Wall clock time and date at job start Tue Mar 31 2020 21:22:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46497 * 109.46975 * 2 1
4 4 C 1.36737 * 127.13477 * 83.81030 * 3 2 1
5 5 C 1.50700 * 126.35031 * 359.97438 * 4 3 2
6 6 C 1.53004 * 109.47045 * 95.33331 * 5 4 3
7 7 H 1.08994 * 109.47245 * 57.47930 * 6 5 4
8 8 O 1.42897 * 109.46775 * 297.47799 * 6 5 4
9 9 C 1.50701 * 109.46994 * 177.47897 * 6 5 4
10 10 H 1.07997 * 120.00279 * 0.02562 * 9 6 5
11 11 C 1.37876 * 119.99750 * 179.97438 * 9 6 5
12 12 N 1.31522 * 119.99712 * 180.02562 * 11 9 6
13 13 Si 1.86798 * 120.00183 * 0.02562 * 11 9 6
14 14 H 1.48502 * 109.47117 * 89.99459 * 13 11 9
15 15 H 1.48500 * 109.46969 * 209.99523 * 13 11 9
16 16 H 1.48497 * 109.46826 * 329.99581 * 13 11 9
17 17 N 1.30294 * 107.30503 * 180.02562 * 4 3 2
18 18 N 1.28529 * 110.05217 * 359.72311 * 17 4 3
19 19 C 1.31218 * 109.85930 * 0.45561 * 18 17 4
20 20 N 1.38573 * 126.47246 * 179.82194 * 19 18 17
21 21 C 1.46849 * 111.00060 * 233.67700 * 20 19 18
22 22 C 1.53040 * 109.52474 * 174.16066 * 21 20 19
23 23 C 1.53121 * 109.27773 * 59.18012 * 22 21 20
24 24 H 1.08997 * 109.57384 * 62.28326 * 23 22 21
25 25 C 1.53001 * 109.52071 * 182.43997 * 23 22 21
26 26 C 1.53115 * 109.15745 * 302.34387 * 23 22 21
27 27 H 1.09002 * 109.50158 * 177.59763 * 26 23 22
28 28 O 1.42900 * 109.50708 * 297.71299 * 26 23 22
29 29 C 1.42896 * 114.00117 * 210.00319 * 28 26 23
30 30 C 1.46847 * 111.00141 * 109.46770 * 20 19 18
31 31 H 1.08995 * 109.47534 * 301.46161 * 1 2 3
32 32 H 1.09003 * 109.46635 * 61.46278 * 1 2 3
33 33 H 1.09003 * 109.47118 * 181.45563 * 1 2 3
34 34 H 1.08999 * 109.47130 * 239.99843 * 2 1 3
35 35 H 1.09005 * 109.46696 * 119.99917 * 2 1 3
36 36 H 1.09001 * 109.47033 * 215.33196 * 5 4 3
37 37 H 1.08998 * 109.47100 * 335.33031 * 5 4 3
38 38 H 0.96704 * 114.00506 * 304.12984 * 8 6 5
39 39 H 0.97001 * 119.99782 * 180.02562 * 12 11 9
40 40 H 1.09000 * 109.46318 * 54.14245 * 21 20 19
41 41 H 1.08997 * 109.46275 * 294.17561 * 21 20 19
42 42 H 1.09002 * 109.50001 * 299.23950 * 22 21 20
43 43 H 1.08999 * 109.53616 * 179.13923 * 22 21 20
44 44 H 1.09002 * 109.46778 * 179.68292 * 25 23 22
45 45 H 1.08994 * 109.46886 * 299.68429 * 25 23 22
46 46 H 1.09004 * 109.47031 * 59.68339 * 25 23 22
47 47 H 1.09007 * 109.47075 * 300.00060 * 29 28 26
48 48 H 1.09001 * 109.47257 * 59.99896 * 29 28 26
49 49 H 1.08997 * 109.47460 * 180.02562 * 29 28 26
50 50 H 1.09002 * 109.46279 * 65.82431 * 30 20 19
51 51 H 1.08994 * 109.46013 * 305.85158 * 30 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1826 2.1986 1.0837
5 6 1.8925 1.8469 2.5201
6 6 3.1793 1.3740 3.1993
7 1 3.9375 2.1534 3.1240
8 8 3.6496 0.1881 2.5555
9 6 2.9025 1.0812 4.6514
10 1 1.9081 1.2182 5.0500
11 6 3.9185 0.6373 5.4710
12 7 3.6768 0.3813 6.7382
13 14 5.6383 0.3996 4.7816
14 1 6.4083 1.6610 4.9264
15 1 6.3240 -0.6872 5.5259
16 1 5.5495 0.0359 3.3446
17 7 2.6356 3.3385 0.6443
18 7 2.7730 3.2952 -0.6329
19 6 2.4030 2.1189 -1.0815
20 7 2.4077 1.7026 -2.4032
21 6 1.0893 1.1906 -2.7983
22 6 1.0902 0.8772 -4.2963
23 6 2.1730 -0.1637 -4.5943
24 1 1.9465 -1.0884 -4.0636
25 6 2.2198 -0.4362 -6.0991
26 6 3.5289 0.3745 -4.1293
27 1 4.2975 -0.3794 -4.2998
28 8 3.8495 1.5582 -4.8629
29 6 5.2513 1.7674 -5.0448
30 6 3.4573 0.7024 -2.6361
31 1 -0.3634 0.5363 0.8765
32 1 -0.3633 0.4910 -0.9029
33 1 -0.3633 -1.0274 0.0261
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8901
36 1 1.5094 2.7255 3.0391
37 1 1.1489 1.0507 2.5561
38 1 3.0008 -0.5285 2.5284
39 1 4.3916 0.0694 7.3149
40 1 0.3290 1.9419 -2.5849
41 1 0.8694 0.2822 -2.2374
42 1 1.2964 1.7880 -4.8584
43 1 0.1165 0.4828 -4.5868
44 1 2.9946 -1.1730 -6.3110
45 1 1.2542 -0.8191 -6.4292
46 1 2.4440 0.4895 -6.6292
47 1 5.7355 1.8510 -4.0717
48 1 5.6765 0.9254 -5.5910
49 1 5.4114 2.6856 -5.6099
50 1 3.2263 -0.2037 -2.0760
51 1 4.4169 1.0992 -2.3051
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001646712015.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:22:59
Heat of formation + Delta-G solvation = -29.053386 kcal
Electronic energy + Delta-G solvation = -31811.794185 eV
Core-core repulsion = 27747.176307 eV
Total energy + Delta-G solvation = -4064.617878 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-44.08134 -40.87157 -38.44406 -38.07418 -36.44571 -35.32163 -34.45909 -33.02944
-31.76496 -31.32494 -30.33828 -28.60619 -27.54551 -27.18229 -25.11604 -24.17750
-23.62688 -23.33691 -22.06951 -21.47159 -20.69507 -19.50516 -18.53976 -17.65025
-17.40106 -16.94359 -16.87549 -16.62784 -16.43823 -16.05652 -15.92866 -15.68373
-15.35516 -15.06566 -14.92664 -14.62390 -14.47073 -14.20088 -14.08924 -13.83942
-13.67349 -13.42927 -13.32010 -13.02619 -12.90455 -12.79082 -12.69977 -12.57442
-12.39114 -12.31507 -12.19155 -12.07177 -11.77646 -11.62306 -11.39069 -11.24757
-11.23041 -11.04985 -10.85941 -10.54572 -10.45109 -9.91854 -9.73127 -8.37263
-6.51106 0.72312 1.36499 1.37891 1.42232 1.69284 1.80837 2.28846
2.40253 2.91686 2.99997 3.37301 3.47947 3.56585 3.62203 3.82004
3.88474 3.93456 3.94739 4.01996 4.16769 4.19353 4.23960 4.30216
4.35897 4.39823 4.48200 4.52338 4.57158 4.61238 4.65892 4.72425
4.74638 4.82260 4.86173 4.89000 4.91122 4.96780 5.05457 5.11953
5.15968 5.19069 5.34443 5.39680 5.41602 5.54263 5.55619 5.70692
6.06234 6.24886 6.34807 6.61250 7.11339 7.30724 7.79632 8.76229
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.017057 B = 0.003230 C = 0.003066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1641.199141 B = 8667.580436 C = 9130.990598
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.085 3.915
3 N -0.482 5.482
4 C 0.211 3.789
5 C -0.040 4.040
6 C 0.215 3.785
7 H 0.038 0.962
8 O -0.579 6.579
9 C -0.557 4.557
10 H 0.052 0.948
11 C 0.037 3.963
12 N -0.933 5.933
13 Si 0.929 3.071
14 H -0.296 1.296
15 H -0.293 1.293
16 H -0.210 1.210
17 N -0.340 5.340
18 N -0.318 5.318
19 C 0.341 3.659
20 N -0.436 5.436
21 C 0.047 3.953
22 C -0.100 4.100
23 C -0.088 4.088
24 H 0.101 0.899
25 C -0.138 4.138
26 C 0.100 3.900
27 H 0.089 0.911
28 O -0.380 6.380
29 C 0.028 3.972
30 C 0.034 3.966
31 H 0.055 0.945
32 H 0.067 0.933
33 H 0.111 0.889
34 H 0.110 0.890
35 H 0.106 0.894
36 H 0.092 0.908
37 H 0.103 0.897
38 H 0.366 0.634
39 H 0.267 0.733
40 H 0.068 0.932
41 H 0.069 0.931
42 H 0.064 0.936
43 H 0.098 0.902
44 H 0.060 0.940
45 H 0.068 0.932
46 H 0.051 0.949
47 H 0.028 0.972
48 H 0.058 0.942
49 H 0.088 0.912
50 H 0.065 0.935
51 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.123 -9.152 -27.862 29.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.036 4.036
3 N -0.179 5.179
4 C -0.059 4.059
5 C -0.080 4.080
6 C 0.156 3.844
7 H 0.056 0.944
8 O -0.386 6.386
9 C -0.595 4.595
10 H 0.070 0.930
11 C -0.163 4.163
12 N -0.572 5.572
13 Si 0.755 3.245
14 H -0.223 1.223
15 H -0.220 1.220
16 H -0.132 1.132
17 N -0.180 5.180
18 N -0.159 5.159
19 C -0.015 4.015
20 N -0.161 5.161
21 C -0.080 4.080
22 C -0.138 4.138
23 C -0.107 4.107
24 H 0.119 0.881
25 C -0.195 4.195
26 C 0.041 3.959
27 H 0.107 0.893
28 O -0.298 6.298
29 C -0.068 4.068
30 C -0.093 4.093
31 H 0.074 0.926
32 H 0.086 0.914
33 H 0.130 0.870
34 H 0.128 0.872
35 H 0.124 0.876
36 H 0.111 0.889
37 H 0.121 0.879
38 H 0.215 0.785
39 H 0.076 0.924
40 H 0.087 0.913
41 H 0.087 0.913
42 H 0.082 0.918
43 H 0.116 0.884
44 H 0.079 0.921
45 H 0.087 0.913
46 H 0.070 0.930
47 H 0.046 0.954
48 H 0.076 0.924
49 H 0.107 0.893
50 H 0.083 0.917
51 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -5.068 -6.905 -28.209 29.481
hybrid contribution 0.219 -1.714 1.440 2.249
sum -4.849 -8.618 -26.769 28.537
Atomic orbital electron populations
1.22312 0.91979 1.05403 1.03073 1.22448 0.97284 0.77725 1.06163
1.47529 1.49266 1.14435 1.06646 1.24962 1.00352 0.87914 0.92639
1.20687 1.00203 1.03414 0.83737 1.19411 0.91143 0.84515 0.89330
0.94388 1.86723 1.45037 1.25665 1.81196 1.21688 0.97224 1.46297
0.94289 0.92984 1.25676 1.02973 0.93234 0.94435 1.70050 1.34777
1.45871 1.06499 0.86126 0.79128 0.76940 0.82316 1.22282 1.21997
1.13177 1.74083 1.19775 1.20882 1.03251 1.74309 1.20977 1.17366
1.03265 1.23185 1.02012 0.89946 0.86387 1.58965 1.07517 1.41310
1.08296 1.22656 0.87223 0.99382 0.98688 1.21569 0.99914 0.99730
0.92548 1.21385 0.92283 0.98432 0.98558 0.88098 1.21677 1.02495
1.01646 0.93661 1.22312 0.98813 0.87510 0.87260 0.89306 1.87972
1.23762 1.43779 1.74328 1.22860 0.81641 1.02348 0.99991 1.22886
0.93820 0.93067 0.99576 0.92550 0.91412 0.87013 0.87233 0.87571
0.88932 0.87885 0.78549 0.92373 0.91314 0.91344 0.91757 0.88367
0.92102 0.91278 0.93014 0.95358 0.92360 0.89304 0.91718 0.92317
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.43 9.76 71.98 0.70 -1.73 16
2 C 0.08 1.59 5.48 86.38 0.47 2.07 16
3 N -0.48 -14.05 2.80 -514.86 -1.44 -15.50 16
4 C 0.21 7.79 7.03 137.64 0.97 8.76 16
5 C -0.04 -1.48 5.19 29.85 0.15 -1.33 16
6 C 0.21 9.55 2.33 29.85 0.07 9.62 16
7 H 0.04 1.92 7.57 -2.39 -0.02 1.90 16
8 O -0.58 -23.19 9.56 -148.98 -1.42 -24.61 16
9 C -0.56 -29.61 9.37 25.60 0.24 -29.37 16
10 H 0.05 2.97 7.99 -2.91 -0.02 2.94 16
11 C 0.04 2.10 5.47 84.65 0.46 2.57 16
12 N -0.93 -56.23 13.96 21.45 0.30 -55.93 16
13 Si 0.93 44.99 26.99 68.60 1.85 46.84 16
14 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16
15 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16
16 H -0.21 -9.67 5.31 99.48 0.53 -9.15 16
17 N -0.34 -14.84 12.18 -49.54 -0.60 -15.44 16
18 N -0.32 -13.29 12.23 -58.01 -0.71 -14.00 16
19 C 0.34 11.09 6.66 260.12 1.73 12.83 16
20 N -0.44 -10.98 4.57 -706.15 -3.23 -14.20 16
21 C 0.05 0.83 4.22 86.33 0.36 1.19 16
22 C -0.10 -1.33 5.22 30.65 0.16 -1.17 16
23 C -0.09 -0.96 2.62 -10.71 -0.03 -0.99 16
24 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16
25 C -0.14 -1.28 9.03 71.98 0.65 -0.63 16
26 C 0.10 1.53 2.41 30.65 0.07 1.61 16
27 H 0.09 1.04 7.79 -2.39 -0.02 1.02 16
28 O -0.38 -7.56 8.91 -148.98 -1.33 -8.89 16
29 C 0.03 0.46 10.82 113.37 1.23 1.68 16
30 C 0.03 0.71 4.89 86.33 0.42 1.13 16
31 H 0.06 1.00 7.83 -2.39 -0.02 0.99 16
32 H 0.07 0.94 6.05 -2.39 -0.01 0.93 16
33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16
34 H 0.11 1.55 4.61 -2.39 -0.01 1.54 16
35 H 0.11 1.98 6.30 -2.38 -0.02 1.97 16
36 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16
37 H 0.10 3.18 7.54 -2.39 -0.02 3.16 16
38 H 0.37 11.77 7.58 -74.05 -0.56 11.21 16
39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16
40 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16
41 H 0.07 0.92 4.03 -2.39 -0.01 0.91 16
42 H 0.06 1.17 7.80 -2.39 -0.02 1.15 16
43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16
44 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16
45 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16
46 H 0.05 0.65 7.63 -2.38 -0.02 0.64 16
47 H 0.03 0.52 7.88 -2.38 -0.02 0.50 16
48 H 0.06 0.68 8.09 -2.39 -0.02 0.66 16
49 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
50 H 0.06 1.10 6.02 -2.39 -0.01 1.09 16
51 H 0.06 1.53 7.84 -2.39 -0.02 1.51 16
Total: -1.00 -77.09 387.15 1.29 -75.80
By element:
Atomic # 1 Polarization: 19.49 SS G_CDS: 0.20 Total: 19.69 kcal
Atomic # 6 Polarization: -1.43 SS G_CDS: 7.67 Total: 6.24 kcal
Atomic # 7 Polarization: -109.38 SS G_CDS: -5.68 Total: -115.06 kcal
Atomic # 8 Polarization: -30.75 SS G_CDS: -2.75 Total: -33.50 kcal
Atomic # 14 Polarization: 44.99 SS G_CDS: 1.85 Total: 46.84 kcal
Total: -77.09 1.29 -75.80 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001646712015.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.744 kcal
(2) G-P(sol) polarization free energy of solvation -77.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.343 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.797 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.053 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds