Wall clock time and date at job start Tue Mar 31 2020 21:23:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46497 * 109.46975 * 2 1
4 4 C 1.36737 * 127.13477 * 83.81030 * 3 2 1
5 5 C 1.50700 * 126.35031 * 359.97438 * 4 3 2
6 6 C 1.53004 * 109.47045 * 95.33331 * 5 4 3
7 7 H 1.08994 * 109.47245 * 57.47930 * 6 5 4
8 8 O 1.42897 * 109.46775 * 297.47799 * 6 5 4
9 9 C 1.50701 * 109.46994 * 177.47897 * 6 5 4
10 10 H 1.07997 * 120.00279 * 0.02562 * 9 6 5
11 11 C 1.37876 * 119.99750 * 179.97438 * 9 6 5
12 12 N 1.31522 * 119.99712 * 180.02562 * 11 9 6
13 13 Si 1.86798 * 120.00183 * 0.02562 * 11 9 6
14 14 H 1.48502 * 109.47117 * 89.99459 * 13 11 9
15 15 H 1.48500 * 109.46969 * 209.99523 * 13 11 9
16 16 H 1.48497 * 109.46826 * 329.99581 * 13 11 9
17 17 N 1.30294 * 107.30503 * 180.02562 * 4 3 2
18 18 N 1.28529 * 110.05217 * 359.72311 * 17 4 3
19 19 C 1.31218 * 109.85930 * 0.45561 * 18 17 4
20 20 N 1.38573 * 126.47246 * 179.82194 * 19 18 17
21 21 C 1.46849 * 111.00060 * 233.67700 * 20 19 18
22 22 C 1.53040 * 109.52474 * 174.16066 * 21 20 19
23 23 C 1.53121 * 109.27773 * 59.18012 * 22 21 20
24 24 H 1.08997 * 109.57384 * 62.28326 * 23 22 21
25 25 C 1.53001 * 109.52071 * 182.43997 * 23 22 21
26 26 C 1.53115 * 109.15745 * 302.34387 * 23 22 21
27 27 H 1.09002 * 109.50158 * 177.59763 * 26 23 22
28 28 O 1.42900 * 109.50708 * 297.71299 * 26 23 22
29 29 C 1.42896 * 114.00117 * 210.00319 * 28 26 23
30 30 C 1.46847 * 111.00141 * 109.46770 * 20 19 18
31 31 H 1.08995 * 109.47534 * 301.46161 * 1 2 3
32 32 H 1.09003 * 109.46635 * 61.46278 * 1 2 3
33 33 H 1.09003 * 109.47118 * 181.45563 * 1 2 3
34 34 H 1.08999 * 109.47130 * 239.99843 * 2 1 3
35 35 H 1.09005 * 109.46696 * 119.99917 * 2 1 3
36 36 H 1.09001 * 109.47033 * 215.33196 * 5 4 3
37 37 H 1.08998 * 109.47100 * 335.33031 * 5 4 3
38 38 H 0.96704 * 114.00506 * 304.12984 * 8 6 5
39 39 H 0.97001 * 119.99782 * 180.02562 * 12 11 9
40 40 H 1.09000 * 109.46318 * 54.14245 * 21 20 19
41 41 H 1.08997 * 109.46275 * 294.17561 * 21 20 19
42 42 H 1.09002 * 109.50001 * 299.23950 * 22 21 20
43 43 H 1.08999 * 109.53616 * 179.13923 * 22 21 20
44 44 H 1.09002 * 109.46778 * 179.68292 * 25 23 22
45 45 H 1.08994 * 109.46886 * 299.68429 * 25 23 22
46 46 H 1.09004 * 109.47031 * 59.68339 * 25 23 22
47 47 H 1.09007 * 109.47075 * 300.00060 * 29 28 26
48 48 H 1.09001 * 109.47257 * 59.99896 * 29 28 26
49 49 H 1.08997 * 109.47460 * 180.02562 * 29 28 26
50 50 H 1.09002 * 109.46279 * 65.82431 * 30 20 19
51 51 H 1.08994 * 109.46013 * 305.85158 * 30 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1826 2.1986 1.0837
5 6 1.8925 1.8469 2.5201
6 6 3.1793 1.3740 3.1993
7 1 3.9375 2.1534 3.1240
8 8 3.6496 0.1881 2.5555
9 6 2.9025 1.0812 4.6514
10 1 1.9081 1.2182 5.0500
11 6 3.9185 0.6373 5.4710
12 7 3.6768 0.3813 6.7382
13 14 5.6383 0.3996 4.7816
14 1 6.4083 1.6610 4.9264
15 1 6.3240 -0.6872 5.5259
16 1 5.5495 0.0359 3.3446
17 7 2.6356 3.3385 0.6443
18 7 2.7730 3.2952 -0.6329
19 6 2.4030 2.1189 -1.0815
20 7 2.4077 1.7026 -2.4032
21 6 1.0893 1.1906 -2.7983
22 6 1.0902 0.8772 -4.2963
23 6 2.1730 -0.1637 -4.5943
24 1 1.9465 -1.0884 -4.0636
25 6 2.2198 -0.4362 -6.0991
26 6 3.5289 0.3745 -4.1293
27 1 4.2975 -0.3794 -4.2998
28 8 3.8495 1.5582 -4.8629
29 6 5.2513 1.7674 -5.0448
30 6 3.4573 0.7024 -2.6361
31 1 -0.3634 0.5363 0.8765
32 1 -0.3633 0.4910 -0.9029
33 1 -0.3633 -1.0274 0.0261
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8901
36 1 1.5094 2.7255 3.0391
37 1 1.1489 1.0507 2.5561
38 1 3.0008 -0.5285 2.5284
39 1 4.3916 0.0694 7.3149
40 1 0.3290 1.9419 -2.5849
41 1 0.8694 0.2822 -2.2374
42 1 1.2964 1.7880 -4.8584
43 1 0.1165 0.4828 -4.5868
44 1 2.9946 -1.1730 -6.3110
45 1 1.2542 -0.8191 -6.4292
46 1 2.4440 0.4895 -6.6292
47 1 5.7355 1.8510 -4.0717
48 1 5.6765 0.9254 -5.5910
49 1 5.4114 2.6856 -5.6099
50 1 3.2263 -0.2037 -2.0760
51 1 4.4169 1.0992 -2.3051
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001646712015.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:23:00
Heat of formation + Delta-G solvation = -5.726484 kcal
Electronic energy + Delta-G solvation = -31810.782655 eV
Core-core repulsion = 27747.176307 eV
Total energy + Delta-G solvation = -4063.606348 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.76586 -40.05447 -37.21092 -36.69841 -35.40461 -34.49370 -32.35280 -31.56208
-30.88168 -30.44262 -29.00080 -27.51261 -26.67592 -25.63596 -24.14369 -23.40156
-22.85185 -21.64493 -20.87629 -20.20609 -19.83076 -17.77982 -17.33369 -16.51507
-16.45014 -15.91405 -15.71232 -15.47343 -14.98005 -14.81483 -14.61379 -14.43237
-14.28410 -14.09783 -13.81399 -13.55162 -13.29979 -13.20078 -13.08724 -12.78925
-12.63998 -12.43879 -12.23562 -12.04961 -11.77744 -11.64360 -11.46239 -11.41713
-11.14774 -11.07607 -11.01795 -10.97566 -10.60293 -10.47431 -10.26142 -10.10011
-9.88357 -9.72693 -9.19630 -8.93812 -8.75662 -8.63055 -8.26281 -6.20229
-4.32728 2.01239 2.55696 3.21413 3.27064 3.35999 3.45084 3.61183
3.68983 4.26852 4.30992 4.37219 4.47738 4.48332 4.70361 4.74234
4.78981 4.89434 4.91617 4.97382 5.02689 5.06876 5.12947 5.16362
5.20636 5.29070 5.30961 5.31446 5.39400 5.44127 5.46961 5.54899
5.58779 5.63474 5.68171 5.70692 5.84194 5.88973 5.96247 6.05492
6.11717 6.17690 6.18821 6.47748 6.55114 6.75568 7.03333 7.21180
7.39104 7.48917 8.17488 8.67867 8.85566 9.18300 9.43828 10.89889
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.017057 B = 0.003230 C = 0.003066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1641.199141 B = 8667.580436 C = 9130.990598
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.097 3.903
3 N -0.493 5.493
4 C 0.220 3.780
5 C -0.055 4.055
6 C 0.202 3.798
7 H 0.065 0.935
8 O -0.577 6.577
9 C -0.564 4.564
10 H 0.076 0.924
11 C 0.087 3.913
12 N -0.889 5.889
13 Si 0.871 3.129
14 H -0.285 1.285
15 H -0.295 1.295
16 H -0.221 1.221
17 N -0.301 5.301
18 N -0.266 5.266
19 C 0.320 3.680
20 N -0.422 5.422
21 C 0.047 3.953
22 C -0.106 4.106
23 C -0.092 4.092
24 H 0.078 0.922
25 C -0.142 4.142
26 C 0.100 3.900
27 H 0.069 0.931
28 O -0.360 6.360
29 C 0.030 3.970
30 C 0.034 3.966
31 H 0.070 0.930
32 H 0.064 0.936
33 H 0.079 0.921
34 H 0.086 0.914
35 H 0.104 0.896
36 H 0.101 0.899
37 H 0.076 0.924
38 H 0.346 0.654
39 H 0.266 0.734
40 H 0.082 0.918
41 H 0.047 0.953
42 H 0.085 0.915
43 H 0.072 0.928
44 H 0.051 0.949
45 H 0.055 0.945
46 H 0.066 0.934
47 H 0.041 0.959
48 H 0.036 0.964
49 H 0.086 0.914
50 H 0.048 0.952
51 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.369 -6.285 -25.144 26.468
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.027 4.027
3 N -0.190 5.190
4 C -0.048 4.048
5 C -0.095 4.095
6 C 0.143 3.857
7 H 0.082 0.918
8 O -0.383 6.383
9 C -0.601 4.601
10 H 0.094 0.906
11 C -0.118 4.118
12 N -0.526 5.526
13 Si 0.698 3.302
14 H -0.212 1.212
15 H -0.222 1.222
16 H -0.143 1.143
17 N -0.140 5.140
18 N -0.107 5.107
19 C -0.034 4.034
20 N -0.146 5.146
21 C -0.080 4.080
22 C -0.144 4.144
23 C -0.110 4.110
24 H 0.096 0.904
25 C -0.200 4.200
26 C 0.041 3.959
27 H 0.087 0.913
28 O -0.278 6.278
29 C -0.066 4.066
30 C -0.094 4.094
31 H 0.089 0.911
32 H 0.083 0.917
33 H 0.098 0.902
34 H 0.104 0.896
35 H 0.122 0.878
36 H 0.119 0.881
37 H 0.094 0.906
38 H 0.192 0.808
39 H 0.075 0.925
40 H 0.100 0.900
41 H 0.065 0.935
42 H 0.104 0.896
43 H 0.090 0.910
44 H 0.070 0.930
45 H 0.074 0.926
46 H 0.085 0.915
47 H 0.060 0.940
48 H 0.055 0.945
49 H 0.104 0.896
50 H 0.066 0.934
51 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -4.292 -4.006 -25.466 26.134
hybrid contribution 0.049 -2.593 0.686 2.683
sum -4.243 -6.599 -24.779 25.992
Atomic orbital electron populations
1.22316 0.93895 1.03544 1.03578 1.22005 0.95693 0.80082 1.04883
1.47337 1.50259 1.13337 1.08076 1.25210 0.99744 0.87618 0.92183
1.20969 1.01699 1.02983 0.83830 1.19822 0.90169 0.84563 0.91100
0.91755 1.86819 1.44148 1.25497 1.81873 1.21402 0.98505 1.47998
0.92235 0.90624 1.24954 0.99652 0.92923 0.94240 1.69947 1.33698
1.43750 1.05198 0.87012 0.83066 0.77678 0.82486 1.21161 1.22209
1.14345 1.74207 1.18473 1.18969 1.02393 1.74430 1.18219 1.14692
1.03336 1.22873 1.04809 0.90716 0.85051 1.58794 1.05427 1.39739
1.10654 1.22529 0.89338 0.99123 0.96990 1.21588 0.98111 1.00127
0.94576 1.21331 0.93960 0.98119 0.97618 0.90362 1.21727 1.01422
1.02112 0.94692 1.22146 0.96987 0.87595 0.89147 0.91267 1.87990
1.22836 1.42734 1.74206 1.22786 0.82303 1.01168 1.00375 1.22808
0.95740 0.93397 0.97442 0.91088 0.91747 0.90188 0.89562 0.87816
0.88066 0.90580 0.80774 0.92452 0.90005 0.93453 0.89594 0.90968
0.92973 0.92601 0.91483 0.94044 0.94505 0.89597 0.93365 0.89637
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.58 9.76 37.16 0.36 -1.21 16
2 C 0.10 1.07 5.48 -4.04 -0.02 1.05 16
3 N -0.49 -7.55 2.80 -114.09 -0.32 -7.87 16
4 C 0.22 4.10 7.03 -154.02 -1.08 3.02 16
5 C -0.05 -1.02 5.19 -27.88 -0.14 -1.16 16
6 C 0.20 4.53 2.33 -27.88 -0.06 4.46 16
7 H 0.06 1.60 7.57 -51.93 -0.39 1.21 16
8 O -0.58 -12.17 9.56 -35.23 -0.34 -12.51 16
9 C -0.56 -14.93 9.37 -34.44 -0.32 -15.25 16
10 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16
11 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16
12 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16
13 Si 0.87 21.67 26.99 -169.99 -4.59 17.08 16
14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
15 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16
16 H -0.22 -5.38 5.31 56.52 0.30 -5.08 16
17 N -0.30 -6.40 12.18 32.99 0.40 -6.00 16
18 N -0.27 -5.42 12.23 30.31 0.37 -5.05 16
19 C 0.32 5.30 6.66 -318.89 -2.12 3.18 16
20 N -0.42 -5.59 4.57 -174.55 -0.80 -6.39 16
21 C 0.05 0.48 4.22 -3.83 -0.02 0.46 16
22 C -0.11 -0.87 5.22 -26.65 -0.14 -1.01 16
23 C -0.09 -0.67 2.62 -90.50 -0.24 -0.91 16
24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
25 C -0.14 -0.91 9.03 37.16 0.34 -0.57 16
26 C 0.10 0.90 2.41 -26.65 -0.06 0.84 16
27 H 0.07 0.52 7.79 -51.93 -0.40 0.12 16
28 O -0.36 -3.81 8.91 -35.23 -0.31 -4.12 16
29 C 0.03 0.26 10.82 101.05 1.09 1.35 16
30 C 0.03 0.39 4.89 -3.83 -0.02 0.37 16
31 H 0.07 0.73 7.83 -51.93 -0.41 0.33 16
32 H 0.06 0.56 6.05 -51.93 -0.31 0.25 16
33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
34 H 0.09 0.81 4.61 -51.93 -0.24 0.57 16
35 H 0.10 1.16 6.30 -51.93 -0.33 0.84 16
36 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16
37 H 0.08 1.24 7.54 -51.93 -0.39 0.85 16
38 H 0.35 6.10 7.58 45.56 0.35 6.44 16
39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
40 H 0.08 0.90 8.08 -51.93 -0.42 0.49 16
41 H 0.05 0.42 4.03 -51.93 -0.21 0.21 16
42 H 0.09 0.85 7.80 -51.93 -0.40 0.45 16
43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16
44 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
45 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16
46 H 0.07 0.50 7.63 -51.93 -0.40 0.11 16
47 H 0.04 0.38 7.88 -51.92 -0.41 -0.03 16
48 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16
49 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
50 H 0.05 0.50 6.02 -51.93 -0.31 0.18 16
51 H 0.09 1.13 7.84 -51.93 -0.41 0.73 16
LS Contribution 387.15 15.07 5.83 5.83
Total: -1.00 -34.24 387.15 -9.24 -43.48
By element:
Atomic # 1 Polarization: 11.97 SS G_CDS: -7.72 Total: 4.24 kcal
Atomic # 6 Polarization: -0.50 SS G_CDS: -2.54 Total: -3.04 kcal
Atomic # 7 Polarization: -51.40 SS G_CDS: 0.43 Total: -50.97 kcal
Atomic # 8 Polarization: -15.98 SS G_CDS: -0.65 Total: -16.63 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -4.59 Total: 17.08 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -34.24 -9.24 -43.48 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001646712015.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.754 kcal
(2) G-P(sol) polarization free energy of solvation -34.237 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.517 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.726 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds