Wall clock time and date at job start Tue Mar 31 2020 20:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00129 * 2 1 4 4 C 1.53002 * 109.47491 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.46998 * 64.99842 * 4 3 2 6 6 C 1.42895 * 113.99720 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46745 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46932 * 180.02562 * 7 6 5 9 9 C 1.36742 * 127.13708 * 85.76357 * 8 7 6 10 10 C 1.50703 * 126.34864 * 359.93362 * 9 8 7 11 11 C 1.52995 * 117.49765 * 188.74917 * 10 9 8 12 12 C 1.53004 * 117.49307 * 120.09024 * 10 9 8 13 13 N 1.30303 * 107.30364 * 179.97438 * 9 8 7 14 14 N 1.28525 * 110.05454 * 359.97438 * 13 9 8 15 15 C 1.31222 * 109.85933 * 359.74995 * 14 13 9 16 16 N 1.38577 * 126.47108 * 180.25673 * 15 14 13 17 17 C 1.46897 * 110.99991 * 71.85807 * 16 15 14 18 18 C 1.46902 * 111.00221 * 307.90296 * 16 15 14 19 19 H 1.08993 * 109.46717 * 59.99925 * 18 16 15 20 20 C 1.52999 * 109.46899 * 300.00001 * 18 16 15 21 21 C 1.50700 * 109.47111 * 180.02562 * 18 16 15 22 22 H 1.08004 * 119.99905 * 0.02562 * 21 18 16 23 23 C 1.37872 * 119.99750 * 179.97438 * 21 18 16 24 24 N 1.31517 * 120.00532 * 0.02562 * 23 21 18 25 25 Si 1.86799 * 119.99992 * 180.02562 * 23 21 18 26 26 H 1.48496 * 109.47245 * 59.99660 * 25 23 21 27 27 H 1.48498 * 109.47434 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47006 * 300.00300 * 25 23 21 29 29 H 1.08999 * 109.47039 * 59.99654 * 1 2 3 30 30 H 1.09000 * 109.47425 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47206 * 300.00082 * 1 2 3 32 32 H 1.09000 * 109.46678 * 60.00109 * 3 2 1 33 33 H 1.09000 * 109.47358 * 300.00157 * 3 2 1 34 34 H 1.09001 * 109.46912 * 305.00676 * 4 3 2 35 35 H 1.08996 * 109.47404 * 185.00284 * 4 3 2 36 36 H 1.08994 * 109.47211 * 60.00631 * 6 5 4 37 37 H 1.09000 * 109.47106 * 300.00063 * 6 5 4 38 38 H 1.08994 * 109.47254 * 60.00041 * 7 6 5 39 39 H 1.09000 * 109.46866 * 299.99593 * 7 6 5 40 40 H 1.08994 * 115.55064 * 334.42851 * 10 9 8 41 41 H 1.09003 * 117.50446 * 0.02562 * 11 10 9 42 42 H 1.09003 * 117.49665 * 145.02836 * 11 10 9 43 43 H 1.09000 * 117.49336 * 214.98048 * 12 10 9 44 44 H 1.08996 * 117.50258 * 359.97438 * 12 10 9 45 45 H 1.09003 * 109.47392 * 53.76432 * 17 16 15 46 46 H 1.09002 * 109.47161 * 173.76044 * 17 16 15 47 47 H 1.08998 * 109.47270 * 293.76054 * 17 16 15 48 48 H 1.09008 * 109.47039 * 60.00109 * 20 18 16 49 49 H 1.09001 * 109.46789 * 179.97438 * 20 18 16 50 50 H 1.09001 * 109.47576 * 300.00154 * 20 18 16 51 51 H 0.96998 * 120.00565 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3811 0.4192 -1.3246 7 6 5.7245 -0.2339 -2.6649 8 7 7.1764 -0.3990 -2.7699 9 6 7.9250 -1.4413 -2.2976 10 6 7.4085 -2.6505 -1.5614 11 6 8.4409 -3.5958 -0.9438 12 6 7.6617 -4.0220 -2.1906 13 7 9.1679 -1.1947 -2.6014 14 7 9.2547 -0.0765 -3.2291 15 6 8.0613 0.4521 -3.3652 16 7 7.7577 1.6503 -3.9918 17 6 7.9062 1.5348 -5.4487 18 6 8.5831 2.7447 -3.4636 19 1 9.6361 2.5193 -3.6319 20 6 8.3277 2.8974 -1.9628 21 6 8.2250 4.0285 -4.1669 22 1 7.4603 4.0312 -4.9296 23 6 8.8727 5.1997 -3.8358 24 7 9.8035 5.1965 -2.9067 25 14 8.4284 6.7912 -4.7070 26 1 6.9936 7.0974 -4.4772 27 1 9.2619 7.8977 -4.1723 28 1 8.6757 6.6438 -6.1638 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5681 0.8409 35 1 3.9786 2.1765 0.0890 36 1 5.7350 -0.2134 -0.5106 37 1 5.8628 1.3950 -1.2623 38 1 5.3707 0.3989 -3.4787 39 1 5.2428 -1.2097 -2.7276 40 1 6.4709 -2.5087 -1.0240 41 1 9.4937 -3.3429 -1.0696 42 1 8.1822 -4.0763 -0.0002 43 1 6.8908 -4.7826 -2.0666 44 1 8.2014 -4.0496 -3.1371 45 1 7.3162 0.6918 -5.8084 46 1 7.5567 2.4517 -5.9233 47 1 8.9558 1.3753 -5.6954 48 1 8.5865 1.9689 -1.4538 49 1 8.9405 3.7092 -1.5709 50 1 7.2746 3.1228 -1.7945 51 1 10.2595 6.0204 -2.6740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001620078014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:43 Heat of formation + Delta-G solvation = 31.658032 kcal Electronic energy + Delta-G solvation = -30680.367560 eV Core-core repulsion = 26618.382326 eV Total energy + Delta-G solvation = -4061.985234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.55238 -38.67538 -37.48795 -37.46671 -36.63548 -34.86119 -32.88753 -30.94454 -29.55692 -29.06479 -28.69025 -26.48891 -25.65364 -24.43330 -23.95658 -23.26375 -22.75995 -22.43420 -21.55572 -19.95837 -19.24196 -17.40382 -17.03595 -16.67671 -16.46626 -16.04537 -15.84367 -15.60789 -15.41315 -15.26085 -14.96851 -14.60140 -14.37002 -13.95759 -13.62359 -13.47612 -13.20001 -12.67104 -12.40346 -12.26616 -12.13094 -11.89831 -11.72907 -11.58176 -11.48447 -11.26297 -11.14359 -11.11781 -10.96614 -10.86487 -10.80131 -10.62932 -10.34441 -10.28476 -10.11739 -10.00351 -9.96452 -9.76229 -9.70754 -9.10996 -8.52774 -8.34610 -7.70556 -6.08137 -4.15020 2.05162 2.50422 3.23842 3.28206 3.33185 3.34850 3.49658 3.58406 3.90006 4.31036 4.39900 4.64231 4.65007 4.73961 4.80515 4.86196 4.88416 4.95715 5.00440 5.07386 5.08565 5.22581 5.23880 5.28475 5.30412 5.40970 5.46032 5.55753 5.56858 5.62159 5.72308 5.77748 5.85263 6.03026 6.12876 6.23547 6.31664 6.45086 6.59311 6.74072 6.83346 6.87697 6.93456 7.01475 7.14119 7.38627 7.63789 7.73033 7.90618 8.16970 8.44419 8.88233 9.24763 9.49823 10.98690 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007214 B = 0.004072 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3880.301531 B = 6874.103896 C = 9939.139307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.063 3.937 4 C 0.066 3.934 5 O -0.376 6.376 6 C 0.051 3.949 7 C 0.122 3.878 8 N -0.468 5.468 9 C 0.189 3.811 10 C -0.080 4.080 11 C -0.150 4.150 12 C -0.160 4.160 13 N -0.287 5.287 14 N -0.316 5.316 15 C 0.385 3.615 16 N -0.473 5.473 17 C 0.050 3.950 18 C 0.227 3.773 19 H 0.023 0.977 20 C -0.129 4.129 21 C -0.513 4.513 22 H 0.066 0.934 23 C 0.063 3.937 24 N -0.888 5.888 25 Si 0.901 3.099 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.043 0.957 46 H 0.090 0.910 47 H 0.034 0.966 48 H 0.002 0.998 49 H 0.092 0.908 50 H 0.030 0.970 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.242 -13.001 6.064 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.013 4.013 4 C -0.011 4.011 5 O -0.294 6.294 6 C -0.027 4.027 7 C -0.002 4.002 8 N -0.163 5.163 9 C -0.077 4.077 10 C -0.101 4.101 11 C -0.188 4.188 12 C -0.199 4.199 13 N -0.127 5.127 14 N -0.158 5.158 15 C 0.030 3.970 16 N -0.200 5.200 17 C -0.097 4.097 18 C 0.123 3.877 19 H 0.041 0.959 20 C -0.187 4.187 21 C -0.551 4.551 22 H 0.084 0.916 23 C -0.139 4.139 24 N -0.526 5.526 25 Si 0.728 3.272 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.201 1.201 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.062 0.938 46 H 0.109 0.891 47 H 0.053 0.947 48 H 0.021 0.979 49 H 0.110 0.890 50 H 0.049 0.951 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.120 -13.090 5.996 20.166 hybrid contribution -1.000 1.436 -0.140 1.755 sum -15.120 -11.654 5.855 19.968 Atomic orbital electron populations 1.22738 0.81180 1.02744 0.99897 1.87952 1.19507 1.27497 1.95395 1.22582 0.92293 0.85360 1.01100 1.22526 0.93208 0.98039 0.87325 1.87827 1.21046 1.82208 1.38358 1.22727 0.82110 1.01159 0.96691 1.21384 0.76602 1.03081 0.99113 1.46124 1.08464 1.18046 1.43620 1.23519 0.88638 0.92113 1.03474 1.19991 1.01031 0.85852 1.03205 1.23006 0.98414 1.00398 0.96954 1.23058 1.03246 0.95117 0.98438 1.73904 1.14929 1.10196 1.13717 1.74739 1.19110 1.04032 1.17933 1.22845 0.84379 0.92338 0.97472 1.59264 1.57602 0.98352 1.04831 1.22212 1.00043 1.01873 0.85606 1.19392 0.90653 0.85498 0.92169 0.95883 1.21813 1.00103 0.99450 0.97366 1.21022 1.21341 0.91603 1.21160 0.91603 1.24906 0.94826 0.99021 0.95151 1.69890 1.24393 1.27842 1.30479 0.86521 0.78348 0.82463 0.79844 1.20218 1.21273 1.20141 0.93972 0.89669 0.94246 0.91712 0.92090 0.92444 0.91208 0.93108 0.91383 0.87093 0.88718 0.86279 0.87191 0.88114 0.88100 0.88255 0.93828 0.89133 0.94684 0.97902 0.88976 0.95119 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.25 10.67 -40.08 -0.43 -4.68 16 3 C 0.06 0.61 6.32 37.16 0.23 0.84 16 4 C 0.07 0.72 6.32 37.16 0.23 0.96 16 5 O -0.38 -5.08 10.31 -40.08 -0.41 -5.49 16 6 C 0.05 0.71 6.26 37.16 0.23 0.94 16 7 C 0.12 1.74 6.36 -4.04 -0.03 1.71 16 8 N -0.47 -8.16 2.81 -114.08 -0.32 -8.48 16 9 C 0.19 3.22 7.59 -154.00 -1.17 2.05 16 10 C -0.08 -0.98 5.94 -91.77 -0.55 -1.53 16 11 C -0.15 -1.60 10.15 -26.69 -0.27 -1.87 16 12 C -0.16 -1.63 10.24 -26.69 -0.27 -1.90 16 13 N -0.29 -5.90 11.79 32.99 0.39 -5.51 16 14 N -0.32 -7.28 11.95 30.31 0.36 -6.92 16 15 C 0.39 8.13 5.11 -318.87 -1.63 6.51 16 16 N -0.47 -10.39 4.64 -176.08 -0.82 -11.20 16 17 C 0.05 1.00 9.14 60.06 0.55 1.55 16 18 C 0.23 5.80 1.95 -68.86 -0.13 5.67 16 19 H 0.02 0.68 7.99 -51.93 -0.41 0.27 16 20 C -0.13 -3.23 8.84 37.16 0.33 -2.90 16 21 C -0.51 -13.60 7.95 -34.44 -0.27 -13.88 16 22 H 0.07 1.69 6.40 -52.48 -0.34 1.36 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 24 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 25 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.11 7.74 -51.93 -0.40 0.71 16 38 H 0.11 1.65 8.12 -51.93 -0.42 1.23 16 39 H 0.09 1.12 8.04 -51.93 -0.42 0.70 16 40 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.11 1.37 7.92 -51.93 -0.41 0.96 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 46 H 0.09 1.78 6.32 -51.93 -0.33 1.45 16 47 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.00 0.05 7.22 -51.92 -0.38 -0.33 16 49 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 50 H 0.03 0.72 7.74 -51.93 -0.40 0.32 16 51 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 418.64 15.07 6.31 6.31 Total: -1.00 -32.43 418.64 -9.91 -42.33 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.88 Total: 1.29 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.72 Total: 1.09 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.24 Total: -56.58 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.84 Total: -10.17 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.43 -9.91 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620078014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.993 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds