.04434 * 359.97026 * 28 2 1
30 30 H 1.08998 * 109.47196 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46603 * 299.97491 * 1 2 3
32 32 H 1.09004 * 109.47146 * 59.97305 * 1 2 3
33 33 H 1.08996 * 110.54939 * 61.40958 * 3 2 1
34 34 H 1.09010 * 110.54733 * 298.59553 * 3 2 1
35 35 H 0.96998 * 119.99752 * 0.02562 * 8 6 4
36 36 H 1.09002 * 109.47153 * 294.99818 * 11 9 8
37 37 H 1.09001 * 109.46832 * 175.00009 * 11 9 8
38 38 H 0.96996 * 119.99606 * 0.02562 * 12 11 9
39 39 H 0.97010 * 119.99864 * 180.02562 * 16 15 13
40 40 H 1.09008 * 109.46970 * 180.02562 * 21 9 8
41 41 H 1.09008 * 109.46711 * 299.99168 * 22 21 9
42 42 H 1.08996 * 109.47271 * 59.99107 * 22 21 9
43 43 H 1.09008 * 109.46876 * 299.99444 * 23 22 21
44 44 H 1.09000 * 109.46891 * 179.97438 * 23 22 21
45 45 H 1.08994 * 109.47445 * 180.02562 * 24 23 22
46 46 H 1.08996 * 109.47166 * 59.99711 * 24 23 22
47 47 H 1.08998 * 109.47252 * 299.99805 * 25 24 23
48 48 H 1.09004 * 109.47455 * 179.97438 * 25 24 23
49 49 H 1.09000 * 109.47325 * 300.00168 * 26 21 9
50 50 H 1.08995 * 109.47630 * 59.99990 * 26 21 9
51 51 H 0.97001 * 125.41213 * 180.02562 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.3171 1.1985 0.0000
4 6 3.7504 0.6325 -0.0007
5 1 4.2883 0.9457 0.8942
6 6 4.4901 1.0666 -1.2398
7 8 4.5380 0.3343 -2.2053
8 7 5.0984 2.2688 -1.2750
9 6 5.8170 2.6911 -2.4798
10 1 6.2890 1.8250 -2.9437
11 6 6.8894 3.7147 -2.1016
12 7 7.7616 3.1494 -1.0691
13 6 8.8016 3.8883 -0.5715
14 1 8.9785 4.8881 -0.9399
15 6 9.6283 3.3525 0.4062
16 7 10.6276 4.0630 0.8849
17 14 9.3228 1.6231 1.0429
18 1 10.0833 0.6503 0.2180
19 1 9.7693 1.5297 2.4561
20 1 7.8725 1.3144 0.9606
21 6 4.8326 3.3241 -3.4651
22 6 4.1701 4.5399 -2.8141
23 6 3.1851 5.1726 -3.7992
24 6 2.1128 4.1488 -4.1769
25 6 2.7754 2.9330 -4.8281
26 6 3.7602 2.3005 -3.8434
27 7 3.5537 -0.8249 -0.0003
28 6 2.2411 -1.0917 -0.0005
29 8 1.7945 -2.2226 -0.0005
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3632 0.5135 0.8902
32 1 -0.3633 0.5143 -0.8898
33 1 2.1408 1.7933 0.8962
34 1 2.1407 1.7934 -0.8962
35 1 5.0605 2.8543 -0.5027
36 1 6.4118 4.6170 -1.7196
37 1 7.4820 3.9623 -2.9823
38 1 7.6029 2.2514 -0.7387
39 1 11.2056 3.6883 1.5680
40 1 5.3672 3.6380 -4.3618
41 1 3.6353 4.2257 -1.9177
42 1 4.9340 5.2691 -2.5445
43 1 3.7194 5.4868 -4.6959
44 1 2.7129 6.0385 -3.3352
45 1 1.4115 4.5993 -4.8791
46 1 1.5786 3.8346 -3.2803
47 1 3.3096 3.2471 -5.7247
48 1 2.0115 2.2033 -5.0968
49 1 4.2322 1.4344 -4.3073
50 1 3.2256 1.9863 -2.9471
51 1 4.2620 -1.4876 -0.0003
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001568346037.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:21:27
Heat of formation + Delta-G solvation = -72.265733 kcal
Electronic energy + Delta-G solvation = -31758.005929 eV
Core-core repulsion = 27691.514223 eV
Total energy + Delta-G solvation = -4066.491706 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.49785 -41.10280 -39.15216 -37.47306 -37.19047 -35.38169 -35.09126 -33.37995
-32.37969 -31.56331 -30.36835 -28.87349 -28.07438 -25.59313 -24.78640 -23.85289
-22.88512 -22.13698 -21.62126 -21.26078 -20.39413 -19.79067 -18.83005 -18.65592
-17.47950 -17.16911 -16.87448 -16.49657 -16.29910 -15.89302 -15.65752 -15.41802
-15.21664 -14.97076 -14.92558 -14.77235 -14.64731 -14.55733 -14.48492 -13.92139
-13.67557 -13.49153 -13.43869 -13.21831 -12.98612 -12.94976 -12.84167 -12.54194
-12.28247 -12.01145 -11.95136 -11.87410 -11.77785 -11.56881 -11.36734 -11.26319
-11.09275 -10.99630 -10.70425 -10.40273 -9.92184 -9.59532 -9.27241 -8.00587
-5.33704 1.33434 1.34919 1.41734 1.47764 1.65738 1.84158 2.18817
2.48662 2.88712 3.26326 3.32319 3.44272 3.61056 3.79268 3.85546
3.90213 4.00855 4.11408 4.15369 4.29814 4.44359 4.49667 4.52533
4.53716 4.57863 4.69496 4.71603 4.73185 4.76667 4.84515 4.87622
4.92761 4.95146 5.07792 5.17104 5.27898 5.28829 5.34653 5.37235
5.45905 5.54823 5.59952 5.61685 5.68403 5.79876 5.96539 6.22597
6.32032 6.55345 7.09949 7.20250 7.41524 7.85119 8.03258 9.20711
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.008614 B = 0.004718 C = 0.003319
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3249.929431 B = 5933.780136 C = 8434.990506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.114 3.886
2 N -0.633 5.633
3 C 0.110 3.890
4 C 0.100 3.900
5 H 0.145 0.855
6 C 0.503 3.497
7 O -0.558 6.558
8 N -0.698 5.698
9 C 0.152 3.848
10 H 0.062 0.938
11 C 0.148 3.852
12 N -0.754 5.754
13 C -0.227 4.227
14 H 0.062 0.938
15 C -0.059 4.059
16 N -0.983 5.983
17 Si 0.947 3.053
18 H -0.294 1.294
19 H -0.297 1.297
20 H -0.242 1.242
21 C -0.085 4.085
22 C -0.112 4.112
23 C -0.116 4.116
24 C -0.112 4.112
25 C -0.119 4.119
26 C -0.093 4.093
27 N -0.717 5.717
28 C 0.693 3.307
29 O -0.635 6.635
30 H 0.066 0.934
31 H 0.090 0.910
32 H 0.078 0.922
33 H 0.135 0.865
34 H 0.095 0.905
35 H 0.415 0.585
36 H 0.056 0.944
37 H 0.034 0.966
38 H 0.364 0.636
39 H 0.256 0.744
40 H 0.076 0.924
41 H 0.072 0.928
42 H 0.066 0.934
43 H 0.058 0.942
44 H 0.072 0.928
45 H 0.066 0.934
46 H 0.063 0.937
47 H 0.058 0.942
48 H 0.054 0.946
49 H 0.037 0.963
50 H 0.054 0.946
51 H 0.432 0.568
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.992 1.048 -4.457 24.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.027 4.027
2 N -0.372 5.372
3 C -0.013 4.013
4 C -0.009 4.009
5 H 0.162 0.838
6 C 0.287 3.713
7 O -0.435 6.435
8 N -0.351 5.351
9 C 0.047 3.953
10 H 0.081 0.919
11 C 0.022 3.978
12 N -0.400 5.400
13 C -0.358 4.358
14 H 0.080 0.920
15 C -0.250 4.250
16 N -0.633 5.633
17 Si 0.775 3.225
18 H -0.221 1.221
19 H -0.224 1.224
20 H -0.167 1.167
21 C -0.105 4.105
22 C -0.149 4.149
23 C -0.153 4.153
24 C -0.150 4.150
25 C -0.156 4.156
26 C -0.131 4.131
27 N -0.376 5.376
28 C 0.394 3.606
29 O -0.517 6.517
30 H 0.085 0.915
31 H 0.109 0.891
32 H 0.097 0.903
33 H 0.153 0.847
34 H 0.113 0.887
35 H 0.252 0.748
36 H 0.074 0.926
37 H 0.052 0.948
38 H 0.198 0.802
39 H 0.065 0.935
40 H 0.095 0.905
41 H 0.090 0.910
42 H 0.085 0.915
43 H 0.076 0.924
44 H 0.091 0.909
45 H 0.085 0.915
46 H 0.082 0.918
47 H 0.077 0.923
48 H 0.073 0.927
49 H 0.056 0.944
50 H 0.073 0.927
51 H 0.273 0.727
Dipole moment (debyes) X Y Z Total
from point charges -24.264 0.199 -5.142 24.804
hybrid contribution 1.284 -1.234 0.610 1.882
sum -22.980 -1.035 -4.532 23.446
Atomic orbital electron populations
1.21632 0.73972 1.03510 1.03602 1.47156 1.07318 1.05318 1.77425
1.22531 0.84091 0.88205 1.06431 1.22133 0.98706 0.82062 0.98038
0.83802 1.20972 0.79402 0.81579 0.89318 1.90751 1.61193 1.54094
1.37495 1.45891 1.52810 1.18249 1.18105 1.21118 0.91565 0.96795
0.85859 0.91932 1.21163 0.89992 0.95365 0.91316 1.42659 1.34165
1.16346 1.46862 1.19014 1.03844 0.97806 1.15153 0.92005 1.25393
0.97682 1.01755 1.00198 1.69871 1.20939 1.39096 1.33435 0.85542
0.79263 0.80752 0.76925 1.22131 1.22430 1.16651 1.21440 0.95467
0.96064 0.97567 1.21614 0.98569 0.95971 0.98760 1.21511 0.96606
0.98015 0.99174 1.21489 0.97634 0.95281 1.00562 1.21547 0.98126
0.97657 0.98313 1.21449 0.96224 0.96489 0.98950 1.44897 1.06475
1.07378 1.78858 1.16125 0.82381 0.84801 0.77326 1.90905 1.76766
1.23086 1.60986 0.91507 0.89109 0.90350 0.84723 0.88693 0.74793
0.92607 0.94776 0.80230 0.93471 0.90523 0.90976 0.91523 0.92360
0.90943 0.91495 0.91836 0.92315 0.92727 0.94404 0.92704 0.72660
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 1.48 11.21 127.77 1.43 2.91 16
2 N -0.63 -11.77 3.36 -863.43 -2.90 -14.66 16
3 C 0.11 1.33 7.32 86.65 0.63 1.97 16
4 C 0.10 1.73 4.17 44.51 0.19 1.91 16
5 H 0.14 1.74 8.14 -2.38 -0.02 1.72 16
6 C 0.50 11.48 5.29 87.66 0.46 11.94 16
7 O -0.56 -17.28 13.72 -3.02 -0.04 -17.32 16
8 N -0.70 -14.82 3.64 -442.55 -1.61 -16.44 16
9 C 0.15 3.87 2.16 44.99 0.10 3.97 16
10 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16
11 C 0.15 4.62 5.60 86.38 0.48 5.11 16
12 N -0.75 -30.94 5.24 -343.45 -1.80 -32.74 16
13 C -0.23 -11.91 10.47 84.03 0.88 -11.03 16
14 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16
15 C -0.06 -3.26 5.50 84.86 0.47 -2.80 16
16 N -0.98 -60.51 13.97 21.65 0.30 -60.20 16
17 Si 0.95 43.16 27.74 68.60 1.90 45.06 16
18 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16
19 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16
20 H -0.24 -9.39 6.52 99.48 0.65 -8.74 16
21 C -0.09 -1.77 2.07 -10.80 -0.02 -1.79 16
22 C -0.11 -1.84 4.70 30.60 0.14 -1.69 16
23 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16
24 C -0.11 -1.56 5.92 30.59 0.18 -1.38 16
25 C -0.12 -2.11 5.92 30.58 0.18 -1.93 16
26 C -0.09 -2.03 3.72 30.58 0.11 -1.92 16
27 N -0.72 -16.83 5.63 -460.33 -2.59 -19.42 16
28 C 0.69 18.93 8.60 179.57 1.54 20.48 16
29 O -0.64 -23.03 17.29 -3.99 -0.07 -23.10 16
30 H 0.07 1.15 7.52 -2.39 -0.02 1.14 16
31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16
32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16
33 H 0.13 0.64 8.14 -2.39 -0.02 0.63 16
34 H 0.09 1.03 7.45 -2.38 -0.02 1.01 16
35 H 0.42 7.31 8.60 -92.71 -0.80 6.51 16
36 H 0.06 1.62 6.17 -2.39 -0.01 1.60 16
37 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16
38 H 0.36 14.60 5.20 -92.71 -0.48 14.11 16
39 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16
40 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16
41 H 0.07 1.03 7.60 -2.38 -0.02 1.01 16
42 H 0.07 1.19 6.32 -2.39 -0.02 1.18 16
43 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16
44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16
46 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16
47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
48 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
49 H 0.04 1.04 7.53 -2.39 -0.02 1.02 16
50 H 0.05 1.22 5.50 -2.39 -0.01 1.21 16
51 H 0.43 10.24 8.96 -92.71 -0.83 9.41 16
Total: -1.00 -78.62 392.44 -1.05 -79.66
By element:
Atomic # 1 Polarization: 36.08 SS G_CDS: -1.21 Total: 34.87 kcal
Atomic # 6 Polarization: 17.32 SS G_CDS: 6.97 Total: 24.29 kcal
Atomic # 7 Polarization: -134.87 SS G_CDS: -8.60 Total: -143.46 kcal
Atomic # 8 Polarization: -40.31 SS G_CDS: -0.11 Total: -40.42 kcal
Atomic # 14 Polarization: 43.16 SS G_CDS: 1.90 Total: 45.06 kcal
Total: -78.62 -1.05 -79.66 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568346037.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.397 kcal
(2) G-P(sol) polarization free energy of solvation -78.616 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.219 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.047 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.266 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds