Wall clock time and date at job start Tue Mar 31 2020 20:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00129 * 2 1 4 4 C 1.53002 * 109.47491 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.46998 * 64.99842 * 4 3 2 6 6 C 1.42895 * 113.99720 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46745 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46932 * 180.02562 * 7 6 5 9 9 C 1.36742 * 127.13708 * 85.76357 * 8 7 6 10 10 C 1.50703 * 126.34864 * 359.93362 * 9 8 7 11 11 C 1.52995 * 117.49765 * 188.74917 * 10 9 8 12 12 C 1.53004 * 117.49307 * 120.09024 * 10 9 8 13 13 N 1.30303 * 107.30364 * 179.97438 * 9 8 7 14 14 N 1.28525 * 110.05454 * 359.97438 * 13 9 8 15 15 C 1.31222 * 109.85933 * 359.74995 * 14 13 9 16 16 N 1.38577 * 126.47108 * 180.25673 * 15 14 13 17 17 C 1.46897 * 110.99991 * 71.85807 * 16 15 14 18 18 C 1.46902 * 111.00221 * 307.90296 * 16 15 14 19 19 H 1.08993 * 109.46717 * 59.99925 * 18 16 15 20 20 C 1.52999 * 109.46899 * 300.00001 * 18 16 15 21 21 C 1.50700 * 109.47111 * 180.02562 * 18 16 15 22 22 H 1.08004 * 119.99905 * 0.02562 * 21 18 16 23 23 C 1.37872 * 119.99750 * 179.97438 * 21 18 16 24 24 N 1.31517 * 120.00532 * 0.02562 * 23 21 18 25 25 Si 1.86799 * 119.99992 * 180.02562 * 23 21 18 26 26 H 1.48496 * 109.47245 * 59.99660 * 25 23 21 27 27 H 1.48498 * 109.47434 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47006 * 300.00300 * 25 23 21 29 29 H 1.08999 * 109.47039 * 59.99654 * 1 2 3 30 30 H 1.09000 * 109.47425 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47206 * 300.00082 * 1 2 3 32 32 H 1.09000 * 109.46678 * 60.00109 * 3 2 1 33 33 H 1.09000 * 109.47358 * 300.00157 * 3 2 1 34 34 H 1.09001 * 109.46912 * 305.00676 * 4 3 2 35 35 H 1.08996 * 109.47404 * 185.00284 * 4 3 2 36 36 H 1.08994 * 109.47211 * 60.00631 * 6 5 4 37 37 H 1.09000 * 109.47106 * 300.00063 * 6 5 4 38 38 H 1.08994 * 109.47254 * 60.00041 * 7 6 5 39 39 H 1.09000 * 109.46866 * 299.99593 * 7 6 5 40 40 H 1.08994 * 115.55064 * 334.42851 * 10 9 8 41 41 H 1.09003 * 117.50446 * 0.02562 * 11 10 9 42 42 H 1.09003 * 117.49665 * 145.02836 * 11 10 9 43 43 H 1.09000 * 117.49336 * 214.98048 * 12 10 9 44 44 H 1.08996 * 117.50258 * 359.97438 * 12 10 9 45 45 H 1.09003 * 109.47392 * 53.76432 * 17 16 15 46 46 H 1.09002 * 109.47161 * 173.76044 * 17 16 15 47 47 H 1.08998 * 109.47270 * 293.76054 * 17 16 15 48 48 H 1.09008 * 109.47039 * 60.00109 * 20 18 16 49 49 H 1.09001 * 109.46789 * 179.97438 * 20 18 16 50 50 H 1.09001 * 109.47576 * 300.00154 * 20 18 16 51 51 H 0.96998 * 120.00565 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3811 0.4192 -1.3246 7 6 5.7245 -0.2339 -2.6649 8 7 7.1764 -0.3990 -2.7699 9 6 7.9250 -1.4413 -2.2976 10 6 7.4085 -2.6505 -1.5614 11 6 8.4409 -3.5958 -0.9438 12 6 7.6617 -4.0220 -2.1906 13 7 9.1679 -1.1947 -2.6014 14 7 9.2547 -0.0765 -3.2291 15 6 8.0613 0.4521 -3.3652 16 7 7.7577 1.6503 -3.9918 17 6 7.9062 1.5348 -5.4487 18 6 8.5831 2.7447 -3.4636 19 1 9.6361 2.5193 -3.6319 20 6 8.3277 2.8974 -1.9628 21 6 8.2250 4.0285 -4.1669 22 1 7.4603 4.0312 -4.9296 23 6 8.8727 5.1997 -3.8358 24 7 9.8035 5.1965 -2.9067 25 14 8.4284 6.7912 -4.7070 26 1 6.9936 7.0974 -4.4772 27 1 9.2619 7.8977 -4.1723 28 1 8.6757 6.6438 -6.1638 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5681 0.8409 35 1 3.9786 2.1765 0.0890 36 1 5.7350 -0.2134 -0.5106 37 1 5.8628 1.3950 -1.2623 38 1 5.3707 0.3989 -3.4787 39 1 5.2428 -1.2097 -2.7276 40 1 6.4709 -2.5087 -1.0240 41 1 9.4937 -3.3429 -1.0696 42 1 8.1822 -4.0763 -0.0002 43 1 6.8908 -4.7826 -2.0666 44 1 8.2014 -4.0496 -3.1371 45 1 7.3162 0.6918 -5.8084 46 1 7.5567 2.4517 -5.9233 47 1 8.9558 1.3753 -5.6954 48 1 8.5865 1.9689 -1.4538 49 1 8.9405 3.7092 -1.5709 50 1 7.2746 3.1228 -1.7945 51 1 10.2595 6.0204 -2.6740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001620078014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:42 Heat of formation + Delta-G solvation = 12.071846 kcal Electronic energy + Delta-G solvation = -30681.216880 eV Core-core repulsion = 26618.382326 eV Total energy + Delta-G solvation = -4062.834555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.04695 -39.56490 -38.98584 -38.33669 -37.86422 -36.18248 -34.88063 -31.90416 -31.46420 -30.61937 -29.81267 -27.58330 -27.10519 -26.20443 -25.24631 -24.51054 -23.56411 -23.35955 -23.18454 -21.34600 -20.77255 -18.64160 -18.29163 -17.88912 -17.85079 -17.36315 -17.09285 -16.74151 -16.46780 -16.45017 -16.23500 -15.99721 -15.53254 -15.40670 -15.00530 -14.79070 -14.48107 -14.20644 -13.78127 -13.46282 -13.20776 -13.11128 -13.02486 -12.93786 -12.72269 -12.67437 -12.56984 -12.34084 -12.32050 -12.24673 -12.22415 -12.12968 -12.00634 -11.88264 -11.63549 -11.40236 -11.15470 -11.08537 -10.74680 -10.61880 -10.58298 -9.86912 -9.52818 -8.15194 -6.29964 0.63806 1.15701 1.45287 1.47220 1.54926 1.73767 2.38597 2.53141 2.85071 2.94830 3.00697 3.16349 3.32343 3.52953 3.77459 3.83067 3.94121 4.07513 4.09355 4.13781 4.14922 4.18048 4.32706 4.40478 4.44243 4.48398 4.57166 4.58761 4.60079 4.60557 4.66449 4.74152 4.77170 4.81459 4.82641 4.88801 4.89260 4.95816 4.99950 5.08909 5.17928 5.31695 5.35507 5.52148 5.62146 5.83076 5.94106 6.00525 6.12242 6.24127 6.58408 6.80241 7.39281 7.72111 8.91855 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007214 B = 0.004072 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3880.301531 B = 6874.103896 C = 9939.139307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.064 3.936 4 C 0.057 3.943 5 O -0.385 6.385 6 C 0.062 3.938 7 C 0.120 3.880 8 N -0.462 5.462 9 C 0.213 3.787 10 C -0.100 4.100 11 C -0.146 4.146 12 C -0.140 4.140 13 N -0.326 5.326 14 N -0.359 5.359 15 C 0.367 3.633 16 N -0.467 5.467 17 C 0.053 3.947 18 C 0.238 3.762 19 H -0.027 1.027 20 C -0.108 4.108 21 C -0.525 4.525 22 H 0.074 0.926 23 C 0.014 3.986 24 N -0.921 5.921 25 Si 0.969 3.031 26 H -0.266 1.266 27 H -0.287 1.287 28 H -0.268 1.268 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.104 0.896 39 H 0.128 0.872 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.015 0.985 48 H -0.003 1.003 49 H 0.067 0.933 50 H 0.038 0.962 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.316 -14.278 6.545 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.012 4.012 4 C -0.019 4.019 5 O -0.304 6.304 6 C -0.016 4.016 7 C -0.002 4.002 8 N -0.156 5.156 9 C -0.055 4.055 10 C -0.121 4.121 11 C -0.183 4.183 12 C -0.178 4.178 13 N -0.165 5.165 14 N -0.202 5.202 15 C 0.010 3.990 16 N -0.193 5.193 17 C -0.094 4.094 18 C 0.133 3.867 19 H -0.009 1.009 20 C -0.166 4.166 21 C -0.563 4.563 22 H 0.092 0.908 23 C -0.185 4.185 24 N -0.560 5.560 25 Si 0.794 3.206 26 H -0.191 1.191 27 H -0.213 1.213 28 H -0.193 1.193 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.122 0.878 39 H 0.146 0.854 40 H 0.165 0.835 41 H 0.103 0.897 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.034 0.966 48 H 0.016 0.984 49 H 0.086 0.914 50 H 0.057 0.943 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.223 -14.390 6.472 23.358 hybrid contribution -0.077 1.699 -0.229 1.717 sum -17.300 -12.690 6.242 22.345 Atomic orbital electron populations 1.22915 0.79542 1.03778 1.00820 1.87899 1.21394 1.28195 1.95613 1.22636 0.91167 0.85255 1.02182 1.22756 0.94397 0.98169 0.86593 1.87815 1.20261 1.82487 1.39801 1.22508 0.82530 0.99704 0.96853 1.21621 0.74617 1.04879 0.99096 1.46227 1.09455 1.17257 1.42700 1.24484 0.87612 0.92499 1.00907 1.20380 1.02616 0.84681 1.04397 1.23095 0.96810 0.99579 0.98855 1.23149 1.03355 0.93919 0.97369 1.73826 1.17170 1.09993 1.15542 1.74616 1.20837 1.05415 1.19315 1.22700 0.84957 0.92619 0.98749 1.59190 1.56170 0.98225 1.05733 1.22235 0.99354 1.03140 0.84684 1.19040 0.88458 0.86767 0.92480 1.00906 1.21542 0.99822 0.98093 0.97132 1.21310 1.21497 0.92075 1.21402 0.90781 1.25777 0.94540 1.02475 0.95725 1.70046 1.25445 1.28658 1.31893 0.85440 0.78394 0.77991 0.78805 1.19082 1.21278 1.19337 0.93601 0.88680 0.92752 0.89244 0.92343 0.91678 0.90976 0.91907 0.94389 0.87768 0.85372 0.83494 0.89680 0.84848 0.84434 0.89950 0.90957 0.88918 0.96636 0.98402 0.91445 0.94314 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.23 10.67 -144.35 -1.54 -9.77 16 3 C 0.06 1.10 6.32 71.98 0.45 1.56 16 4 C 0.06 1.17 6.32 71.98 0.45 1.62 16 5 O -0.38 -9.77 10.31 -144.35 -1.49 -11.26 16 6 C 0.06 1.65 6.26 71.98 0.45 2.10 16 7 C 0.12 3.22 6.36 86.38 0.55 3.77 16 8 N -0.46 -15.92 2.81 -514.84 -1.45 -17.36 16 9 C 0.21 7.09 7.59 137.64 1.04 8.14 16 10 C -0.10 -2.18 5.94 -11.54 -0.07 -2.24 16 11 C -0.15 -2.74 10.15 30.62 0.31 -2.43 16 12 C -0.14 -2.38 10.24 30.62 0.31 -2.07 16 13 N -0.33 -13.76 11.79 -49.53 -0.58 -14.35 16 14 N -0.36 -17.33 11.95 -58.00 -0.69 -18.03 16 15 C 0.37 15.90 5.11 260.11 1.33 17.23 16 16 N -0.47 -21.03 4.64 -711.01 -3.30 -24.33 16 17 C 0.05 2.15 9.14 127.69 1.17 3.32 16 18 C 0.24 12.69 1.95 44.17 0.09 12.78 16 19 H -0.03 -1.67 7.99 -2.39 -0.02 -1.69 16 20 C -0.11 -5.62 8.84 71.98 0.64 -4.98 16 21 C -0.52 -28.37 7.95 25.60 0.20 -28.17 16 22 H 0.07 3.81 6.40 -2.91 -0.02 3.79 16 23 C 0.01 0.77 5.30 84.65 0.45 1.22 16 24 N -0.92 -53.68 11.32 21.45 0.24 -53.44 16 25 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 1.24 7.74 -2.39 -0.02 1.22 16 38 H 0.10 2.97 8.12 -2.39 -0.02 2.95 16 39 H 0.13 2.60 8.04 -2.39 -0.02 2.58 16 40 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.08 2.07 7.92 -2.39 -0.02 2.05 16 42 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.07 2.47 8.10 -2.39 -0.02 2.45 16 46 H 0.09 3.65 6.32 -2.39 -0.02 3.64 16 47 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.00 -0.16 7.22 -2.38 -0.02 -0.18 16 49 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 50 H 0.04 1.89 7.74 -2.39 -0.02 1.87 16 51 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -74.03 418.64 2.75 -71.29 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.90 Total: 19.17 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 8.63 Total: 13.41 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -5.78 Total: -127.51 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -3.03 Total: -21.03 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -74.03 2.75 -71.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620078014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.357 kcal (2) G-P(sol) polarization free energy of solvation -74.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds