Wall clock time and date at job start Tue Mar 31 2020 20:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99553 * 2 1 4 4 C 1.52997 * 109.46929 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47431 * 64.99646 * 4 3 2 6 6 C 1.42896 * 113.99946 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47039 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47222 * 175.05067 * 7 6 5 9 9 C 1.36739 * 127.13802 * 274.86369 * 8 7 6 10 10 C 1.50697 * 126.34457 * 359.96986 * 9 8 7 11 11 C 1.52999 * 117.49878 * 188.74128 * 10 9 8 12 12 C 1.53005 * 117.49984 * 120.08371 * 10 9 8 13 13 N 1.30291 * 107.30372 * 179.97438 * 9 8 7 14 14 N 1.28524 * 110.05713 * 0.02562 * 13 9 8 15 15 C 1.31211 * 109.86239 * 359.97438 * 14 13 9 16 16 N 1.38577 * 126.47863 * 180.02562 * 15 14 13 17 17 C 1.46899 * 110.99931 * 57.44772 * 16 15 14 18 18 C 1.46909 * 110.99892 * 293.50213 * 16 15 14 19 19 H 1.08995 * 109.47027 * 309.99617 * 18 16 15 20 20 C 1.53002 * 109.46763 * 69.99430 * 18 16 15 21 21 C 1.50693 * 109.47264 * 189.99542 * 18 16 15 22 22 H 1.08009 * 120.00122 * 0.02562 * 21 18 16 23 23 C 1.37872 * 120.00099 * 179.97438 * 21 18 16 24 24 N 1.31518 * 120.00082 * 179.97438 * 23 21 18 25 25 Si 1.86797 * 119.99929 * 0.02562 * 23 21 18 26 26 H 1.48500 * 109.47030 * 90.00167 * 25 23 21 27 27 H 1.48502 * 109.46967 * 209.99790 * 25 23 21 28 28 H 1.48496 * 109.47249 * 329.99615 * 25 23 21 29 29 H 1.09007 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47276 * 299.99599 * 1 2 3 31 31 H 1.08999 * 109.47554 * 60.00284 * 1 2 3 32 32 H 1.09002 * 109.47174 * 60.00177 * 3 2 1 33 33 H 1.09002 * 109.47021 * 299.99945 * 3 2 1 34 34 H 1.09000 * 109.47010 * 304.99753 * 4 3 2 35 35 H 1.09007 * 109.47234 * 185.00013 * 4 3 2 36 36 H 1.09007 * 109.47014 * 60.00460 * 6 5 4 37 37 H 1.09000 * 109.47970 * 300.00270 * 6 5 4 38 38 H 1.09000 * 109.47219 * 55.04626 * 7 6 5 39 39 H 1.09000 * 109.47282 * 295.05027 * 7 6 5 40 40 H 1.09000 * 115.55473 * 334.41721 * 10 9 8 41 41 H 1.09002 * 117.49788 * 0.02562 * 11 10 9 42 42 H 1.08994 * 117.50057 * 145.02217 * 11 10 9 43 43 H 1.08996 * 117.50128 * 214.98442 * 12 10 9 44 44 H 1.09003 * 117.49708 * 359.97403 * 12 10 9 45 45 H 1.09007 * 109.46535 * 65.52980 * 17 16 15 46 46 H 1.09003 * 109.47247 * 185.51910 * 17 16 15 47 47 H 1.08998 * 109.47887 * 305.52898 * 17 16 15 48 48 H 1.08993 * 109.47590 * 300.00019 * 20 18 16 49 49 H 1.09002 * 109.47341 * 60.00698 * 20 18 16 50 50 H 1.09005 * 109.46781 * 179.97438 * 20 18 16 51 51 H 0.97004 * 119.99793 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3811 0.4204 -1.3250 7 6 5.7246 -0.2329 -2.6652 8 7 7.1801 -0.2888 -2.8224 9 6 7.9965 0.6952 -3.3074 10 6 7.5657 2.0571 -3.7874 11 6 8.6167 2.9273 -4.4796 12 6 8.1442 3.2761 -3.0660 13 7 9.2157 0.2368 -3.2776 14 7 9.2252 -0.9607 -2.8109 15 6 8.0024 -1.3335 -2.5149 16 7 7.6186 -2.5568 -1.9892 17 6 8.3081 -2.8241 -0.7200 18 6 7.8517 -3.6406 -2.9533 19 1 7.4211 -3.3685 -3.9169 20 6 9.3565 -3.8663 -3.1126 21 6 7.2041 -4.9059 -2.4529 22 1 6.6721 -4.9051 -1.5130 23 6 7.2898 -6.0644 -3.1955 24 7 6.7250 -7.1689 -2.7586 25 14 8.2092 -6.0657 -4.8215 26 1 9.6348 -6.4072 -4.5838 27 1 7.6044 -7.0714 -5.7314 28 1 8.1195 -4.7195 -5.4420 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6884 1.8464 -0.8900 34 1 3.8513 0.5684 0.8410 35 1 3.9784 2.1767 0.0889 36 1 5.7358 -0.2117 -0.5108 37 1 5.8622 1.3965 -1.2631 38 1 5.2938 0.3539 -3.4764 39 1 5.3173 -1.2435 -2.6918 40 1 6.5391 2.1258 -4.1474 41 1 9.6197 2.5144 -4.5881 42 1 8.2816 3.5686 -5.2947 43 1 7.4985 4.1467 -2.9517 44 1 8.8361 3.0929 -2.2439 45 1 7.9866 -2.0991 0.0278 46 1 8.0643 -3.8303 -0.3789 47 1 9.3850 -2.7412 -0.8669 48 1 9.8250 -2.9512 -3.4745 49 1 9.7872 -4.1385 -2.1490 50 1 9.5295 -4.6708 -3.8276 51 1 6.7850 -7.9838 -3.2813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001620078015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:47 Heat of formation + Delta-G solvation = 23.090938 kcal Electronic energy + Delta-G solvation = -30602.251722 eV Core-core repulsion = 26539.894991 eV Total energy + Delta-G solvation = -4062.356731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.09614 -39.55594 -39.33522 -38.33980 -37.91551 -36.22350 -34.81487 -32.10229 -31.83953 -30.41539 -29.82186 -27.35673 -27.14438 -27.01191 -25.25395 -24.50957 -23.54333 -23.34818 -23.06439 -21.18856 -20.92364 -18.85075 -18.55653 -17.82658 -17.68738 -17.58934 -17.17303 -16.80908 -16.62971 -16.52411 -16.20560 -16.04490 -15.41247 -15.40206 -15.28869 -14.80027 -14.51683 -14.28989 -14.06742 -13.56821 -13.39494 -13.31647 -13.22659 -13.09177 -12.91074 -12.76931 -12.55817 -12.44950 -12.32239 -12.30914 -12.11478 -12.00215 -11.95773 -11.65648 -11.55915 -11.41705 -11.17343 -11.07799 -10.82520 -10.72372 -10.60857 -9.89818 -9.60271 -8.33931 -6.37209 0.59831 1.09516 1.25574 1.30595 1.39032 1.67571 2.25486 2.50237 2.88817 2.91124 2.96124 3.01255 3.29348 3.50298 3.77915 3.82438 3.94128 4.01105 4.09145 4.12422 4.15660 4.23383 4.30863 4.33956 4.37709 4.43042 4.48360 4.50371 4.54619 4.56294 4.58177 4.60988 4.72801 4.78050 4.80809 4.82184 4.88630 4.91178 4.96813 5.00727 5.05376 5.17576 5.25576 5.32453 5.48466 5.61416 5.81356 6.03452 6.15899 6.29107 6.53622 6.67285 7.26448 7.65905 8.81693 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007444 B = 0.004070 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3760.673977 B = 6877.504335 C = 9806.937742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.060 3.940 4 C 0.058 3.942 5 O -0.392 6.392 6 C 0.069 3.931 7 C 0.115 3.885 8 N -0.460 5.460 9 C 0.216 3.784 10 C -0.101 4.101 11 C -0.146 4.146 12 C -0.139 4.139 13 N -0.323 5.323 14 N -0.338 5.338 15 C 0.351 3.649 16 N -0.461 5.461 17 C 0.050 3.950 18 C 0.206 3.794 19 H 0.019 0.981 20 C -0.178 4.178 21 C -0.503 4.503 22 H 0.056 0.944 23 C 0.030 3.970 24 N -0.935 5.935 25 Si 0.937 3.063 26 H -0.267 1.267 27 H -0.291 1.291 28 H -0.267 1.267 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.148 0.852 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.039 0.961 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.037 0.963 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.083 26.404 3.017 27.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.017 4.017 4 C -0.018 4.018 5 O -0.310 6.310 6 C -0.009 4.009 7 C -0.008 4.008 8 N -0.154 5.154 9 C -0.051 4.051 10 C -0.122 4.122 11 C -0.183 4.183 12 C -0.177 4.177 13 N -0.163 5.163 14 N -0.181 5.181 15 C -0.006 4.006 16 N -0.186 5.186 17 C -0.097 4.097 18 C 0.098 3.902 19 H 0.037 0.963 20 C -0.237 4.237 21 C -0.541 4.541 22 H 0.074 0.926 23 C -0.169 4.169 24 N -0.574 5.574 25 Si 0.766 3.234 26 H -0.193 1.193 27 H -0.218 1.218 28 H -0.192 1.192 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.143 0.857 39 H 0.109 0.891 40 H 0.166 0.834 41 H 0.105 0.895 42 H 0.150 0.850 43 H 0.155 0.845 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.057 0.943 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.055 0.945 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.183 25.921 2.806 27.044 hybrid contribution -0.209 -0.951 -0.387 1.048 sum -7.392 24.970 2.419 26.153 Atomic orbital electron populations 1.22891 0.79607 1.03434 1.01034 1.87966 1.21444 1.28998 1.95630 1.22747 0.91503 0.84951 1.02454 1.22806 0.94283 0.98574 0.86173 1.87848 1.20640 1.82933 1.39627 1.22437 0.82565 1.00032 0.95848 1.21626 0.74615 1.04735 0.99784 1.46220 1.09440 1.11924 1.47778 1.24481 0.86474 0.93575 1.00545 1.20400 1.01091 0.82215 1.08493 1.23096 0.97997 1.00307 0.96944 1.23153 1.02665 0.96259 0.95657 1.73843 1.18824 1.04316 1.19303 1.74583 1.18515 1.07017 1.18022 1.22707 0.85778 0.90837 1.01293 1.58995 1.56978 0.96897 1.05770 1.22259 0.96429 1.02832 0.88165 1.19503 0.92085 0.88289 0.90299 0.96266 1.22739 0.99065 1.00397 1.01486 1.20913 1.33477 0.92210 1.07537 0.92632 1.25483 0.95975 0.94982 1.00450 1.69973 1.45967 1.01255 1.40237 0.86036 0.79018 0.77758 0.80620 1.19332 1.21783 1.19170 0.89704 0.92396 0.93134 0.89069 0.91624 0.93129 0.88630 0.94025 0.90725 0.85692 0.89086 0.83396 0.89506 0.85012 0.84531 0.89803 0.91051 0.90172 0.94284 0.92174 0.91995 0.94485 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -9.57 10.67 -144.34 -1.54 -11.11 16 3 C 0.06 0.92 6.32 71.98 0.45 1.37 16 4 C 0.06 0.98 6.32 71.98 0.45 1.44 16 5 O -0.39 -9.13 10.31 -144.34 -1.49 -10.62 16 6 C 0.07 1.58 6.26 71.98 0.45 2.03 16 7 C 0.12 3.07 6.35 86.38 0.55 3.62 16 8 N -0.46 -14.93 2.81 -514.86 -1.45 -16.37 16 9 C 0.22 6.49 7.59 137.64 1.04 7.53 16 10 C -0.10 -1.89 6.01 -11.54 -0.07 -1.96 16 11 C -0.15 -2.30 10.15 30.62 0.31 -1.99 16 12 C -0.14 -1.93 10.24 30.62 0.31 -1.61 16 13 N -0.32 -12.09 11.79 -49.54 -0.58 -12.67 16 14 N -0.34 -14.25 9.84 -58.01 -0.57 -14.82 16 15 C 0.35 14.10 6.27 260.11 1.63 15.73 16 16 N -0.46 -20.06 4.71 -710.99 -3.35 -23.41 16 17 C 0.05 1.99 8.53 127.69 1.09 3.08 16 18 C 0.21 10.18 1.87 44.17 0.08 10.26 16 19 H 0.02 1.02 7.11 -2.39 -0.02 1.01 16 20 C -0.18 -8.42 7.87 71.98 0.57 -7.85 16 21 C -0.50 -28.49 8.41 25.60 0.22 -28.27 16 22 H 0.06 3.43 7.42 -2.91 -0.02 3.40 16 23 C 0.03 1.75 5.45 84.65 0.46 2.21 16 24 N -0.93 -57.45 13.96 21.45 0.30 -57.15 16 25 Si 0.94 46.33 24.37 68.60 1.67 48.00 16 26 H -0.27 -12.72 6.87 99.48 0.68 -12.04 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.27 -12.94 6.53 99.48 0.65 -12.29 16 29 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.13 2.57 7.62 -2.39 -0.02 2.55 16 39 H 0.09 2.97 8.12 -2.39 -0.02 2.95 16 40 H 0.15 1.99 7.66 -2.39 -0.02 1.97 16 41 H 0.09 1.82 7.92 -2.39 -0.02 1.80 16 42 H 0.13 1.30 8.14 -2.39 -0.02 1.29 16 43 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 46 H 0.08 3.42 6.65 -2.39 -0.02 3.40 16 47 H 0.04 1.54 6.59 -2.39 -0.02 1.52 16 48 H 0.06 2.78 6.00 -2.39 -0.01 2.77 16 49 H 0.06 2.83 6.54 -2.39 -0.02 2.81 16 50 H 0.04 1.77 3.27 -2.38 -0.01 1.76 16 51 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -75.80 406.67 2.63 -73.17 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.83 Total: 17.74 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 8.80 Total: 7.24 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -5.65 Total: -124.42 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -3.03 Total: -21.73 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.67 Total: 48.00 kcal Total: -75.80 2.63 -73.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620078015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.261 kcal (2) G-P(sol) polarization free energy of solvation -75.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds