Wall clock time and date at job start Tue Mar 31 2020 20:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99553 * 2 1 4 4 C 1.52997 * 109.46929 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47431 * 64.99646 * 4 3 2 6 6 C 1.42896 * 113.99946 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47039 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47222 * 175.05067 * 7 6 5 9 9 C 1.36739 * 127.13802 * 274.86369 * 8 7 6 10 10 C 1.50697 * 126.34457 * 359.96986 * 9 8 7 11 11 C 1.52999 * 117.49878 * 188.74128 * 10 9 8 12 12 C 1.53005 * 117.49984 * 120.08371 * 10 9 8 13 13 N 1.30291 * 107.30372 * 179.97438 * 9 8 7 14 14 N 1.28524 * 110.05713 * 0.02562 * 13 9 8 15 15 C 1.31211 * 109.86239 * 359.97438 * 14 13 9 16 16 N 1.38577 * 126.47863 * 180.02562 * 15 14 13 17 17 C 1.46899 * 110.99931 * 57.44772 * 16 15 14 18 18 C 1.46909 * 110.99892 * 293.50213 * 16 15 14 19 19 H 1.08995 * 109.47027 * 309.99617 * 18 16 15 20 20 C 1.53002 * 109.46763 * 69.99430 * 18 16 15 21 21 C 1.50693 * 109.47264 * 189.99542 * 18 16 15 22 22 H 1.08009 * 120.00122 * 0.02562 * 21 18 16 23 23 C 1.37872 * 120.00099 * 179.97438 * 21 18 16 24 24 N 1.31518 * 120.00082 * 179.97438 * 23 21 18 25 25 Si 1.86797 * 119.99929 * 0.02562 * 23 21 18 26 26 H 1.48500 * 109.47030 * 90.00167 * 25 23 21 27 27 H 1.48502 * 109.46967 * 209.99790 * 25 23 21 28 28 H 1.48496 * 109.47249 * 329.99615 * 25 23 21 29 29 H 1.09007 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47276 * 299.99599 * 1 2 3 31 31 H 1.08999 * 109.47554 * 60.00284 * 1 2 3 32 32 H 1.09002 * 109.47174 * 60.00177 * 3 2 1 33 33 H 1.09002 * 109.47021 * 299.99945 * 3 2 1 34 34 H 1.09000 * 109.47010 * 304.99753 * 4 3 2 35 35 H 1.09007 * 109.47234 * 185.00013 * 4 3 2 36 36 H 1.09007 * 109.47014 * 60.00460 * 6 5 4 37 37 H 1.09000 * 109.47970 * 300.00270 * 6 5 4 38 38 H 1.09000 * 109.47219 * 55.04626 * 7 6 5 39 39 H 1.09000 * 109.47282 * 295.05027 * 7 6 5 40 40 H 1.09000 * 115.55473 * 334.41721 * 10 9 8 41 41 H 1.09002 * 117.49788 * 0.02562 * 11 10 9 42 42 H 1.08994 * 117.50057 * 145.02217 * 11 10 9 43 43 H 1.08996 * 117.50128 * 214.98442 * 12 10 9 44 44 H 1.09003 * 117.49708 * 359.97403 * 12 10 9 45 45 H 1.09007 * 109.46535 * 65.52980 * 17 16 15 46 46 H 1.09003 * 109.47247 * 185.51910 * 17 16 15 47 47 H 1.08998 * 109.47887 * 305.52898 * 17 16 15 48 48 H 1.08993 * 109.47590 * 300.00019 * 20 18 16 49 49 H 1.09002 * 109.47341 * 60.00698 * 20 18 16 50 50 H 1.09005 * 109.46781 * 179.97438 * 20 18 16 51 51 H 0.97004 * 119.99793 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3811 0.4204 -1.3250 7 6 5.7246 -0.2329 -2.6652 8 7 7.1801 -0.2888 -2.8224 9 6 7.9965 0.6952 -3.3074 10 6 7.5657 2.0571 -3.7874 11 6 8.6167 2.9273 -4.4796 12 6 8.1442 3.2761 -3.0660 13 7 9.2157 0.2368 -3.2776 14 7 9.2252 -0.9607 -2.8109 15 6 8.0024 -1.3335 -2.5149 16 7 7.6186 -2.5568 -1.9892 17 6 8.3081 -2.8241 -0.7200 18 6 7.8517 -3.6406 -2.9533 19 1 7.4211 -3.3685 -3.9169 20 6 9.3565 -3.8663 -3.1126 21 6 7.2041 -4.9059 -2.4529 22 1 6.6721 -4.9051 -1.5130 23 6 7.2898 -6.0644 -3.1955 24 7 6.7250 -7.1689 -2.7586 25 14 8.2092 -6.0657 -4.8215 26 1 9.6348 -6.4072 -4.5838 27 1 7.6044 -7.0714 -5.7314 28 1 8.1195 -4.7195 -5.4420 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6884 1.8464 -0.8900 34 1 3.8513 0.5684 0.8410 35 1 3.9784 2.1767 0.0889 36 1 5.7358 -0.2117 -0.5108 37 1 5.8622 1.3965 -1.2631 38 1 5.2938 0.3539 -3.4764 39 1 5.3173 -1.2435 -2.6918 40 1 6.5391 2.1258 -4.1474 41 1 9.6197 2.5144 -4.5881 42 1 8.2816 3.5686 -5.2947 43 1 7.4985 4.1467 -2.9517 44 1 8.8361 3.0929 -2.2439 45 1 7.9866 -2.0991 0.0278 46 1 8.0643 -3.8303 -0.3789 47 1 9.3850 -2.7412 -0.8669 48 1 9.8250 -2.9512 -3.4745 49 1 9.7872 -4.1385 -2.1490 50 1 9.5295 -4.6708 -3.8276 51 1 6.7850 -7.9838 -3.2813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001620078015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:48 Heat of formation + Delta-G solvation = 44.488092 kcal Electronic energy + Delta-G solvation = -30601.323872 eV Core-core repulsion = 26539.894991 eV Total energy + Delta-G solvation = -4061.428881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.70902 -38.73575 -37.77548 -37.51028 -36.91012 -34.99418 -32.72172 -31.03063 -30.18712 -29.01726 -28.73138 -26.46870 -25.58951 -25.12226 -24.07542 -23.40773 -22.83322 -22.55660 -21.47482 -19.93889 -19.41462 -17.53917 -17.06211 -16.83627 -16.66801 -16.17933 -15.83146 -15.69941 -15.49890 -15.45044 -15.12415 -14.75717 -14.47992 -13.93607 -13.67343 -13.55166 -13.41615 -12.69204 -12.52350 -12.26004 -12.23504 -12.13492 -11.78225 -11.69147 -11.65852 -11.51160 -11.46188 -11.32741 -11.15922 -11.11676 -10.92741 -10.72322 -10.52337 -10.22592 -10.02626 -9.96725 -9.88646 -9.83353 -9.52571 -9.08712 -8.64125 -8.51136 -7.92120 -6.11807 -4.11773 1.92202 2.35286 3.06740 3.27528 3.37995 3.39512 3.46085 3.52842 3.77224 4.24925 4.37227 4.46237 4.54254 4.66265 4.71808 4.75855 4.81109 4.87821 4.90031 5.03175 5.09533 5.11125 5.16109 5.20094 5.21690 5.38183 5.44967 5.46163 5.48283 5.49411 5.65585 5.69453 5.73669 5.92364 6.02544 6.12571 6.21643 6.28386 6.32823 6.48388 6.57402 6.67500 6.78755 6.84829 6.95306 7.02222 7.17811 7.50761 7.64514 7.95997 8.53758 8.92784 9.07541 9.48826 11.00381 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007444 B = 0.004070 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3760.673977 B = 6877.504335 C = 9806.937742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.063 3.937 4 C 0.066 3.934 5 O -0.374 6.374 6 C 0.056 3.944 7 C 0.117 3.883 8 N -0.463 5.463 9 C 0.193 3.807 10 C -0.081 4.081 11 C -0.149 4.149 12 C -0.160 4.160 13 N -0.289 5.289 14 N -0.314 5.314 15 C 0.375 3.625 16 N -0.458 5.458 17 C 0.044 3.956 18 C 0.196 3.804 19 H 0.036 0.964 20 C -0.188 4.188 21 C -0.508 4.508 22 H 0.086 0.914 23 C 0.077 3.923 24 N -0.894 5.894 25 Si 0.884 3.116 26 H -0.277 1.277 27 H -0.296 1.296 28 H -0.270 1.270 29 H 0.088 0.912 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.047 0.953 46 H 0.097 0.903 47 H 0.040 0.960 48 H 0.055 0.945 49 H 0.058 0.942 50 H 0.043 0.957 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 22.774 3.751 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.013 4.013 4 C -0.011 4.011 5 O -0.292 6.292 6 C -0.022 4.022 7 C -0.007 4.007 8 N -0.157 5.157 9 C -0.073 4.073 10 C -0.101 4.101 11 C -0.187 4.187 12 C -0.199 4.199 13 N -0.130 5.130 14 N -0.157 5.157 15 C 0.019 3.981 16 N -0.184 5.184 17 C -0.103 4.103 18 C 0.090 3.910 19 H 0.054 0.946 20 C -0.247 4.247 21 C -0.546 4.546 22 H 0.104 0.896 23 C -0.126 4.126 24 N -0.532 5.532 25 Si 0.715 3.285 26 H -0.204 1.204 27 H -0.223 1.223 28 H -0.195 1.195 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.066 0.934 46 H 0.115 0.885 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.062 0.938 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.649 22.266 3.526 23.503 hybrid contribution -0.296 0.034 -0.686 0.748 sum -6.945 22.300 2.840 23.528 Atomic orbital electron populations 1.22758 0.81041 1.03095 0.99654 1.88024 1.19598 1.26922 1.95315 1.22545 0.92239 0.85778 1.00769 1.22524 0.93425 0.97429 0.87736 1.87872 1.20925 1.82291 1.38129 1.22642 0.82131 0.99595 0.97803 1.21489 0.76232 1.05510 0.97466 1.46101 1.08576 1.12616 1.48455 1.23537 0.87561 0.92564 1.03687 1.20004 0.99333 0.84304 1.06492 1.23008 0.99596 1.00776 0.95333 1.23060 1.03346 0.96803 0.96666 1.73896 1.16955 1.04699 1.17420 1.74718 1.17700 1.05796 1.17495 1.22911 0.85111 0.90643 0.99453 1.59178 1.56411 0.96796 1.05973 1.22317 0.96666 1.03122 0.88239 1.19825 0.92073 0.88585 0.90510 0.94626 1.22867 0.99804 1.00526 1.01499 1.20793 1.34237 0.90728 1.08819 0.89607 1.24817 0.95097 0.95298 0.97365 1.69862 1.44189 1.00488 1.38624 0.86916 0.79726 0.77648 0.84255 1.20389 1.22319 1.19528 0.89370 0.94302 0.94061 0.91826 0.92420 0.92068 0.91797 0.92008 0.93027 0.88626 0.86293 0.86123 0.87200 0.88037 0.88092 0.88283 0.93387 0.88477 0.94110 0.92619 0.92341 0.93818 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.46 10.67 -40.08 -0.43 -4.89 16 3 C 0.06 0.55 6.32 37.16 0.23 0.79 16 4 C 0.07 0.62 6.32 37.16 0.23 0.86 16 5 O -0.37 -4.65 10.31 -40.08 -0.41 -5.06 16 6 C 0.06 0.69 6.26 37.16 0.23 0.92 16 7 C 0.12 1.62 6.35 -4.04 -0.03 1.60 16 8 N -0.46 -7.72 2.81 -114.09 -0.32 -8.04 16 9 C 0.19 3.06 7.59 -154.02 -1.17 1.89 16 10 C -0.08 -0.89 6.01 -91.77 -0.55 -1.45 16 11 C -0.15 -1.43 10.15 -26.69 -0.27 -1.70 16 12 C -0.16 -1.44 10.24 -26.69 -0.27 -1.71 16 13 N -0.29 -5.50 11.79 32.99 0.39 -5.11 16 14 N -0.31 -6.61 9.84 30.31 0.30 -6.31 16 15 C 0.37 7.50 6.27 -318.88 -2.00 5.50 16 16 N -0.46 -9.73 4.71 -176.08 -0.83 -10.56 16 17 C 0.04 0.85 8.53 60.06 0.51 1.36 16 18 C 0.20 4.76 1.87 -68.86 -0.13 4.64 16 19 H 0.04 0.93 7.11 -51.93 -0.37 0.56 16 20 C -0.19 -4.43 7.87 37.16 0.29 -4.14 16 21 C -0.51 -13.92 8.41 -34.45 -0.29 -14.21 16 22 H 0.09 2.52 7.42 -52.48 -0.39 2.13 16 23 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 24 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 25 Si 0.88 22.30 24.37 -169.99 -4.14 18.16 16 26 H -0.28 -6.87 6.87 56.52 0.39 -6.48 16 27 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.27 -6.74 6.53 56.52 0.37 -6.37 16 29 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 1.11 7.62 -51.93 -0.40 0.71 16 39 H 0.12 1.90 8.12 -51.93 -0.42 1.48 16 40 H 0.12 1.11 7.66 -51.93 -0.40 0.71 16 41 H 0.11 1.25 7.92 -51.93 -0.41 0.84 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 46 H 0.10 1.98 6.65 -51.93 -0.35 1.64 16 47 H 0.04 0.79 6.59 -51.93 -0.34 0.45 16 48 H 0.05 1.29 6.00 -51.93 -0.31 0.97 16 49 H 0.06 1.32 6.54 -51.93 -0.34 0.98 16 50 H 0.04 1.06 3.27 -51.93 -0.17 0.89 16 51 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 406.67 15.07 6.13 6.13 Total: -1.00 -33.73 406.67 -9.30 -43.03 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.57 Total: 0.90 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.18 Total: -2.21 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.31 Total: -56.05 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.84 Total: -9.95 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.16 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.73 -9.30 -43.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620078015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.516 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds