Wall clock time and date at job start Tue Mar 31 2020 21:22:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46498 * 109.47348 * 2 1
4 4 C 1.36740 * 127.13770 * 269.14070 * 3 2 1
5 5 C 1.50702 * 126.34260 * 0.03591 * 4 3 2
6 6 C 1.53000 * 109.46911 * 270.25002 * 5 4 3
7 7 H 1.08999 * 109.47539 * 55.00245 * 6 5 4
8 8 O 1.42908 * 109.47173 * 295.00323 * 6 5 4
9 9 C 1.50704 * 109.47113 * 175.00311 * 6 5 4
10 10 H 1.08001 * 119.99720 * 0.02562 * 9 6 5
11 11 C 1.37876 * 120.00129 * 179.97438 * 9 6 5
12 12 N 1.31520 * 119.99762 * 0.02562 * 11 9 6
13 13 Si 1.86801 * 120.00116 * 180.02562 * 11 9 6
14 14 H 1.48502 * 109.46741 * 0.02562 * 13 11 9
15 15 H 1.48496 * 109.47041 * 120.00556 * 13 11 9
16 16 H 1.48498 * 109.46842 * 240.00613 * 13 11 9
17 17 N 1.30289 * 107.30396 * 180.22878 * 4 3 2
18 18 N 1.28525 * 110.05731 * 359.77103 * 17 4 3
19 19 C 1.31223 * 109.85809 * 0.02562 * 18 17 4
20 20 N 1.38574 * 126.47131 * 179.97438 * 19 18 17
21 21 C 1.46854 * 111.00326 * 61.46560 * 20 19 18
22 22 C 1.53034 * 109.52349 * 174.16135 * 21 20 19
23 23 C 1.53119 * 109.28183 * 59.18277 * 22 21 20
24 24 C 1.53119 * 109.20925 * 302.31242 * 23 22 21
25 25 C 1.52996 * 109.50444 * 177.62924 * 24 23 22
26 26 O 1.42904 * 109.50327 * 297.74708 * 24 23 22
27 27 C 1.42902 * 113.99969 * 299.99777 * 26 24 23
28 28 C 1.46847 * 111.00327 * 297.25799 * 20 19 18
29 29 H 1.09001 * 109.47176 * 63.43470 * 1 2 3
30 30 H 1.09005 * 109.47500 * 183.43485 * 1 2 3
31 31 H 1.08998 * 109.47479 * 303.43571 * 1 2 3
32 32 H 1.08997 * 109.46935 * 239.99312 * 2 1 3
33 33 H 1.09008 * 109.46793 * 120.00225 * 2 1 3
34 34 H 1.08995 * 109.47334 * 30.25210 * 5 4 3
35 35 H 1.08998 * 109.46952 * 150.25585 * 5 4 3
36 36 H 0.96700 * 113.99749 * 300.00027 * 8 6 5
37 37 H 0.97005 * 119.99563 * 179.97438 * 12 11 9
38 38 H 1.09003 * 109.45717 * 54.14327 * 21 20 19
39 39 H 1.09001 * 109.45153 * 294.17259 * 21 20 19
40 40 H 1.09001 * 109.50178 * 299.23667 * 22 21 20
41 41 H 1.09000 * 109.49929 * 179.12022 * 22 21 20
42 42 H 1.08998 * 109.52243 * 62.24325 * 23 22 21
43 43 H 1.08994 * 109.51945 * 182.37891 * 23 22 21
44 44 H 1.08996 * 109.47285 * 60.00016 * 25 24 23
45 45 H 1.09002 * 109.47342 * 179.97438 * 25 24 23
46 46 H 1.09002 * 109.46672 * 300.00002 * 25 24 23
47 47 H 1.09000 * 109.47309 * 179.97438 * 27 26 24
48 48 H 1.09002 * 109.47025 * 300.00585 * 27 26 24
49 49 H 1.09008 * 109.46792 * 60.00067 * 27 26 24
50 50 H 1.09001 * 109.46111 * 305.85680 * 28 20 19
51 51 H 1.08995 * 109.46438 * 65.82965 * 28 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3090 2.1540 -1.0900
5 6 2.1858 1.7431 -2.5346
6 6 3.5017 1.1168 -3.0006
7 1 3.7683 0.2949 -2.3362
8 8 4.5345 2.1042 -2.9750
9 6 3.3401 0.5951 -4.4052
10 1 2.3936 0.7002 -4.9147
11 6 4.4008 -0.0153 -5.0402
12 7 5.5536 -0.1428 -4.4199
13 14 4.2008 -0.6613 -6.7815
14 1 2.8175 -0.3957 -7.2520
15 1 5.1678 0.0224 -7.6772
16 1 4.4580 -2.1238 -6.7994
17 7 2.7160 3.3101 -0.6479
18 7 2.6979 3.3218 0.6372
19 6 2.2753 2.1640 1.0876
20 7 2.1234 1.8030 2.4169
21 6 1.1413 2.6646 3.0874
22 6 0.8921 2.1481 4.5062
23 6 2.2117 2.1466 5.2828
24 6 3.2327 1.2808 4.5395
25 6 4.5718 1.3221 5.2784
26 8 2.7615 -0.0670 4.4793
27 6 2.5526 -0.6673 5.7592
28 6 3.4134 1.8228 3.1183
29 1 -0.3633 0.4596 -0.9192
30 1 -0.3634 -1.0258 0.0616
31 1 -0.3634 0.5662 0.8576
32 1 1.8932 -0.5139 -0.8899
33 1 1.8933 -0.5139 0.8900
34 1 1.3806 1.0158 -2.6381
35 1 1.9647 2.6193 -3.1440
36 1 4.3639 2.8666 -3.5448
37 1 6.2997 -0.5726 -4.8665
38 1 0.2062 2.6535 2.5273
39 1 1.5246 3.6839 3.1341
40 1 0.4959 1.1337 4.4598
41 1 0.1748 2.7969 5.0089
42 1 2.5884 3.1662 5.3628
43 1 2.0467 1.7397 6.2804
44 1 4.4402 0.9399 6.2906
45 1 5.2981 0.7053 4.7491
46 1 4.9309 2.3503 5.3221
47 1 2.1950 -1.6886 5.6275
48 1 3.4916 -0.6792 6.3126
49 1 1.8112 -0.0919 6.3137
50 1 4.1287 1.2003 2.5808
51 1 3.7858 2.8461 3.1650
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001646712033.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:22:11
Heat of formation + Delta-G solvation = -35.734889 kcal
Electronic energy + Delta-G solvation = -31446.037164 eV
Core-core repulsion = 27381.129554 eV
Total energy + Delta-G solvation = -4064.907610 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-43.98901 -41.00838 -38.22152 -37.81268 -36.60619 -34.35526 -34.21674 -32.82048
-32.63637 -31.37215 -29.73729 -28.25505 -27.39530 -27.17530 -25.68786 -24.86297
-23.45907 -23.13287 -21.82927 -21.41595 -20.49800 -19.10454 -18.30782 -17.66349
-17.24299 -16.95152 -16.65472 -16.37943 -16.32321 -16.13013 -15.81102 -15.55132
-15.37328 -15.15136 -14.73654 -14.50319 -14.30862 -14.11278 -14.00958 -13.66610
-13.32415 -13.22139 -13.15927 -13.02638 -12.95469 -12.88199 -12.77204 -12.65125
-12.41333 -12.30604 -12.30319 -12.00930 -11.90816 -11.69042 -11.50828 -11.27290
-11.23474 -11.03867 -10.72048 -10.44583 -10.34249 -9.84309 -9.76830 -8.13046
-6.39870 0.73794 1.28222 1.42655 1.44794 1.56574 1.80777 2.40793
2.60277 2.84135 3.14116 3.46696 3.59300 3.68117 3.71378 3.85117
3.99610 4.01645 4.06479 4.09898 4.21944 4.28069 4.31713 4.40043
4.47879 4.54527 4.55055 4.57208 4.60392 4.68531 4.69763 4.71676
4.76286 4.79573 4.80261 4.86521 4.94722 4.99873 5.00817 5.13387
5.16728 5.18658 5.26538 5.34353 5.57626 5.60552 5.69637 5.70638
6.03237 6.25624 6.41091 6.72020 7.33916 7.53924 7.73570 8.91889
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.017652 B = 0.002875 C = 0.002820
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1585.833178 B = 9738.283853 C = 9928.338751
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.101 3.899
3 N -0.460 5.460
4 C 0.206 3.794
5 C -0.047 4.047
6 C 0.243 3.757
7 H 0.016 0.984
8 O -0.580 6.580
9 C -0.580 4.580
10 H 0.072 0.928
11 C 0.025 3.975
12 N -0.902 5.902
13 Si 0.963 3.037
14 H -0.257 1.257
15 H -0.284 1.284
16 H -0.280 1.280
17 N -0.321 5.321
18 N -0.348 5.348
19 C 0.334 3.666
20 N -0.444 5.444
21 C 0.067 3.933
22 C -0.101 4.101
23 C -0.144 4.144
24 C 0.125 3.875
25 C -0.176 4.176
26 O -0.386 6.386
27 C 0.019 3.981
28 C 0.083 3.917
29 H 0.057 0.943
30 H 0.104 0.896
31 H 0.060 0.940
32 H 0.090 0.910
33 H 0.104 0.896
34 H 0.100 0.900
35 H 0.096 0.904
36 H 0.357 0.643
37 H 0.260 0.740
38 H 0.071 0.929
39 H 0.041 0.959
40 H 0.075 0.925
41 H 0.097 0.903
42 H 0.079 0.921
43 H 0.095 0.905
44 H 0.085 0.915
45 H 0.054 0.946
46 H 0.075 0.925
47 H 0.088 0.912
48 H 0.050 0.950
49 H 0.057 0.943
50 H 0.055 0.945
51 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.920 -0.879 22.684 25.640
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.020 4.020
3 N -0.152 5.152
4 C -0.063 4.063
5 C -0.087 4.087
6 C 0.184 3.816
7 H 0.034 0.966
8 O -0.384 6.384
9 C -0.618 4.618
10 H 0.090 0.910
11 C -0.178 4.178
12 N -0.539 5.539
13 Si 0.788 3.212
14 H -0.180 1.180
15 H -0.210 1.210
16 H -0.206 1.206
17 N -0.161 5.161
18 N -0.192 5.192
19 C -0.023 4.023
20 N -0.170 5.170
21 C -0.060 4.060
22 C -0.139 4.139
23 C -0.181 4.181
24 C 0.085 3.915
25 C -0.234 4.234
26 O -0.305 6.305
27 C -0.077 4.077
28 C -0.045 4.045
29 H 0.076 0.924
30 H 0.122 0.878
31 H 0.079 0.921
32 H 0.109 0.891
33 H 0.122 0.878
34 H 0.118 0.882
35 H 0.114 0.886
36 H 0.203 0.797
37 H 0.069 0.931
38 H 0.089 0.911
39 H 0.059 0.941
40 H 0.094 0.906
41 H 0.115 0.885
42 H 0.098 0.902
43 H 0.113 0.887
44 H 0.104 0.896
45 H 0.073 0.927
46 H 0.094 0.906
47 H 0.106 0.894
48 H 0.068 0.932
49 H 0.076 0.924
50 H 0.073 0.927
51 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -11.210 -0.555 22.967 25.562
hybrid contribution 0.250 -0.450 -1.337 1.433
sum -10.960 -1.005 21.629 24.268
Atomic orbital electron populations
1.22016 0.91617 1.04717 1.02392 1.22081 0.97467 0.77376 1.05118
1.46571 1.48885 1.14486 1.05297 1.25181 1.00017 0.88415 0.92678
1.20924 1.01529 1.02416 0.83874 1.19118 0.82066 0.85967 0.94411
0.96625 1.86533 1.49106 1.33625 1.69096 1.22022 0.98752 1.40304
1.00693 0.90965 1.25941 0.94681 0.94991 1.02151 1.70259 1.02725
1.42068 1.38895 0.85454 0.78759 0.77747 0.79268 1.18044 1.21022
1.20600 1.73893 1.19646 1.19643 1.02936 1.74386 1.20954 1.19703
1.04152 1.22529 1.02690 0.87771 0.89264 1.58669 1.11204 1.53036
0.94124 1.22233 0.93827 0.93721 0.96184 1.21501 0.97804 1.02804
0.91799 1.22229 0.95193 1.00722 1.00005 1.21467 0.94243 0.83380
0.92408 1.22364 0.95997 1.03555 1.01466 1.88054 1.86757 1.26120
1.29581 1.22957 1.00639 0.98657 0.85459 1.22148 0.88498 0.99977
0.93872 0.92436 0.87763 0.92117 0.89144 0.87772 0.88219 0.88589
0.79748 0.93095 0.91054 0.94056 0.90644 0.88490 0.90196 0.88666
0.89583 0.92687 0.90559 0.89358 0.93182 0.92440 0.92664 0.92367
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.21 10.24 71.98 0.74 -2.48 16
2 C 0.10 2.88 6.62 86.38 0.57 3.45 16
3 N -0.46 -16.60 2.81 -514.86 -1.45 -18.05 16
4 C 0.21 8.56 7.09 137.64 0.98 9.53 16
5 C -0.05 -1.93 5.03 29.85 0.15 -1.78 16
6 C 0.24 12.38 2.81 29.85 0.08 12.47 16
7 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16
8 O -0.58 -31.93 12.48 -148.98 -1.86 -33.79 16
9 C -0.58 -30.64 8.76 25.60 0.22 -30.41 16
10 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16
11 C 0.02 1.35 5.40 84.65 0.46 1.81 16
12 N -0.90 -54.09 12.84 21.45 0.28 -53.82 16
13 Si 0.96 42.43 29.54 68.60 2.03 44.45 16
14 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16
15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
16 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16
17 N -0.32 -14.67 12.18 -49.54 -0.60 -15.28 16
18 N -0.35 -14.72 12.19 -58.01 -0.71 -15.43 16
19 C 0.33 12.06 6.41 260.11 1.67 13.73 16
20 N -0.44 -12.51 4.56 -705.89 -3.22 -15.73 16
21 C 0.07 1.52 5.38 86.32 0.46 1.98 16
22 C -0.10 -1.53 5.94 30.65 0.18 -1.34 16
23 C -0.14 -1.98 4.48 30.67 0.14 -1.84 16
24 C 0.12 2.36 0.73 -10.70 -0.01 2.35 16
25 C -0.18 -2.73 8.27 71.98 0.59 -2.13 16
26 O -0.39 -8.03 9.68 -148.98 -1.44 -9.48 16
27 C 0.02 0.24 10.22 113.37 1.16 1.40 16
28 C 0.08 2.22 4.36 86.37 0.38 2.59 16
29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
30 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16
31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
32 H 0.09 2.74 7.84 -2.39 -0.02 2.72 16
33 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16
34 H 0.10 3.55 7.91 -2.39 -0.02 3.53 16
35 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16
36 H 0.36 17.73 9.04 -74.06 -0.67 17.06 16
37 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16
38 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16
39 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16
40 H 0.07 1.22 7.80 -2.39 -0.02 1.20 16
41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16
43 H 0.09 0.90 6.43 -2.39 -0.02 0.88 16
44 H 0.09 0.96 6.56 -2.39 -0.02 0.94 16
45 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
47 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16
48 H 0.05 0.55 6.43 -2.39 -0.02 0.53 16
49 H 0.06 0.55 6.37 -2.38 -0.02 0.54 16
50 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16
51 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
Total: -1.00 -74.29 405.81 1.05 -73.23
By element:
Atomic # 1 Polarization: 34.30 SS G_CDS: 0.25 Total: 34.54 kcal
Atomic # 6 Polarization: 1.56 SS G_CDS: 7.77 Total: 9.33 kcal
Atomic # 7 Polarization: -112.60 SS G_CDS: -5.70 Total: -118.30 kcal
Atomic # 8 Polarization: -39.96 SS G_CDS: -3.30 Total: -43.27 kcal
Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal
Total: -74.29 1.05 -73.23 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001646712033.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.499 kcal
(2) G-P(sol) polarization free energy of solvation -74.285 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.786 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.234 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.735 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds