Wall clock time and date at job start Tue Mar 31 2020 22:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46853 * 110.99572 * 2 1 4 4 C 1.53037 * 109.51977 * 185.84166 * 3 2 1 5 5 C 1.53121 * 109.27934 * 300.81456 * 4 3 2 6 6 C 1.50695 * 109.52343 * 177.56061 * 5 4 3 7 7 O 1.21282 * 120.00383 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00024 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00092 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.47064 * 180.02562 * 9 8 6 11 11 H 1.09001 * 112.78472 * 284.18945 * 10 9 8 12 12 C 1.53509 * 113.47430 * 153.38126 * 10 9 8 13 13 C 1.53517 * 83.57536 * 219.20766 * 12 10 9 14 14 N 1.47473 * 113.47472 * 55.00003 * 10 9 8 15 15 C 1.46895 * 111.00172 * 253.46865 * 14 10 9 16 16 C 1.50696 * 109.47426 * 198.37844 * 15 14 10 17 17 O 1.21296 * 120.00268 * 353.84405 * 16 15 14 18 18 N 1.34777 * 120.00158 * 173.84568 * 16 15 14 19 19 C 1.37097 * 120.00048 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00484 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99941 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00314 * 359.72754 * 21 19 18 23 23 Si 1.86802 * 120.00003 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47143 * 60.00289 * 23 21 19 25 25 H 1.48501 * 109.47234 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47054 * 300.00008 * 23 21 19 27 27 C 1.53121 * 109.15816 * 57.65881 * 5 4 3 28 28 C 1.46845 * 111.00354 * 124.20697 * 2 1 3 29 29 H 1.08998 * 109.47581 * 60.00383 * 1 2 3 30 30 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47380 * 299.99800 * 1 2 3 32 32 H 1.08995 * 109.46365 * 65.82104 * 3 2 1 33 33 H 1.08998 * 109.45897 * 305.85134 * 3 2 1 34 34 H 1.09006 * 109.49996 * 180.88035 * 4 3 2 35 35 H 1.09001 * 109.50577 * 60.76073 * 4 3 2 36 36 H 1.08994 * 109.52324 * 297.69557 * 5 4 3 37 37 H 0.97004 * 119.99846 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.47442 * 60.00402 * 9 8 6 39 39 H 1.09000 * 109.47369 * 300.00065 * 9 8 6 40 40 H 1.09002 * 114.17215 * 105.55870 * 12 10 9 41 41 H 1.09003 * 114.34777 * 332.86478 * 12 10 9 42 42 H 1.08995 * 113.47564 * 271.26088 * 13 12 10 43 43 H 1.08998 * 113.52651 * 140.80095 * 13 12 10 44 44 H 1.09003 * 109.47044 * 78.37460 * 15 14 10 45 45 H 1.09004 * 109.46884 * 318.37771 * 15 14 10 46 46 H 0.97002 * 119.99888 * 359.97438 * 18 16 15 47 47 H 0.96996 * 120.00558 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.50277 * 62.28569 * 27 5 4 49 49 H 1.08997 * 109.50636 * 182.40798 * 27 5 4 50 50 H 1.09000 * 109.46327 * 294.18104 * 28 2 1 51 51 H 1.08996 * 109.46018 * 54.14640 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3343 -0.1468 5 6 4.1188 0.5372 1.0144 6 6 5.6132 0.4466 0.8431 7 8 6.1468 0.9682 -0.1130 8 7 6.3570 -0.2133 1.7529 9 6 7.8099 -0.3009 1.5867 10 6 8.4089 -1.0976 2.7476 11 1 8.4570 -0.5238 3.6730 12 6 9.7283 -1.7973 2.3924 13 6 9.1537 -2.9369 3.2457 14 7 7.8074 -2.4336 2.9153 15 6 6.9281 -2.4713 4.0914 16 6 6.6947 -3.9033 4.4986 17 8 7.1167 -4.8067 3.8079 18 7 6.0172 -4.1802 5.6303 19 6 5.8054 -5.4830 6.0010 20 1 6.1811 -6.2874 5.3861 21 6 5.1074 -5.7685 7.1681 22 7 4.6548 -4.7898 7.9192 23 14 4.8181 -7.5436 7.6728 24 1 6.1246 -8.2239 7.8608 25 1 4.0539 -7.5781 8.9457 26 1 4.0453 -8.2400 6.6131 27 6 3.5182 -0.8713 1.0209 28 6 1.9953 -0.7707 1.1337 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7323 1.8609 0.9375 33 1 1.5633 1.9257 -0.8330 34 1 3.9097 2.3514 -0.1311 35 1 3.7812 0.8569 -1.0907 36 1 3.8895 1.0362 1.9558 37 1 5.9303 -0.6302 2.5179 38 1 8.2356 0.7025 1.5765 39 1 8.0385 -0.8022 0.6463 40 1 10.6132 -1.3238 2.8177 41 1 9.8370 -2.0421 1.3358 42 1 9.4007 -2.8539 4.3040 43 1 9.3580 -3.9285 2.8417 44 1 5.9746 -2.0029 3.8473 45 1 7.3980 -1.9316 4.9137 46 1 5.6801 -3.4578 6.1829 47 1 4.1672 -4.9891 8.7336 48 1 3.7814 -1.3834 0.0954 49 1 3.9099 -1.4300 1.8708 50 1 1.7324 -0.2708 2.0660 51 1 1.5635 -1.7714 1.1242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569374866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:44 Heat of formation + Delta-G solvation = -62.805672 kcal Electronic energy + Delta-G solvation = -30222.107211 eV Core-core repulsion = 26156.025724 eV Total energy + Delta-G solvation = -4066.081487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74342 -40.99189 -39.59846 -39.14175 -35.98310 -35.56264 -34.57292 -33.33768 -32.09119 -31.81033 -29.68931 -27.78868 -27.54399 -25.36080 -24.73821 -24.15550 -23.58499 -21.70138 -21.09939 -20.85920 -20.43158 -19.90902 -18.37516 -17.80730 -17.26192 -17.09951 -16.59906 -16.51881 -16.30346 -16.06351 -15.96816 -15.59977 -15.54467 -15.41682 -14.95204 -14.88065 -14.49289 -14.23991 -13.94142 -13.72775 -13.54620 -13.41805 -13.31673 -13.10455 -12.90916 -12.77651 -12.58286 -12.45441 -12.37403 -12.26685 -12.15905 -12.13869 -11.91320 -11.70419 -11.64968 -11.47862 -11.42641 -10.72165 -10.31502 -10.04625 -10.01732 -9.78146 -9.27658 -8.47292 -5.95490 1.38565 1.41496 1.51394 1.62802 2.03326 2.18719 2.28189 2.83716 2.98389 3.19189 3.24346 3.55240 3.60538 3.73453 3.79688 3.82001 4.05109 4.15626 4.16778 4.23874 4.26802 4.34056 4.35761 4.43784 4.45776 4.51472 4.55174 4.56071 4.65938 4.71990 4.74448 4.86382 4.88304 4.90066 4.94013 5.00663 5.03973 5.08027 5.14860 5.19705 5.30943 5.35081 5.40888 5.51574 5.91549 6.09315 6.10529 6.14072 6.52078 6.59792 7.12641 7.22974 7.55449 8.11590 8.69559 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008625 B = 0.003197 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.630200 B = 8755.903981 C =11519.597333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.562 5.562 3 C 0.059 3.941 4 C -0.091 4.091 5 C -0.103 4.103 6 C 0.517 3.483 7 O -0.581 6.581 8 N -0.716 5.716 9 C 0.142 3.858 10 C 0.017 3.983 11 H 0.106 0.894 12 C -0.117 4.117 13 C 0.006 3.994 14 N -0.462 5.462 15 C 0.020 3.980 16 C 0.440 3.560 17 O -0.618 6.618 18 N -0.571 5.571 19 C -0.333 4.333 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.918 5.918 23 Si 0.988 3.012 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.273 1.273 27 C -0.104 4.104 28 C 0.058 3.942 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.405 0.595 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.057 0.943 49 H 0.075 0.925 50 H 0.046 0.954 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 16.076 -8.727 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.287 5.287 3 C -0.068 4.068 4 C -0.129 4.129 5 C -0.124 4.124 6 C 0.304 3.696 7 O -0.461 6.461 8 N -0.367 5.367 9 C 0.018 3.982 10 C -0.093 4.093 11 H 0.124 0.876 12 C -0.155 4.155 13 C -0.123 4.123 14 N -0.186 5.186 15 C -0.111 4.111 16 C 0.227 3.773 17 O -0.504 6.504 18 N -0.208 5.208 19 C -0.463 4.463 20 H 0.094 0.906 21 C -0.209 4.209 22 N -0.558 5.558 23 Si 0.812 3.188 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.142 4.142 28 C -0.070 4.070 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.241 0.759 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.125 0.875 45 H 0.099 0.901 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.094 0.906 50 H 0.064 0.936 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.979 15.297 -10.607 18.720 hybrid contribution -0.481 -0.411 2.438 2.518 sum -2.460 14.886 -8.169 17.158 Atomic orbital electron populations 1.22381 0.86020 1.02551 1.01297 1.61918 1.08802 1.14303 1.43720 1.22117 0.94263 0.88926 1.01531 1.21337 0.94378 1.00040 0.97141 1.21408 0.89747 0.98793 1.02425 1.20979 0.90109 0.77000 0.81508 1.90659 1.74813 1.48569 1.32082 1.45991 1.08211 1.55136 1.27354 1.21316 0.79526 0.99724 0.97602 1.23857 0.95029 0.91138 0.99250 0.87642 1.23152 0.96336 0.94713 1.01285 1.23537 0.89535 0.99951 0.99263 1.68906 1.08350 1.09913 1.31389 1.22458 1.00818 0.93379 0.94486 1.20681 0.82618 0.91726 0.82265 1.90519 1.55623 1.49300 1.54952 1.41907 1.49427 1.08039 1.21466 1.19577 1.34687 0.84826 1.07198 0.90562 1.25945 0.95987 1.03440 0.95483 1.69643 1.37615 1.33336 1.15234 0.85067 0.78484 0.77524 0.77765 1.19849 1.19449 1.19852 1.21522 0.95469 0.94588 1.02617 1.22056 0.94161 0.98856 0.91881 0.90465 0.91227 0.95048 0.93755 0.89450 0.90578 0.92506 0.86764 0.75883 0.89996 0.92490 0.87491 0.88649 0.91625 0.92082 0.87494 0.90062 0.76958 0.91288 0.92373 0.90602 0.93601 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.59 127.69 1.22 1.60 16 2 N -0.56 -10.54 4.91 -922.61 -4.53 -15.07 16 3 C 0.06 0.98 5.46 86.32 0.47 1.45 16 4 C -0.09 -1.81 4.68 30.65 0.14 -1.66 16 5 C -0.10 -2.04 2.59 -11.46 -0.03 -2.07 16 6 C 0.52 12.96 7.15 87.65 0.63 13.59 16 7 O -0.58 -18.64 15.98 -3.04 -0.05 -18.69 16 8 N -0.72 -16.00 5.37 -463.06 -2.49 -18.49 16 9 C 0.14 3.08 5.82 86.38 0.50 3.58 16 10 C 0.02 0.34 3.25 42.19 0.14 0.48 16 11 H 0.11 1.75 7.63 -2.39 -0.02 1.73 16 12 C -0.12 -2.29 8.00 30.94 0.25 -2.04 16 13 C 0.01 0.18 6.34 83.58 0.53 0.71 16 14 N -0.46 -13.59 5.74 -906.73 -5.21 -18.80 16 15 C 0.02 0.63 5.09 85.56 0.44 1.06 16 16 C 0.44 19.88 7.46 87.66 0.65 20.53 16 17 O -0.62 -33.29 14.98 -3.08 -0.05 -33.34 16 18 N -0.57 -27.94 5.29 -306.98 -1.62 -29.56 16 19 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 20 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 21 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 22 N -0.92 -47.82 13.05 21.66 0.28 -47.54 16 23 Si 0.99 42.00 29.55 68.60 2.03 44.03 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 C -0.10 -2.19 5.26 30.65 0.16 -2.02 16 28 C 0.06 1.11 5.46 86.33 0.47 1.58 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 31 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 1.26 8.12 -2.39 -0.02 1.24 16 34 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.06 1.40 8.04 -2.39 -0.02 1.38 16 36 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.40 8.29 5.82 -92.71 -0.54 7.75 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.44 7.88 -2.39 -0.02 1.42 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.90 7.94 -2.39 -0.02 1.88 16 42 H 0.07 1.87 7.84 -2.39 -0.02 1.85 16 43 H 0.06 2.14 7.97 -2.39 -0.02 2.12 16 44 H 0.11 2.82 6.56 -2.39 -0.02 2.81 16 45 H 0.08 2.13 7.56 -2.38 -0.02 2.11 16 46 H 0.40 18.23 7.90 -92.71 -0.73 17.50 16 47 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 48 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.08 1.58 7.67 -2.39 -0.02 1.56 16 50 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 Total: -1.00 -71.22 403.38 -5.11 -76.34 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -0.34 Total: 41.91 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 6.86 Total: 19.22 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -13.56 Total: -129.47 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -0.09 Total: -52.03 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -71.22 -5.11 -76.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569374866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.534 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds