Wall clock time and date at job start Tue Mar 31 2020 22:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46853 * 110.99572 * 2 1 4 4 C 1.53037 * 109.51977 * 185.84166 * 3 2 1 5 5 C 1.53121 * 109.27934 * 300.81456 * 4 3 2 6 6 C 1.50695 * 109.52343 * 177.56061 * 5 4 3 7 7 O 1.21282 * 120.00383 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00024 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00092 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.47064 * 180.02562 * 9 8 6 11 11 H 1.09001 * 112.78472 * 284.18945 * 10 9 8 12 12 C 1.53509 * 113.47430 * 153.38126 * 10 9 8 13 13 C 1.53517 * 83.57536 * 219.20766 * 12 10 9 14 14 N 1.47473 * 113.47472 * 55.00003 * 10 9 8 15 15 C 1.46895 * 111.00172 * 253.46865 * 14 10 9 16 16 C 1.50696 * 109.47426 * 198.37844 * 15 14 10 17 17 O 1.21296 * 120.00268 * 353.84405 * 16 15 14 18 18 N 1.34777 * 120.00158 * 173.84568 * 16 15 14 19 19 C 1.37097 * 120.00048 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00484 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99941 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00314 * 359.72754 * 21 19 18 23 23 Si 1.86802 * 120.00003 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47143 * 60.00289 * 23 21 19 25 25 H 1.48501 * 109.47234 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47054 * 300.00008 * 23 21 19 27 27 C 1.53121 * 109.15816 * 57.65881 * 5 4 3 28 28 C 1.46845 * 111.00354 * 124.20697 * 2 1 3 29 29 H 1.08998 * 109.47581 * 60.00383 * 1 2 3 30 30 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47380 * 299.99800 * 1 2 3 32 32 H 1.08995 * 109.46365 * 65.82104 * 3 2 1 33 33 H 1.08998 * 109.45897 * 305.85134 * 3 2 1 34 34 H 1.09006 * 109.49996 * 180.88035 * 4 3 2 35 35 H 1.09001 * 109.50577 * 60.76073 * 4 3 2 36 36 H 1.08994 * 109.52324 * 297.69557 * 5 4 3 37 37 H 0.97004 * 119.99846 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.47442 * 60.00402 * 9 8 6 39 39 H 1.09000 * 109.47369 * 300.00065 * 9 8 6 40 40 H 1.09002 * 114.17215 * 105.55870 * 12 10 9 41 41 H 1.09003 * 114.34777 * 332.86478 * 12 10 9 42 42 H 1.08995 * 113.47564 * 271.26088 * 13 12 10 43 43 H 1.08998 * 113.52651 * 140.80095 * 13 12 10 44 44 H 1.09003 * 109.47044 * 78.37460 * 15 14 10 45 45 H 1.09004 * 109.46884 * 318.37771 * 15 14 10 46 46 H 0.97002 * 119.99888 * 359.97438 * 18 16 15 47 47 H 0.96996 * 120.00558 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.50277 * 62.28569 * 27 5 4 49 49 H 1.08997 * 109.50636 * 182.40798 * 27 5 4 50 50 H 1.09000 * 109.46327 * 294.18104 * 28 2 1 51 51 H 1.08996 * 109.46018 * 54.14640 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3343 -0.1468 5 6 4.1188 0.5372 1.0144 6 6 5.6132 0.4466 0.8431 7 8 6.1468 0.9682 -0.1130 8 7 6.3570 -0.2133 1.7529 9 6 7.8099 -0.3009 1.5867 10 6 8.4089 -1.0976 2.7476 11 1 8.4570 -0.5238 3.6730 12 6 9.7283 -1.7973 2.3924 13 6 9.1537 -2.9369 3.2457 14 7 7.8074 -2.4336 2.9153 15 6 6.9281 -2.4713 4.0914 16 6 6.6947 -3.9033 4.4986 17 8 7.1167 -4.8067 3.8079 18 7 6.0172 -4.1802 5.6303 19 6 5.8054 -5.4830 6.0010 20 1 6.1811 -6.2874 5.3861 21 6 5.1074 -5.7685 7.1681 22 7 4.6548 -4.7898 7.9192 23 14 4.8181 -7.5436 7.6728 24 1 6.1246 -8.2239 7.8608 25 1 4.0539 -7.5781 8.9457 26 1 4.0453 -8.2400 6.6131 27 6 3.5182 -0.8713 1.0209 28 6 1.9953 -0.7707 1.1337 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7323 1.8609 0.9375 33 1 1.5633 1.9257 -0.8330 34 1 3.9097 2.3514 -0.1311 35 1 3.7812 0.8569 -1.0907 36 1 3.8895 1.0362 1.9558 37 1 5.9303 -0.6302 2.5179 38 1 8.2356 0.7025 1.5765 39 1 8.0385 -0.8022 0.6463 40 1 10.6132 -1.3238 2.8177 41 1 9.8370 -2.0421 1.3358 42 1 9.4007 -2.8539 4.3040 43 1 9.3580 -3.9285 2.8417 44 1 5.9746 -2.0029 3.8473 45 1 7.3980 -1.9316 4.9137 46 1 5.6801 -3.4578 6.1829 47 1 4.1672 -4.9891 8.7336 48 1 3.7814 -1.3834 0.0954 49 1 3.9099 -1.4300 1.8708 50 1 1.7324 -0.2708 2.0660 51 1 1.5635 -1.7714 1.1242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569374866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:45 Heat of formation + Delta-G solvation = -36.769293 kcal Electronic energy + Delta-G solvation = -30220.978189 eV Core-core repulsion = 26156.025724 eV Total energy + Delta-G solvation = -4064.952465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.64635 -39.95348 -38.34783 -37.76375 -34.56359 -33.98027 -33.73992 -31.45514 -31.06198 -30.68148 -28.70915 -26.98986 -25.86674 -23.85561 -23.79650 -23.34219 -22.64710 -20.75790 -19.92856 -19.53590 -19.30129 -17.97553 -17.41488 -16.36345 -16.11697 -15.98148 -15.53323 -15.31093 -15.18755 -14.91434 -14.77241 -14.53769 -14.17179 -13.94884 -13.79726 -13.70299 -13.61468 -13.07536 -12.77317 -12.64309 -12.55542 -12.32567 -11.96915 -11.83138 -11.72559 -11.54922 -11.43876 -11.40199 -11.33605 -11.10349 -10.87586 -10.81522 -10.64250 -10.51290 -10.48327 -10.27499 -9.68626 -9.55688 -9.02779 -8.77239 -8.55986 -8.35181 -8.03718 -6.48527 -3.89551 2.64710 3.13229 3.15616 3.21683 3.25875 3.69975 3.80550 3.95053 4.16561 4.41455 4.47615 4.57990 4.68186 4.75186 4.90691 4.91245 4.96029 5.05566 5.10062 5.16736 5.18284 5.27206 5.32932 5.35824 5.39137 5.42083 5.47509 5.51659 5.60434 5.63588 5.65807 5.72309 5.72417 5.81317 5.84093 5.91211 6.03075 6.05948 6.16029 6.19187 6.24290 6.42510 6.56469 6.82264 6.85085 7.15240 7.48595 7.50020 7.98036 8.22811 8.53409 9.10893 9.45772 9.97224 10.68935 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008625 B = 0.003197 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.630200 B = 8755.903981 C =11519.597333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.055 3.945 4 C -0.095 4.095 5 C -0.109 4.109 6 C 0.519 3.481 7 O -0.546 6.546 8 N -0.721 5.721 9 C 0.141 3.859 10 C 0.004 3.996 11 H 0.082 0.918 12 C -0.137 4.137 13 C 0.016 3.984 14 N -0.436 5.436 15 C 0.008 3.992 16 C 0.441 3.559 17 O -0.576 6.576 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.024 3.976 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.108 4.108 28 C 0.056 3.944 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.391 0.609 47 H 0.272 0.728 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.036 0.964 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 14.424 -9.628 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.133 4.133 5 C -0.130 4.130 6 C 0.305 3.695 7 O -0.423 6.423 8 N -0.372 5.372 9 C 0.017 3.983 10 C -0.107 4.107 11 H 0.100 0.900 12 C -0.175 4.175 13 C -0.113 4.113 14 N -0.159 5.159 15 C -0.124 4.124 16 C 0.226 3.774 17 O -0.460 6.460 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.198 1.198 27 C -0.147 4.147 28 C -0.071 4.071 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.236 0.764 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.224 0.776 47 H 0.082 0.918 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.055 0.945 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.554 13.627 -11.529 17.917 hybrid contribution -0.649 0.113 2.783 2.860 sum -2.203 13.740 -8.746 16.435 Atomic orbital electron populations 1.22350 0.87191 1.02250 1.00527 1.61927 1.07619 1.13769 1.43641 1.22132 0.95453 0.89148 1.00523 1.21392 0.93213 1.00278 0.98394 1.21405 0.91519 0.98797 1.01308 1.20571 0.89158 0.77652 0.82080 1.90676 1.74003 1.46938 1.30696 1.45991 1.08011 1.55727 1.27516 1.21307 0.79564 0.99171 0.98258 1.23840 0.95584 0.92766 0.98472 0.90029 1.23208 0.95467 0.97037 1.01815 1.23539 0.88875 1.00193 0.98683 1.68901 1.08037 1.07144 1.31837 1.22548 0.98955 0.97853 0.93084 1.19608 0.84746 0.89359 0.83681 1.90543 1.54496 1.46997 1.53944 1.41862 1.48621 1.08803 1.20591 1.19648 1.32988 0.83958 1.06404 0.87959 1.25251 0.96759 0.99745 0.96014 1.69592 1.37670 1.31945 1.15048 0.85926 0.78635 0.81950 0.77789 1.19884 1.20939 1.19829 1.21592 0.94595 0.94641 1.03822 1.22097 0.95003 0.98727 0.91307 0.91395 0.91224 0.95711 0.94886 0.90465 0.90876 0.90136 0.88978 0.76414 0.91408 0.90820 0.90572 0.88658 0.91609 0.88786 0.89784 0.92659 0.77555 0.91771 0.90211 0.90528 0.94541 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.59 60.06 0.58 0.78 16 2 N -0.54 -5.45 4.91 -242.97 -1.19 -6.64 16 3 C 0.06 0.50 5.46 -3.83 -0.02 0.48 16 4 C -0.09 -0.98 4.68 -26.65 -0.12 -1.11 16 5 C -0.11 -1.15 2.59 -91.65 -0.24 -1.39 16 6 C 0.52 6.75 7.15 -10.99 -0.08 6.68 16 7 O -0.55 -8.84 15.98 5.56 0.09 -8.75 16 8 N -0.72 -8.65 5.37 -60.29 -0.32 -8.98 16 9 C 0.14 1.66 5.82 -4.04 -0.02 1.64 16 10 C 0.00 0.04 3.25 -71.44 -0.23 -0.19 16 11 H 0.08 0.85 7.63 -51.93 -0.40 0.46 16 12 C -0.14 -1.50 8.00 -26.20 -0.21 -1.71 16 13 C 0.02 0.23 6.34 -7.54 -0.05 0.19 16 14 N -0.44 -6.67 5.74 -237.95 -1.37 -8.04 16 15 C 0.01 0.13 5.09 -4.98 -0.03 0.10 16 16 C 0.44 9.89 7.46 -10.99 -0.08 9.81 16 17 O -0.58 -15.06 14.98 5.54 0.08 -14.97 16 18 N -0.56 -13.63 5.29 -10.96 -0.06 -13.68 16 19 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 20 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 21 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 22 N -0.90 -23.78 13.05 55.50 0.72 -23.05 16 23 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 C -0.11 -1.17 5.26 -26.65 -0.14 -1.31 16 28 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 4.53 5.82 -40.82 -0.24 4.29 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.02 7.94 -51.93 -0.41 0.61 16 42 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 43 H 0.09 1.58 7.97 -51.93 -0.41 1.17 16 44 H 0.08 1.21 6.56 -51.93 -0.34 0.87 16 45 H 0.06 0.80 7.56 -51.93 -0.39 0.41 16 46 H 0.39 9.03 7.90 -40.82 -0.32 8.71 16 47 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 48 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.08 0.83 7.67 -51.93 -0.40 0.43 16 50 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -32.15 403.38 -10.62 -42.77 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -8.72 Total: 12.92 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -0.91 Total: 6.77 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -2.22 Total: -60.39 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.17 Total: -23.72 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.15 -10.62 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569374866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.005 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds