Wall clock time and date at job start Tue Mar 31 2020 21:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47462 * 2 1 4 4 N 1.46497 * 109.47105 * 239.99601 * 2 1 3 5 5 C 1.34778 * 120.00114 * 85.00282 * 4 2 1 6 6 N 1.34772 * 120.00319 * 180.02562 * 5 4 2 7 7 O 1.21589 * 119.99780 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.47106 * 119.99924 * 2 1 3 9 9 O 1.21280 * 120.00207 * 107.51795 * 8 2 1 10 10 N 1.34780 * 120.00138 * 287.52435 * 8 2 1 11 11 C 1.46934 * 120.62655 * 355.01686 * 10 8 2 12 12 C 1.53195 * 108.77157 * 233.58865 * 11 10 8 13 13 C 1.53038 * 109.31571 * 305.36381 * 12 11 10 14 14 C 1.52987 * 109.46156 * 181.38898 * 13 12 11 15 15 H 1.08997 * 110.89149 * 302.42786 * 14 13 12 16 16 C 1.55157 * 111.00706 * 66.35040 * 14 13 12 17 17 C 1.54333 * 103.02261 * 153.38162 * 16 14 13 18 18 N 1.47026 * 107.26623 * 338.13956 * 17 16 14 19 19 C 1.36938 * 125.64712 * 178.84965 * 18 17 16 20 20 H 1.07998 * 119.99456 * 210.70782 * 19 18 17 21 21 C 1.38804 * 120.00138 * 30.70184 * 19 18 17 22 22 N 1.31620 * 120.00194 * 211.46454 * 21 19 18 23 23 Si 1.86802 * 120.00135 * 31.46189 * 21 19 18 24 24 H 1.48503 * 109.47073 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47131 * 119.99676 * 23 21 19 26 26 H 1.48497 * 109.47113 * 240.00146 * 23 21 19 27 27 C 1.47423 * 108.69895 * 358.59050 * 18 17 16 28 28 C 1.53047 * 109.53727 * 61.36466 * 13 12 11 29 29 C 1.46920 * 120.63280 * 174.99647 * 10 8 2 30 30 H 1.09007 * 109.47534 * 183.79799 * 1 2 3 31 31 H 1.09004 * 109.47388 * 303.79524 * 1 2 3 32 32 H 1.08998 * 109.47208 * 63.79846 * 1 2 3 33 33 H 0.97003 * 120.00271 * 265.00077 * 4 2 1 34 34 H 0.97005 * 119.99602 * 359.97438 * 6 5 4 35 35 H 0.96995 * 120.00565 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.58502 * 113.80065 * 11 10 8 37 37 H 1.09000 * 109.70506 * 353.44695 * 11 10 8 38 38 H 1.09003 * 109.49413 * 185.41368 * 12 11 10 39 39 H 1.08996 * 109.52537 * 65.33438 * 12 11 10 40 40 H 1.09001 * 109.45804 * 301.36545 * 13 12 11 41 41 H 1.09000 * 110.71968 * 271.93820 * 16 14 13 42 42 H 1.09003 * 110.71974 * 35.21085 * 16 14 13 43 43 H 1.09001 * 109.99323 * 218.66607 * 17 16 14 44 44 H 1.08999 * 109.78270 * 97.50035 * 17 16 14 45 45 H 0.97001 * 119.99677 * 4.88682 * 22 21 19 46 46 H 1.09005 * 110.36471 * 143.19651 * 27 18 17 47 47 H 1.09004 * 110.36269 * 265.40118 * 27 18 17 48 48 H 1.09000 * 109.49303 * 58.58704 * 28 13 12 49 49 H 1.08993 * 109.49889 * 178.68339 * 28 13 12 50 50 H 1.08999 * 109.58667 * 246.19390 * 29 10 8 51 51 H 1.08992 * 109.59037 * 6.62711 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 7 2.5958 -0.6539 -3.4576 7 8 1.8584 1.1615 -2.4117 8 6 2.0323 -0.7104 1.2305 9 8 2.5325 -1.8110 1.1336 10 7 1.9256 -0.1227 2.4387 11 6 1.4226 1.2525 2.5604 12 6 2.4383 2.0804 3.3540 13 6 2.7170 1.3924 4.6923 14 6 3.7047 2.2343 5.5023 15 1 4.6304 2.3879 4.9479 16 6 3.0720 3.5892 5.9161 17 6 3.8426 3.9544 7.2025 18 7 4.3997 2.7072 7.7464 19 6 5.1714 2.6024 8.8728 20 1 5.9191 1.8264 8.9447 21 6 4.9927 3.4935 9.9219 22 7 6.0155 3.8351 10.6767 23 14 3.3008 4.2081 10.2626 24 1 2.3284 3.6693 9.2779 25 1 2.8735 3.8361 11.6353 26 1 3.3554 5.6874 10.1449 27 6 3.9847 1.5876 6.8818 28 6 3.3151 0.0063 4.4404 29 6 2.3095 -0.8451 3.6591 30 1 -0.3634 -1.0254 0.0681 31 1 -0.3634 0.5716 0.8540 32 1 -0.3633 0.4537 -0.9220 33 1 2.2490 -1.6319 -1.1525 34 1 2.8264 -1.5951 -3.4140 35 1 2.6888 -0.1700 -4.2931 36 1 0.4667 1.2469 3.0841 37 1 1.2933 1.6856 1.5686 38 1 2.0341 3.0765 3.5343 39 1 3.3653 2.1612 2.7865 40 1 1.7854 1.2899 5.2489 41 1 3.2299 4.3408 5.1427 42 1 2.0095 3.4698 6.1282 43 1 3.1649 4.4050 7.9276 44 1 4.6491 4.6481 6.9649 45 1 6.9065 3.5205 10.4575 46 1 4.7863 0.8534 6.8011 47 1 3.0814 1.1202 7.2740 48 1 4.2338 0.1062 3.8624 49 1 3.5350 -0.4738 5.3939 50 1 1.4259 -1.0217 4.2724 51 1 2.7672 -1.7974 3.3914 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569434076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:03 Heat of formation + Delta-G solvation = -78.403091 kcal Electronic energy + Delta-G solvation = -30315.528498 eV Core-core repulsion = 26248.770656 eV Total energy + Delta-G solvation = -4066.757842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.79660 -40.68913 -39.82146 -38.09065 -36.10645 -35.35262 -34.72766 -33.90567 -32.38430 -31.18802 -30.90426 -29.52399 -26.88824 -25.81071 -24.49668 -24.20123 -22.49137 -21.98463 -21.65635 -20.88812 -20.39695 -19.54716 -19.50593 -18.37887 -17.84563 -16.89225 -16.82529 -16.75486 -16.63850 -16.00355 -15.77361 -15.51740 -15.36213 -15.14079 -14.91587 -14.84797 -14.63818 -14.32371 -14.18573 -13.85672 -13.61224 -13.49079 -13.33274 -13.17239 -12.98077 -12.72371 -12.68009 -12.37080 -12.23364 -12.10914 -12.00894 -11.58074 -11.52206 -11.49739 -11.34793 -11.15550 -11.00441 -10.83300 -10.70784 -10.55864 -10.13812 -9.69002 -9.03245 -8.59547 -5.54844 1.40475 1.44102 1.52636 1.60268 1.73158 2.10025 2.18853 2.54572 2.95094 3.27582 3.47374 3.58841 3.65489 3.78169 3.84872 4.00994 4.06403 4.09052 4.13950 4.27339 4.35461 4.43412 4.46689 4.55845 4.57345 4.67311 4.74140 4.78632 4.84703 4.87964 4.93252 4.96913 5.01275 5.06023 5.09820 5.17737 5.19282 5.26587 5.31465 5.35872 5.41502 5.54621 5.62928 5.74876 5.81479 6.02089 6.19062 6.30200 6.82895 6.95274 7.01817 7.50926 7.59989 8.23239 8.74454 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026490 B = 0.002157 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.753317 B =12975.397667 C =13170.073544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.111 0.889 4 N -0.727 5.727 5 C 0.704 3.296 6 N -0.847 5.847 7 O -0.636 6.636 8 C 0.514 3.486 9 O -0.575 6.575 10 N -0.599 5.599 11 C 0.099 3.901 12 C -0.126 4.126 13 C -0.065 4.065 14 C -0.080 4.080 15 H 0.064 0.936 16 C -0.110 4.110 17 C 0.109 3.891 18 N -0.627 5.627 19 C -0.336 4.336 20 H 0.024 0.976 21 C -0.055 4.055 22 N -0.938 5.938 23 Si 1.091 2.909 24 H -0.251 1.251 25 H -0.296 1.296 26 H -0.285 1.285 27 C 0.130 3.870 28 C -0.126 4.126 29 C 0.117 3.883 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.411 0.589 34 H 0.413 0.587 35 H 0.422 0.578 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.023 0.977 44 H 0.013 0.987 45 H 0.252 0.748 46 H 0.022 0.978 47 H 0.028 0.972 48 H 0.051 0.949 49 H 0.071 0.929 50 H 0.088 0.912 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.742 -9.389 -28.353 33.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.035 3.965 3 H 0.128 0.872 4 N -0.385 5.385 5 C 0.402 3.598 6 N -0.416 5.416 7 O -0.518 6.518 8 C 0.301 3.699 9 O -0.455 6.455 10 N -0.331 5.331 11 C -0.022 4.022 12 C -0.164 4.164 13 C -0.083 4.083 14 C -0.099 4.099 15 H 0.082 0.918 16 C -0.148 4.148 17 C -0.015 4.015 18 N -0.354 5.354 19 C -0.465 4.465 20 H 0.041 0.959 21 C -0.252 4.252 22 N -0.578 5.578 23 Si 0.915 3.085 24 H -0.176 1.176 25 H -0.224 1.224 26 H -0.212 1.212 27 C 0.005 3.995 28 C -0.164 4.164 29 C -0.005 4.005 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.248 0.752 34 H 0.243 0.757 35 H 0.256 0.744 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.040 0.960 44 H 0.031 0.969 45 H 0.061 0.939 46 H 0.041 0.959 47 H 0.046 0.954 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.107 0.893 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.522 -8.072 -27.183 32.818 hybrid contribution 2.348 -1.794 -0.551 3.006 sum -14.174 -9.865 -27.733 32.671 Atomic orbital electron populations 1.22124 0.91108 1.03501 1.04372 1.20638 0.96738 0.97163 0.81912 0.87172 1.44792 1.71226 1.14642 1.07816 1.16054 0.77944 0.84445 0.81337 1.42785 1.71918 1.15749 1.11187 1.90947 1.59354 1.16080 1.85416 1.20804 0.77966 0.85836 0.85258 1.90662 1.46290 1.22307 1.86247 1.48126 1.63518 1.15887 1.05574 1.22173 0.97984 0.79322 1.02744 1.21965 0.99671 1.00039 0.94741 1.21032 0.98113 0.93326 0.95878 1.22230 0.98497 0.95144 0.94078 0.91755 1.22607 0.99616 0.97326 0.95238 1.21847 0.95351 0.89081 0.95233 1.44819 1.60399 1.02918 1.27272 1.19649 1.13004 1.18254 0.95598 0.95858 1.27436 1.06781 0.98123 0.92867 1.70974 0.99715 1.42689 1.44443 0.83526 0.73629 0.75683 0.75662 1.17582 1.22391 1.21178 1.21858 0.96319 0.90629 0.90686 1.21912 0.98233 0.96082 1.00159 1.21611 0.98881 0.95353 0.84694 0.91724 0.88771 0.91228 0.75157 0.75655 0.74409 0.88206 0.87918 0.88240 0.92371 0.89482 0.88676 0.89478 0.95976 0.96891 0.93929 0.95915 0.95400 0.92997 0.91010 0.89348 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.23 71.98 0.66 -1.06 16 2 C 0.14 2.20 2.13 44.24 0.09 2.30 16 3 H 0.11 1.78 6.20 -2.39 -0.01 1.77 16 4 N -0.73 -11.02 5.02 -461.43 -2.32 -13.33 16 5 C 0.70 12.12 8.80 179.06 1.58 13.69 16 6 N -0.85 -7.24 8.88 -184.75 -1.64 -8.88 16 7 O -0.64 -16.17 16.84 -4.00 -0.07 -16.23 16 8 C 0.51 9.53 7.00 87.66 0.61 10.14 16 9 O -0.57 -14.28 15.26 -3.03 -0.05 -14.33 16 10 N -0.60 -9.43 2.97 -818.89 -2.43 -11.86 16 11 C 0.10 1.06 5.28 86.36 0.46 1.51 16 12 C -0.13 -1.77 5.23 30.67 0.16 -1.61 16 13 C -0.06 -1.24 1.66 -10.77 -0.02 -1.26 16 14 C -0.08 -2.24 2.57 -9.41 -0.02 -2.26 16 15 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 16 C -0.11 -3.07 5.57 31.79 0.18 -2.90 16 17 C 0.11 4.56 6.11 86.73 0.53 5.09 16 18 N -0.63 -30.85 2.98 -691.97 -2.06 -32.91 16 19 C -0.34 -20.05 10.24 84.03 0.86 -19.19 16 20 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 21 C -0.05 -3.31 5.32 84.86 0.45 -2.86 16 22 N -0.94 -60.57 13.70 21.65 0.30 -60.28 16 23 Si 1.09 53.03 26.22 68.60 1.80 54.83 16 24 H -0.25 -10.98 6.18 99.48 0.62 -10.37 16 25 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 27 C 0.13 5.01 5.65 86.85 0.49 5.50 16 28 C -0.13 -2.56 5.18 30.67 0.16 -2.40 16 29 C 0.12 2.05 6.44 86.36 0.56 2.60 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.09 0.69 6.64 -2.39 -0.02 0.68 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.41 5.50 7.73 -92.71 -0.72 4.79 16 34 H 0.41 1.19 8.84 -92.70 -0.82 0.37 16 35 H 0.42 2.73 8.93 -92.71 -0.83 1.90 16 36 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.10 0.84 5.14 -2.39 -0.01 0.83 16 38 H 0.10 1.12 7.45 -2.39 -0.02 1.10 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.53 8.11 -2.39 -0.02 1.51 16 41 H 0.09 2.12 8.11 -2.39 -0.02 2.10 16 42 H 0.09 2.08 8.01 -2.39 -0.02 2.06 16 43 H 0.02 0.96 3.91 -2.39 -0.01 0.95 16 44 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.25 16.40 8.73 -92.71 -0.81 15.59 16 46 H 0.02 0.93 8.02 -2.38 -0.02 0.91 16 47 H 0.03 1.05 8.04 -2.38 -0.02 1.03 16 48 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.07 1.61 7.21 -2.39 -0.02 1.59 16 50 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.08 1.62 7.00 -2.39 -0.02 1.60 16 Total: -1.00 -82.57 389.94 -1.25 -83.82 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -1.52 Total: 11.86 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 6.75 Total: 7.31 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -8.16 Total: -127.26 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.11 Total: -30.56 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 1.80 Total: 54.83 kcal Total: -82.57 -1.25 -83.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569434076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.417 kcal (2) G-P(sol) polarization free energy of solvation -82.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds