Wall clock time and date at job start Tue Mar 31 2020 21:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47462 * 2 1 4 4 N 1.46497 * 109.47105 * 239.99601 * 2 1 3 5 5 C 1.34778 * 120.00114 * 85.00282 * 4 2 1 6 6 N 1.34772 * 120.00319 * 180.02562 * 5 4 2 7 7 O 1.21589 * 119.99780 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.47106 * 119.99924 * 2 1 3 9 9 O 1.21280 * 120.00207 * 107.51795 * 8 2 1 10 10 N 1.34780 * 120.00138 * 287.52435 * 8 2 1 11 11 C 1.46934 * 120.62655 * 355.01686 * 10 8 2 12 12 C 1.53195 * 108.77157 * 233.58865 * 11 10 8 13 13 C 1.53038 * 109.31571 * 305.36381 * 12 11 10 14 14 C 1.52987 * 109.46156 * 181.38898 * 13 12 11 15 15 H 1.08997 * 110.89149 * 302.42786 * 14 13 12 16 16 C 1.55157 * 111.00706 * 66.35040 * 14 13 12 17 17 C 1.54333 * 103.02261 * 153.38162 * 16 14 13 18 18 N 1.47026 * 107.26623 * 338.13956 * 17 16 14 19 19 C 1.36938 * 125.64712 * 178.84965 * 18 17 16 20 20 H 1.07998 * 119.99456 * 210.70782 * 19 18 17 21 21 C 1.38804 * 120.00138 * 30.70184 * 19 18 17 22 22 N 1.31620 * 120.00194 * 211.46454 * 21 19 18 23 23 Si 1.86802 * 120.00135 * 31.46189 * 21 19 18 24 24 H 1.48503 * 109.47073 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47131 * 119.99676 * 23 21 19 26 26 H 1.48497 * 109.47113 * 240.00146 * 23 21 19 27 27 C 1.47423 * 108.69895 * 358.59050 * 18 17 16 28 28 C 1.53047 * 109.53727 * 61.36466 * 13 12 11 29 29 C 1.46920 * 120.63280 * 174.99647 * 10 8 2 30 30 H 1.09007 * 109.47534 * 183.79799 * 1 2 3 31 31 H 1.09004 * 109.47388 * 303.79524 * 1 2 3 32 32 H 1.08998 * 109.47208 * 63.79846 * 1 2 3 33 33 H 0.97003 * 120.00271 * 265.00077 * 4 2 1 34 34 H 0.97005 * 119.99602 * 359.97438 * 6 5 4 35 35 H 0.96995 * 120.00565 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.58502 * 113.80065 * 11 10 8 37 37 H 1.09000 * 109.70506 * 353.44695 * 11 10 8 38 38 H 1.09003 * 109.49413 * 185.41368 * 12 11 10 39 39 H 1.08996 * 109.52537 * 65.33438 * 12 11 10 40 40 H 1.09001 * 109.45804 * 301.36545 * 13 12 11 41 41 H 1.09000 * 110.71968 * 271.93820 * 16 14 13 42 42 H 1.09003 * 110.71974 * 35.21085 * 16 14 13 43 43 H 1.09001 * 109.99323 * 218.66607 * 17 16 14 44 44 H 1.08999 * 109.78270 * 97.50035 * 17 16 14 45 45 H 0.97001 * 119.99677 * 4.88682 * 22 21 19 46 46 H 1.09005 * 110.36471 * 143.19651 * 27 18 17 47 47 H 1.09004 * 110.36269 * 265.40118 * 27 18 17 48 48 H 1.09000 * 109.49303 * 58.58704 * 28 13 12 49 49 H 1.08993 * 109.49889 * 178.68339 * 28 13 12 50 50 H 1.08999 * 109.58667 * 246.19390 * 29 10 8 51 51 H 1.08992 * 109.59037 * 6.62711 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 7 2.5958 -0.6539 -3.4576 7 8 1.8584 1.1615 -2.4117 8 6 2.0323 -0.7104 1.2305 9 8 2.5325 -1.8110 1.1336 10 7 1.9256 -0.1227 2.4387 11 6 1.4226 1.2525 2.5604 12 6 2.4383 2.0804 3.3540 13 6 2.7170 1.3924 4.6923 14 6 3.7047 2.2343 5.5023 15 1 4.6304 2.3879 4.9479 16 6 3.0720 3.5892 5.9161 17 6 3.8426 3.9544 7.2025 18 7 4.3997 2.7072 7.7464 19 6 5.1714 2.6024 8.8728 20 1 5.9191 1.8264 8.9447 21 6 4.9927 3.4935 9.9219 22 7 6.0155 3.8351 10.6767 23 14 3.3008 4.2081 10.2626 24 1 2.3284 3.6693 9.2779 25 1 2.8735 3.8361 11.6353 26 1 3.3554 5.6874 10.1449 27 6 3.9847 1.5876 6.8818 28 6 3.3151 0.0063 4.4404 29 6 2.3095 -0.8451 3.6591 30 1 -0.3634 -1.0254 0.0681 31 1 -0.3634 0.5716 0.8540 32 1 -0.3633 0.4537 -0.9220 33 1 2.2490 -1.6319 -1.1525 34 1 2.8264 -1.5951 -3.4140 35 1 2.6888 -0.1700 -4.2931 36 1 0.4667 1.2469 3.0841 37 1 1.2933 1.6856 1.5686 38 1 2.0341 3.0765 3.5343 39 1 3.3653 2.1612 2.7865 40 1 1.7854 1.2899 5.2489 41 1 3.2299 4.3408 5.1427 42 1 2.0095 3.4698 6.1282 43 1 3.1649 4.4050 7.9276 44 1 4.6491 4.6481 6.9649 45 1 6.9065 3.5205 10.4575 46 1 4.7863 0.8534 6.8011 47 1 3.0814 1.1202 7.2740 48 1 4.2338 0.1062 3.8624 49 1 3.5350 -0.4738 5.3939 50 1 1.4259 -1.0217 4.2724 51 1 2.7672 -1.7974 3.3914 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569434076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:04 Heat of formation + Delta-G solvation = -50.037682 kcal Electronic energy + Delta-G solvation = -30314.298481 eV Core-core repulsion = 26248.770656 eV Total energy + Delta-G solvation = -4065.527826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.05338 -39.92002 -38.65378 -36.90855 -35.39450 -34.18405 -33.83421 -32.22470 -31.55505 -30.37580 -29.46436 -28.16683 -25.76214 -24.69749 -23.42783 -23.11424 -21.70081 -20.81505 -20.20283 -19.71912 -19.63216 -18.84115 -17.77006 -17.44678 -17.07217 -16.18359 -16.00459 -15.38473 -15.25407 -15.06432 -14.92804 -14.62980 -14.23871 -14.15342 -13.79542 -13.71472 -13.48831 -13.10872 -12.92146 -12.74289 -12.64213 -12.50099 -12.20059 -12.13957 -12.07428 -11.44497 -11.30845 -11.17303 -10.93768 -10.80792 -10.72036 -10.61304 -10.24023 -10.23103 -10.11342 -10.07329 -9.89523 -9.51863 -9.49656 -9.22933 -8.92818 -8.35044 -6.90577 -6.33097 -3.29259 2.14404 2.27294 2.76650 2.85999 3.48687 3.54433 3.70468 3.95773 4.07547 4.47507 4.60793 4.64375 4.65755 4.68247 4.71972 4.89057 5.04911 5.10281 5.14395 5.18802 5.26571 5.32094 5.39546 5.43436 5.50718 5.53753 5.66696 5.69838 5.72633 5.80938 5.87649 5.95767 5.99568 6.04018 6.09002 6.24991 6.28858 6.30526 6.33830 6.42692 6.50223 6.61375 6.74744 6.91042 6.91665 7.02251 7.53177 7.73438 7.98899 8.20900 8.41894 9.02217 9.61337 10.38202 11.06331 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026490 B = 0.002157 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.753317 B =12975.397667 C =13170.073544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.114 0.886 4 N -0.729 5.729 5 C 0.709 3.291 6 N -0.866 5.866 7 O -0.595 6.595 8 C 0.514 3.486 9 O -0.543 6.543 10 N -0.601 5.601 11 C 0.100 3.900 12 C -0.130 4.130 13 C -0.074 4.074 14 C -0.096 4.096 15 H 0.073 0.927 16 C -0.125 4.125 17 C 0.123 3.877 18 N -0.604 5.604 19 C -0.339 4.339 20 H 0.064 0.936 21 C 0.001 3.999 22 N -0.904 5.904 23 Si 1.041 2.959 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.294 1.294 27 C 0.134 3.866 28 C -0.129 4.129 29 C 0.111 3.889 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.406 0.594 34 H 0.398 0.602 35 H 0.416 0.584 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.031 0.969 45 H 0.267 0.733 46 H 0.038 0.962 47 H 0.019 0.981 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.070 0.930 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.340 -9.767 -26.179 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 H 0.132 0.868 4 N -0.388 5.388 5 C 0.407 3.593 6 N -0.434 5.434 7 O -0.473 6.473 8 C 0.301 3.699 9 O -0.420 6.420 10 N -0.334 5.334 11 C -0.022 4.022 12 C -0.168 4.168 13 C -0.093 4.093 14 C -0.115 4.115 15 H 0.092 0.908 16 C -0.163 4.163 17 C -0.002 4.002 18 N -0.331 5.331 19 C -0.466 4.466 20 H 0.082 0.918 21 C -0.203 4.203 22 N -0.542 5.542 23 Si 0.871 3.129 24 H -0.204 1.204 25 H -0.226 1.226 26 H -0.221 1.221 27 C 0.009 3.991 28 C -0.168 4.168 29 C -0.010 4.010 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.243 0.757 34 H 0.226 0.774 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.057 0.943 47 H 0.037 0.963 48 H 0.085 0.915 49 H 0.101 0.899 50 H 0.089 0.911 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.116 -8.408 -24.959 29.422 hybrid contribution 1.133 -1.573 -1.191 2.275 sum -11.983 -9.981 -26.150 30.447 Atomic orbital electron populations 1.22169 0.92624 1.03175 1.03911 1.20609 0.95672 0.97730 0.82620 0.86848 1.44812 1.71454 1.14502 1.08001 1.15862 0.77978 0.84849 0.80576 1.42938 1.73390 1.15025 1.12007 1.90981 1.57364 1.14233 1.84688 1.20528 0.78507 0.86196 0.84647 1.90674 1.44784 1.20800 1.85759 1.48056 1.64063 1.15180 1.06124 1.21984 0.97706 0.80857 1.01689 1.21996 0.99395 0.99143 0.96309 1.21101 0.99054 0.94133 0.95024 1.22347 0.97603 0.95086 0.96475 0.90811 1.22608 0.99309 0.96699 0.97650 1.21624 0.95435 0.90591 0.92582 1.44676 1.60480 1.00011 1.27972 1.19800 1.13514 1.19669 0.93666 0.91825 1.26194 1.04194 0.97086 0.92825 1.70860 0.99844 1.40571 1.42887 0.84179 0.77715 0.75812 0.75222 1.20438 1.22575 1.22074 1.21689 0.96731 0.91853 0.88845 1.21988 0.98349 0.95708 1.00707 1.21713 0.98689 0.96228 0.84400 0.91797 0.90631 0.90548 0.75701 0.77388 0.75194 0.90637 0.89513 0.90032 0.91372 0.90802 0.91798 0.91881 0.95507 0.95089 0.92335 0.94341 0.96319 0.91518 0.89919 0.91140 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.23 37.15 0.34 -0.77 16 2 C 0.14 1.23 2.13 -69.09 -0.15 1.08 16 3 H 0.11 1.04 6.20 -51.93 -0.32 0.72 16 4 N -0.73 -6.04 5.02 -59.82 -0.30 -6.34 16 5 C 0.71 6.56 8.80 -86.92 -0.77 5.79 16 6 N -0.87 -4.38 8.88 27.63 0.25 -4.13 16 7 O -0.59 -7.85 16.84 5.29 0.09 -7.76 16 8 C 0.51 5.26 7.00 -10.98 -0.08 5.18 16 9 O -0.54 -7.01 15.26 5.56 0.08 -6.92 16 10 N -0.60 -5.57 2.97 -172.77 -0.51 -6.08 16 11 C 0.10 0.75 5.28 -3.70 -0.02 0.73 16 12 C -0.13 -1.19 5.23 -26.61 -0.14 -1.33 16 13 C -0.07 -0.84 1.66 -90.58 -0.15 -0.99 16 14 C -0.10 -1.45 2.57 -88.48 -0.23 -1.68 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 16 C -0.12 -1.99 5.57 -24.89 -0.14 -2.13 16 17 C 0.12 2.66 6.11 -3.06 -0.02 2.64 16 18 N -0.60 -14.87 2.98 -170.07 -0.51 -15.38 16 19 C -0.34 -9.78 10.24 -15.06 -0.15 -9.93 16 20 H 0.06 1.96 8.06 -52.49 -0.42 1.53 16 21 C 0.00 0.02 5.32 -17.43 -0.09 -0.08 16 22 N -0.90 -28.16 13.70 55.49 0.76 -27.40 16 23 Si 1.04 26.30 26.22 -169.99 -4.46 21.84 16 24 H -0.28 -6.61 6.18 56.52 0.35 -6.26 16 25 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 27 C 0.13 2.64 5.65 -2.53 -0.01 2.63 16 28 C -0.13 -1.42 5.18 -26.61 -0.14 -1.56 16 29 C 0.11 1.10 6.44 -3.71 -0.02 1.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.42 6.64 -51.93 -0.35 0.08 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.41 2.98 7.73 -40.82 -0.32 2.66 16 34 H 0.40 0.94 8.84 -40.82 -0.36 0.58 16 35 H 0.42 1.67 8.93 -40.82 -0.36 1.30 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.54 5.14 -51.93 -0.27 0.28 16 38 H 0.08 0.69 7.45 -51.93 -0.39 0.31 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 41 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 42 H 0.06 0.94 8.01 -51.93 -0.42 0.52 16 43 H 0.03 0.62 3.91 -51.93 -0.20 0.41 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.27 8.22 8.73 -40.82 -0.36 7.86 16 46 H 0.04 0.77 8.02 -51.93 -0.42 0.35 16 47 H 0.02 0.37 8.04 -51.93 -0.42 -0.04 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.08 0.96 7.21 -51.93 -0.37 0.58 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.09 1.00 7.00 -51.93 -0.36 0.64 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -36.23 389.94 -8.89 -45.12 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.40 Total: 0.50 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.76 Total: 0.68 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.31 Total: -59.33 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.17 Total: -14.68 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -4.46 Total: 21.84 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.23 -8.89 -45.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569434076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.915 kcal (2) G-P(sol) polarization free energy of solvation -36.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds