Wall clock time and date at job start Tue Mar 31 2020 21:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47228 * 2 1 4 4 C 1.36452 * 127.14016 * 264.53421 * 3 2 1 5 5 N 1.38580 * 126.46981 * 0.02562 * 4 3 2 6 6 C 1.46854 * 110.99687 * 182.47402 * 5 4 3 7 7 C 1.53035 * 109.52111 * 174.16320 * 6 5 4 8 8 C 1.53113 * 109.28427 * 59.17566 * 7 6 5 9 9 O 1.42904 * 109.52481 * 62.24711 * 8 7 6 10 10 C 1.52997 * 109.52778 * 182.37783 * 8 7 6 11 11 O 1.42900 * 109.47450 * 179.87336 * 10 8 7 12 12 C 1.53126 * 109.21202 * 302.31475 * 8 7 6 13 13 C 1.46845 * 111.00210 * 58.26405 * 5 4 3 14 14 N 1.31218 * 107.05514 * 180.28160 * 4 3 2 15 15 N 1.28522 * 109.86069 * 359.55965 * 14 4 3 16 16 C 1.30299 * 110.05383 * 0.45579 * 15 14 4 17 17 C 1.50697 * 126.34671 * 179.68807 * 16 15 14 18 18 C 1.53005 * 109.46686 * 127.34310 * 17 16 15 19 19 C 1.52995 * 109.47484 * 247.34092 * 17 16 15 20 20 C 1.50700 * 109.47422 * 7.34842 * 17 16 15 21 21 H 1.07999 * 119.99732 * 359.97438 * 20 17 16 22 22 C 1.37871 * 120.00197 * 179.97438 * 20 17 16 23 23 N 1.31523 * 120.00093 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 120.00218 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.46909 * 89.99848 * 24 22 20 26 26 H 1.48498 * 109.47325 * 210.00063 * 24 22 20 27 27 H 1.48501 * 109.47106 * 330.00204 * 24 22 20 28 28 H 1.09001 * 109.47184 * 67.24935 * 1 2 3 29 29 H 1.09000 * 109.46839 * 187.24696 * 1 2 3 30 30 H 1.08996 * 109.47063 * 307.25149 * 1 2 3 31 31 H 1.09003 * 109.47165 * 240.00049 * 2 1 3 32 32 H 1.08997 * 109.47104 * 120.00167 * 2 1 3 33 33 H 1.08996 * 109.46326 * 54.14318 * 6 5 4 34 34 H 1.09001 * 109.44948 * 294.16485 * 6 5 4 35 35 H 1.09002 * 109.50358 * 299.23537 * 7 6 5 36 36 H 1.09000 * 109.50426 * 179.12292 * 7 6 5 37 37 H 0.96696 * 113.99919 * 180.12250 * 9 8 7 38 38 H 1.09002 * 109.47168 * 299.87643 * 10 8 7 39 39 H 1.09001 * 109.46948 * 59.87090 * 10 8 7 40 40 H 0.96702 * 113.99829 * 180.02562 * 11 10 8 41 41 H 1.09001 * 109.50599 * 177.62377 * 12 8 7 42 42 H 1.08997 * 109.50266 * 297.74317 * 12 8 7 43 43 H 1.09005 * 109.46053 * 305.85200 * 13 5 4 44 44 H 1.09002 * 109.46601 * 65.82961 * 13 5 4 45 45 H 1.09002 * 109.46958 * 71.66869 * 18 17 16 46 46 H 1.09002 * 109.47194 * 191.66329 * 18 17 16 47 47 H 1.08996 * 109.47326 * 311.66242 * 18 17 16 48 48 H 1.09003 * 109.46623 * 65.26622 * 19 17 16 49 49 H 1.08994 * 109.47344 * 185.26961 * 19 17 16 50 50 H 1.09003 * 109.47330 * 305.27303 * 19 17 16 51 51 H 0.96992 * 119.99989 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3907 2.1233 -1.0828 5 7 2.3792 1.7126 -2.4063 6 6 2.9035 2.7635 -3.2879 7 6 3.0122 2.2255 -4.7165 8 6 1.6286 1.7759 -5.1940 9 8 0.7439 2.8979 -5.2186 10 6 1.7408 1.1823 -6.5997 11 8 0.4495 0.7603 -7.0430 12 6 1.0837 0.7157 -4.2328 13 6 1.0317 1.2982 -2.8171 14 7 2.7668 3.2975 -0.6336 15 7 2.6446 3.3354 0.6452 16 6 2.1961 2.1939 1.0852 17 6 1.9245 1.8356 2.5235 18 6 0.4985 1.2967 2.6543 19 6 2.9180 0.7648 2.9788 20 6 2.0787 3.0626 3.3847 21 1 2.3470 4.0073 2.9355 22 6 1.8773 2.9791 4.7461 23 7 1.5501 1.8287 5.2931 24 14 2.0691 4.4999 5.8137 25 1 0.7644 5.2018 5.9143 26 1 2.5213 4.0988 7.1701 27 1 3.0741 5.4083 5.2053 28 1 -0.3633 0.3974 -0.9477 29 1 -0.3633 -1.0195 0.1296 30 1 -0.3633 0.6220 0.8180 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8895 3.0713 -2.9397 34 1 2.2293 3.6199 -3.2727 35 1 3.6968 1.3775 -4.7349 36 1 3.3866 3.0105 -5.3735 37 1 -0.1530 2.6852 -5.5106 38 1 2.1308 1.9368 -7.2827 39 1 2.4157 0.3265 -6.5799 40 1 0.4451 0.3725 -7.9289 41 1 0.0812 0.4228 -4.5445 42 1 1.7380 -0.1559 -4.2436 43 1 0.6582 0.5417 -2.1270 44 1 0.3665 2.1616 -2.8043 45 1 0.4419 0.3056 2.2042 46 1 0.2294 1.2328 3.7086 47 1 -0.1918 1.9678 2.1432 48 1 3.9261 1.1793 2.9745 49 1 2.6636 0.4382 3.9870 50 1 2.8721 -0.0860 2.2989 51 1 1.4087 1.7699 6.2509 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646706933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:34 Heat of formation + Delta-G solvation = -0.773135 kcal Electronic energy + Delta-G solvation = -31925.695676 eV Core-core repulsion = 27862.304121 eV Total energy + Delta-G solvation = -4063.391555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29367 -39.99565 -37.34358 -36.14910 -35.85057 -34.66610 -32.48148 -31.19130 -31.07436 -30.26217 -28.50981 -26.74256 -26.00059 -25.09994 -23.69914 -23.64427 -22.67855 -21.45979 -20.71235 -19.80125 -18.93596 -17.84222 -17.22741 -16.73823 -16.06498 -15.85268 -15.45670 -15.30825 -15.15786 -15.00033 -14.62627 -14.34705 -14.06484 -13.74639 -13.32157 -12.92430 -12.87172 -12.73000 -12.69721 -12.39697 -12.05951 -11.94325 -11.78021 -11.51062 -11.41527 -11.36067 -11.29009 -10.93190 -10.73850 -10.68645 -10.52624 -10.45357 -10.34475 -10.15925 -9.98967 -9.93848 -9.89786 -9.68878 -9.48235 -9.10575 -8.69780 -8.33254 -7.54761 -5.99694 -4.05063 2.51608 2.87780 3.36414 3.42376 3.51173 3.65179 3.71746 3.90370 4.06724 4.41551 4.45313 4.47759 4.71352 4.86332 4.90439 5.01636 5.06036 5.17070 5.22654 5.28033 5.30064 5.36651 5.38743 5.44951 5.49539 5.59212 5.73231 5.75286 5.79821 5.84321 5.89852 6.00900 6.12783 6.27040 6.31188 6.52243 6.62068 6.70933 6.72033 6.76213 6.98341 7.09287 7.16444 7.31114 7.38479 7.46547 7.66851 7.86883 7.87437 8.13427 8.36397 9.02423 9.58222 9.74373 11.03743 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.002962 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.468918 B = 9450.464086 C = 9995.317018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.105 3.895 3 N -0.482 5.482 4 C 0.320 3.680 5 N -0.448 5.448 6 C 0.079 3.921 7 C -0.103 4.103 8 C 0.135 3.865 9 O -0.552 6.552 10 C 0.051 3.949 11 O -0.573 6.573 12 C -0.134 4.134 13 C 0.044 3.956 14 N -0.330 5.330 15 N -0.288 5.288 16 C 0.238 3.762 17 C 0.148 3.852 18 C -0.143 4.143 19 C -0.129 4.129 20 C -0.489 4.489 21 H 0.076 0.924 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.899 3.101 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.272 1.272 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.380 0.620 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.382 0.618 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.026 0.974 46 H 0.099 0.901 47 H 0.026 0.974 48 H 0.035 0.965 49 H 0.095 0.905 50 H 0.008 0.992 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 -8.768 -22.073 23.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.018 4.018 3 N -0.178 5.178 4 C -0.036 4.036 5 N -0.173 5.173 6 C -0.048 4.048 7 C -0.141 4.141 8 C 0.094 3.906 9 O -0.358 6.358 10 C -0.028 4.028 11 O -0.379 6.379 12 C -0.172 4.172 13 C -0.083 4.083 14 N -0.175 5.175 15 N -0.124 5.124 16 C -0.030 4.030 17 C 0.145 3.855 18 C -0.201 4.201 19 C -0.187 4.187 20 C -0.528 4.528 21 H 0.095 0.905 22 C -0.139 4.139 23 N -0.535 5.535 24 Si 0.727 3.273 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.196 1.196 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.228 0.772 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.230 0.770 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.044 0.956 46 H 0.118 0.882 47 H 0.045 0.955 48 H 0.054 0.946 49 H 0.113 0.887 50 H 0.026 0.974 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.158 -7.267 -21.170 22.412 hybrid contribution -1.099 -0.640 -0.319 1.311 sum -2.256 -7.907 -21.489 23.008 Atomic orbital electron populations 1.22799 0.94667 1.03829 1.04044 1.21857 0.95390 0.80135 1.04454 1.46317 1.51760 1.13396 1.06342 1.22393 1.04693 0.89450 0.87111 1.58648 1.22976 1.38689 0.96953 1.21844 1.01760 0.91569 0.89611 1.21626 0.93853 1.02280 0.96324 1.21293 0.91483 0.86226 0.91621 1.86534 1.24899 1.34139 1.90218 1.22943 0.85060 0.98406 0.96346 1.86382 1.30166 1.83354 1.38033 1.22208 1.02661 0.98557 0.93751 1.22564 0.88175 1.00745 0.96865 1.74537 1.23413 1.14225 1.05293 1.74050 1.18396 1.18971 1.00984 1.26081 0.98263 0.86327 0.92304 1.16868 0.92957 0.96144 0.79543 1.22231 0.96817 0.96110 1.04926 1.21905 0.98533 0.95626 1.02673 1.21106 1.45889 0.94699 0.91092 0.90538 1.24866 0.94998 0.96255 0.97738 1.69789 1.48495 1.23821 1.11411 0.86458 0.78525 0.83086 0.79240 1.20789 1.21397 1.19626 0.92315 0.90725 0.88850 0.89485 0.88138 0.89217 0.92088 0.89593 0.89962 0.77177 0.92737 0.92663 0.77042 0.90023 0.90256 0.89206 0.93151 0.95554 0.88235 0.95527 0.94625 0.88682 0.97362 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.58 9.01 37.16 0.33 -2.24 16 2 C 0.10 1.56 5.02 -4.04 -0.02 1.54 16 3 N -0.48 -9.30 2.81 -114.09 -0.32 -9.62 16 4 C 0.32 6.22 7.17 -318.88 -2.29 3.93 16 5 N -0.45 -6.77 4.66 -174.46 -0.81 -7.59 16 6 C 0.08 1.11 4.73 -3.83 -0.02 1.09 16 7 C -0.10 -1.03 5.11 -26.65 -0.14 -1.16 16 8 C 0.13 1.26 0.80 -90.50 -0.07 1.19 16 9 O -0.55 -6.04 11.84 -44.77 -0.53 -6.57 16 10 C 0.05 0.35 6.17 37.16 0.23 0.58 16 11 O -0.57 -3.75 12.54 -44.77 -0.56 -4.32 16 12 C -0.13 -1.29 4.91 -26.58 -0.13 -1.42 16 13 C 0.04 0.56 5.01 -3.76 -0.02 0.54 16 14 N -0.33 -7.62 11.26 30.31 0.34 -7.27 16 15 N -0.29 -7.36 11.01 32.99 0.36 -7.00 16 16 C 0.24 5.56 6.31 -154.01 -0.97 4.59 16 17 C 0.15 3.56 0.52 -156.81 -0.08 3.48 16 18 C -0.14 -3.17 6.64 37.16 0.25 -2.92 16 19 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 20 C -0.49 -13.39 7.91 -34.44 -0.27 -13.67 16 21 H 0.08 2.24 6.96 -52.49 -0.37 1.87 16 22 C 0.06 1.64 5.10 -17.82 -0.09 1.55 16 23 N -0.90 -23.72 9.40 55.43 0.52 -23.20 16 24 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 28 H 0.06 0.72 5.70 -51.93 -0.30 0.43 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.47 4.35 -51.93 -0.23 1.25 16 31 H 0.09 1.10 7.45 -51.93 -0.39 0.72 16 32 H 0.10 1.53 5.21 -51.93 -0.27 1.26 16 33 H 0.09 1.34 7.95 -51.93 -0.41 0.93 16 34 H 0.06 0.98 7.76 -51.93 -0.40 0.58 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.38 3.30 8.57 45.56 0.39 3.69 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 0.90 9.12 45.56 0.42 1.32 16 41 H 0.08 0.73 7.77 -51.93 -0.40 0.33 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.11 3.08 -51.93 -0.16 0.95 16 44 H 0.05 0.73 7.76 -51.93 -0.40 0.33 16 45 H 0.03 0.49 4.65 -51.93 -0.24 0.25 16 46 H 0.10 2.44 5.84 -51.93 -0.30 2.14 16 47 H 0.03 0.59 7.42 -51.93 -0.39 0.20 16 48 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.09 2.33 6.23 -51.93 -0.32 2.00 16 50 H 0.01 0.15 5.78 -51.93 -0.30 -0.15 16 51 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -32.49 373.78 -9.54 -42.04 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.17 Total: 6.99 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -2.99 Total: -5.60 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.09 Total: -54.68 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -1.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.49 -9.54 -42.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646706933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.264 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds