Wall clock time and date at job start Tue Mar 31 2020 21:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47319 * 2 1 4 4 C 1.53005 * 109.47022 * 239.99766 * 2 1 3 5 5 N 1.46500 * 109.47280 * 294.78133 * 4 2 1 6 6 C 1.34771 * 120.00193 * 175.01850 * 5 4 2 7 7 O 1.21290 * 119.99711 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00512 * 179.97438 * 6 5 4 9 9 C 1.56239 * 116.68981 * 297.58080 * 8 6 5 10 10 C 1.55910 * 102.63603 * 199.96451 * 9 8 6 11 11 N 1.49525 * 105.39172 * 0.46739 * 10 9 8 12 12 C 1.49519 * 105.92362 * 287.97096 * 11 10 9 13 13 C 1.54656 * 105.28499 * 71.26033 * 12 11 10 14 14 C 1.50461 * 102.03431 * 34.38419 * 11 10 9 15 15 N 1.46903 * 109.46774 * 120.00230 * 2 1 3 16 16 C 1.46904 * 110.99514 * 175.35551 * 15 2 1 17 17 C 1.46899 * 110.99970 * 299.30534 * 15 2 1 18 18 C 1.50701 * 109.46913 * 170.00452 * 17 15 2 19 19 O 1.21288 * 120.00400 * 0.27550 * 18 17 15 20 20 N 1.34777 * 119.99575 * 179.97438 * 18 17 15 21 21 C 1.37101 * 119.99956 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00041 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00404 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99780 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00124 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47228 * 89.99925 * 25 23 21 27 27 H 1.48507 * 109.46752 * 209.99804 * 25 23 21 28 28 H 1.48491 * 109.47212 * 329.99578 * 25 23 21 29 29 H 1.09000 * 109.47221 * 299.99966 * 1 2 3 30 30 H 1.08994 * 109.47060 * 60.00213 * 1 2 3 31 31 H 1.09007 * 109.47180 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46776 * 54.77967 * 4 2 1 33 33 H 1.08996 * 109.47136 * 174.78135 * 4 2 1 34 34 H 0.97001 * 120.00177 * 355.01650 * 5 4 2 35 35 H 1.09000 * 110.66805 * 319.46710 * 9 8 6 36 36 H 1.08999 * 110.67280 * 82.60990 * 9 8 6 37 37 H 1.08999 * 110.88073 * 241.14445 * 10 9 8 38 38 H 1.09001 * 109.58544 * 119.12257 * 10 9 8 39 39 H 1.09000 * 110.28089 * 190.21515 * 12 11 10 40 40 H 1.08997 * 110.28252 * 312.30465 * 12 11 10 41 41 H 1.08996 * 110.66921 * 242.22926 * 13 12 11 42 42 H 1.08999 * 110.67082 * 119.08480 * 13 12 11 43 43 H 1.08996 * 111.91110 * 188.40115 * 14 11 10 44 44 H 1.09003 * 111.97381 * 62.20986 * 14 11 10 45 45 H 1.09006 * 109.47079 * 177.41044 * 16 15 2 46 46 H 1.09004 * 109.47110 * 297.40648 * 16 15 2 47 47 H 1.08993 * 109.47410 * 57.40575 * 16 15 2 48 48 H 1.08990 * 109.47193 * 50.00290 * 17 15 2 49 49 H 1.09004 * 109.47010 * 290.00005 * 17 15 2 50 50 H 0.97002 * 120.00563 * 0.02562 * 20 18 17 51 51 H 0.97006 * 120.00274 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6570 -2.1340 -1.1881 6 6 1.9126 -2.9474 -2.2318 7 8 2.4602 -2.5098 -3.2217 8 6 1.5191 -4.4007 -2.1687 9 6 2.2001 -5.2646 -1.0592 10 6 2.0023 -6.7176 -1.5888 11 7 1.2772 -6.5711 -2.8883 12 6 -0.1187 -6.1673 -2.5359 13 6 -0.0066 -4.7093 -2.0324 14 6 1.8496 -5.2868 -3.4238 15 7 2.0196 -0.6926 1.1995 16 6 3.4839 -0.8091 1.1791 17 6 1.5622 -0.0170 2.4210 18 6 1.8698 -0.8800 3.6175 19 8 2.4208 -1.9501 3.4680 20 7 1.5381 -0.4599 4.8545 21 6 1.8174 -1.2452 5.9430 22 1 2.3037 -2.2003 5.8094 23 6 1.4750 -0.8125 7.2182 24 7 0.8828 0.3494 7.3808 25 14 1.8562 -1.8822 8.7013 26 1 3.2067 -1.5465 9.2198 27 1 0.8445 -1.6382 9.7608 28 1 1.8204 -3.3121 8.3026 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6023 -0.2643 -2.1368 33 1 3.1260 -0.6411 -1.2972 34 1 1.2194 -2.4841 -0.3963 35 1 3.2551 -5.0072 -0.9646 36 1 1.6859 -5.1417 -0.1060 37 1 1.4099 -7.3084 -0.8902 38 1 2.9745 -7.1836 -1.7491 39 1 -0.7594 -6.2148 -3.4164 40 1 -0.5103 -6.8102 -1.7477 41 1 -0.3223 -4.6363 -0.9918 42 1 -0.5923 -4.0390 -2.6614 43 1 1.3204 -4.9454 -4.3134 44 1 2.9230 -5.3602 -3.5985 45 1 3.8234 -1.2844 2.0995 46 1 3.7885 -1.4132 0.3245 47 1 3.9263 0.1837 1.0983 48 1 0.4871 0.1522 2.3618 49 1 2.0756 0.9394 2.5212 50 1 1.1010 0.3977 4.9745 51 1 0.6441 0.6517 8.2711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570747879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:32 Heat of formation + Delta-G solvation = -61.444158 kcal Electronic energy + Delta-G solvation = -30663.096404 eV Core-core repulsion = 26597.073957 eV Total energy + Delta-G solvation = -4066.022448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.11177 -40.67067 -39.92379 -38.55801 -35.99054 -35.23571 -33.24485 -32.52392 -31.61485 -31.39577 -29.81389 -29.04972 -27.46560 -26.41831 -25.18389 -23.49603 -23.48565 -21.72607 -21.29398 -20.64512 -20.33297 -19.79083 -18.15839 -17.82233 -17.23151 -17.13383 -16.75375 -16.57185 -16.28684 -16.18213 -15.88799 -15.58834 -15.32541 -15.22127 -14.89142 -14.43726 -14.23939 -13.82411 -13.78283 -13.72050 -13.57293 -13.36123 -13.15178 -13.11316 -12.94455 -12.73845 -12.70722 -12.43170 -12.41763 -12.34507 -12.29654 -12.25951 -12.11893 -11.74748 -11.61785 -11.42733 -11.27156 -10.88914 -10.23497 -10.06838 -10.04504 -9.96592 -9.24059 -8.44468 -5.92236 1.38549 1.42693 1.52169 1.54619 2.09862 2.16103 2.29517 2.73403 2.81949 3.23048 3.41881 3.46606 3.47044 3.69796 3.78961 3.94512 4.00816 4.03680 4.14599 4.20300 4.29360 4.32908 4.40074 4.47268 4.52527 4.53245 4.57708 4.61523 4.63920 4.71576 4.77593 4.78581 4.84370 4.91779 4.92813 4.93838 5.01269 5.02352 5.11664 5.18483 5.34838 5.43010 5.44447 5.48118 5.66005 5.87654 6.07041 6.18627 6.55753 6.63790 7.16404 7.20327 7.60924 8.16565 8.72986 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.002702 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.640841 B =10360.155972 C =11667.021877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 H 0.071 0.929 4 C 0.130 3.870 5 N -0.700 5.700 6 C 0.548 3.452 7 O -0.581 6.581 8 C -0.132 4.132 9 C -0.131 4.131 10 C 0.016 3.984 11 N -0.474 5.474 12 C 0.014 3.986 13 C -0.128 4.128 14 C 0.041 3.959 15 N -0.522 5.522 16 C 0.028 3.972 17 C 0.054 3.946 18 C 0.444 3.556 19 O -0.611 6.611 20 N -0.577 5.577 21 C -0.328 4.328 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.989 3.011 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.414 0.586 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.029 0.971 48 H 0.116 0.884 49 H 0.064 0.936 50 H 0.395 0.605 51 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.745 -4.186 -18.167 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 H 0.088 0.912 4 C 0.006 3.994 5 N -0.351 5.351 6 C 0.334 3.666 7 O -0.462 6.462 8 C -0.137 4.137 9 C -0.170 4.170 10 C -0.113 4.113 11 N -0.194 5.194 12 C -0.115 4.115 13 C -0.167 4.167 14 C -0.088 4.088 15 N -0.247 5.247 16 C -0.120 4.120 17 C -0.077 4.077 18 C 0.232 3.768 19 O -0.496 6.496 20 N -0.214 5.214 21 C -0.457 4.457 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.251 0.749 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.047 0.953 48 H 0.134 0.866 49 H 0.082 0.918 50 H 0.228 0.772 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.235 -5.591 -19.225 20.281 hybrid contribution 0.334 1.586 2.053 2.615 sum -2.901 -4.005 -17.172 17.870 Atomic orbital electron populations 1.21910 0.92529 1.02834 1.03011 1.22024 0.97240 0.96302 0.88270 0.91165 1.21425 0.99655 0.80896 0.97441 1.45870 1.60599 1.09875 1.18753 1.19742 0.77605 0.86951 0.82253 1.90673 1.44556 1.77388 1.33556 1.23707 0.99079 0.91392 0.99532 1.23377 1.00848 0.95284 0.97478 1.23855 1.00687 0.95313 0.91470 1.69981 1.03280 1.27937 1.18207 1.23671 0.91822 0.93960 1.02012 1.23182 0.91924 0.98411 1.03172 1.24266 1.01049 0.87547 0.95954 1.61575 1.11336 1.51344 1.00479 1.22387 0.87099 0.99715 1.02772 1.21812 1.03112 0.94596 0.88171 1.20740 0.83188 0.88287 0.84629 1.90467 1.47482 1.25704 1.85983 1.41941 1.54101 1.20305 1.05070 1.19625 1.37998 1.02503 0.85614 0.90277 1.25973 0.96431 0.97807 1.01063 1.69668 1.41432 1.20368 1.24872 0.84983 0.78161 0.78239 0.77325 1.19911 1.19750 1.19674 0.91723 0.90127 0.92246 0.89955 0.92423 0.74934 0.91628 0.90201 0.88852 0.89627 0.88883 0.89015 0.89657 0.90427 0.89325 0.90059 0.92427 0.91308 0.95293 0.86640 0.91768 0.77150 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.88 71.98 0.64 -1.85 16 2 C 0.07 1.39 2.34 44.92 0.11 1.50 16 3 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.13 2.72 4.59 86.38 0.40 3.11 16 5 N -0.70 -15.53 5.05 -463.05 -2.34 -17.87 16 6 C 0.55 13.55 7.29 87.66 0.64 14.19 16 7 O -0.58 -18.21 16.56 -3.06 -0.05 -18.26 16 8 C -0.13 -2.66 1.37 -49.21 -0.07 -2.73 16 9 C -0.13 -2.57 6.13 32.73 0.20 -2.37 16 10 C 0.02 0.27 6.64 86.80 0.58 0.84 16 11 N -0.47 -8.72 6.94 -853.86 -5.93 -14.65 16 12 C 0.01 0.21 6.61 86.36 0.57 0.78 16 13 C -0.13 -2.03 6.05 32.29 0.20 -1.83 16 14 C 0.04 0.84 6.05 87.06 0.53 1.37 16 15 N -0.52 -14.37 3.73 -901.60 -3.37 -17.74 16 16 C 0.03 0.84 8.66 127.69 1.11 1.95 16 17 C 0.05 1.67 5.27 85.56 0.45 2.12 16 18 C 0.44 19.65 7.46 87.66 0.65 20.30 16 19 O -0.61 -31.28 13.92 -3.05 -0.04 -31.32 16 20 N -0.58 -28.20 5.29 -306.99 -1.62 -29.82 16 21 C -0.33 -17.97 9.68 84.04 0.81 -17.16 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 25 Si 0.99 42.02 29.55 68.60 2.03 44.05 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H 0.06 1.12 6.21 -2.39 -0.01 1.10 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.09 7.31 -2.38 -0.02 1.07 16 32 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.06 1.33 6.71 -2.39 -0.02 1.31 16 34 H 0.41 9.31 7.42 -92.71 -0.69 8.63 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.59 7.86 -2.39 -0.02 1.57 16 37 H 0.09 1.39 7.69 -2.39 -0.02 1.37 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.17 7.69 -2.39 -0.02 1.15 16 41 H 0.08 1.28 7.86 -2.39 -0.02 1.26 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.06 2.20 5.79 -2.38 -0.01 2.18 16 46 H 0.07 1.93 6.48 -2.39 -0.02 1.91 16 47 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.12 3.09 5.85 -2.39 -0.01 3.07 16 49 H 0.06 1.82 8.12 -2.38 -0.02 1.80 16 50 H 0.39 18.43 7.90 -92.71 -0.73 17.70 16 51 H 0.28 13.72 8.31 -92.70 -0.77 12.95 16 Total: -1.00 -66.55 397.71 -4.23 -70.78 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: -0.47 Total: 43.26 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 7.27 Total: 20.00 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -12.97 Total: -128.51 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.09 Total: -49.59 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -66.55 -4.23 -70.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570747879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.336 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds