Wall clock time and date at job start Tue Mar 31 2020 21:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47231 * 2 1 4 4 C 1.36734 * 127.13587 * 84.73534 * 3 2 1 5 5 C 1.50700 * 126.34820 * 359.97438 * 4 3 2 6 6 H 1.09006 * 109.47119 * 0.02562 * 5 4 3 7 7 C 1.52994 * 109.47273 * 240.00144 * 5 4 3 8 8 C 1.53006 * 109.46926 * 119.99921 * 5 4 3 9 9 C 1.50699 * 109.46871 * 184.99900 * 8 5 4 10 10 H 1.07994 * 120.00084 * 0.02562 * 9 8 5 11 11 C 1.37881 * 119.99574 * 179.97438 * 9 8 5 12 12 N 1.31516 * 120.00271 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99825 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47333 * 270.00274 * 13 11 9 15 15 H 1.48504 * 109.47148 * 30.00376 * 13 11 9 16 16 H 1.48500 * 109.47138 * 150.00256 * 13 11 9 17 17 N 1.30294 * 107.30300 * 180.24068 * 4 3 2 18 18 N 1.28530 * 110.05513 * 359.56219 * 17 4 3 19 19 C 1.31215 * 109.85982 * 0.44895 * 18 17 4 20 20 N 1.38574 * 126.47597 * 179.69271 * 19 18 17 21 21 C 1.47022 * 110.99541 * 36.50500 * 20 19 18 22 22 C 1.53101 * 109.25694 * 177.60723 * 21 20 19 23 23 O 1.43018 * 109.25836 * 56.84664 * 22 21 20 24 24 C 1.43012 * 113.73970 * 301.33021 * 23 22 21 25 25 H 1.09000 * 109.51161 * 298.73539 * 24 23 22 26 26 C 1.53002 * 109.51079 * 178.64667 * 24 23 22 27 27 O 1.42909 * 109.46571 * 64.99820 * 26 24 23 28 28 C 1.42897 * 113.99662 * 180.02562 * 27 26 24 29 29 C 1.47009 * 111.00369 * 272.87173 * 20 19 18 30 30 H 1.08999 * 109.46906 * 305.04501 * 1 2 3 31 31 H 1.09000 * 109.47468 * 65.04360 * 1 2 3 32 32 H 1.09003 * 109.47410 * 185.04495 * 1 2 3 33 33 H 1.09004 * 109.46904 * 239.99976 * 2 1 3 34 34 H 1.08994 * 109.47443 * 120.00617 * 2 1 3 35 35 H 1.08998 * 109.47496 * 59.99814 * 7 5 4 36 36 H 1.08998 * 109.46963 * 180.02562 * 7 5 4 37 37 H 1.09006 * 109.47241 * 300.00162 * 7 5 4 38 38 H 1.08999 * 109.46876 * 64.99861 * 8 5 4 39 39 H 1.08997 * 109.47007 * 305.00467 * 8 5 4 40 40 H 0.96995 * 119.99726 * 359.97438 * 12 11 9 41 41 H 1.09000 * 109.50533 * 297.53945 * 21 20 19 42 42 H 1.08997 * 109.50629 * 57.67703 * 21 20 19 43 43 H 1.08994 * 109.50571 * 176.78267 * 22 21 20 44 44 H 1.09002 * 109.50293 * 296.87021 * 22 21 20 45 45 H 1.08994 * 109.47559 * 184.99781 * 26 24 23 46 46 H 1.08997 * 109.46618 * 305.00524 * 26 24 23 47 47 H 1.09003 * 109.47026 * 300.00331 * 28 27 26 48 48 H 1.09000 * 109.47225 * 60.00220 * 28 27 26 49 49 H 1.09002 * 109.46894 * 180.02562 * 28 27 26 50 50 H 1.09003 * 109.50443 * 302.32280 * 29 20 19 51 51 H 1.09001 * 109.50758 * 62.45472 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1992 2.1928 1.0855 5 6 1.9309 1.8333 2.5241 6 1 1.5632 0.8086 2.5801 7 6 0.8805 2.7848 3.1002 8 6 3.2258 1.9547 3.3301 9 6 2.9866 1.4782 4.7397 10 1 2.0090 1.1239 5.0313 11 6 4.0161 1.4938 5.6567 12 7 5.2068 1.9248 5.3013 13 14 3.7199 0.9025 7.4037 14 1 3.2840 2.0453 8.2458 15 1 2.6636 -0.1413 7.4006 16 1 4.9765 0.3335 7.9535 17 7 2.6411 3.3366 0.6448 18 7 2.7596 3.3000 -0.6345 19 6 2.3875 2.1245 -1.0832 20 7 2.3716 1.7153 -2.4071 21 6 3.5119 2.2771 -3.1458 22 6 3.4891 1.7533 -4.5842 23 8 2.2360 2.0862 -5.1877 24 6 1.1038 1.5546 -4.4944 25 1 1.1597 0.4661 -4.4868 26 6 -0.1805 1.9952 -5.1997 27 8 -0.2302 1.4151 -6.5048 28 6 -1.3963 1.7657 -7.2526 29 6 1.1024 2.0764 -3.0550 30 1 -0.3633 0.5901 0.8413 31 1 -0.3634 0.4336 -0.9317 32 1 -0.3634 -1.0237 0.0904 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 -0.0420 2.6983 2.5260 36 1 0.6868 2.5250 4.1409 37 1 1.2485 3.8093 3.0443 38 1 3.5462 2.9963 3.3481 39 1 4.0008 1.3441 2.8668 40 1 5.3607 2.2314 4.3941 41 1 3.4404 3.3647 -3.1534 42 1 4.4419 1.9760 -2.6636 43 1 4.2993 2.2115 -5.1513 44 1 3.6152 0.6706 -4.5793 45 1 -1.0439 1.6651 -4.6222 46 1 -0.1939 3.0818 -5.2844 47 1 -2.2852 1.4311 -6.7177 48 1 -1.4346 2.8476 -7.3799 49 1 -1.3588 1.2855 -8.2304 50 1 0.2735 1.6289 -2.5064 51 1 0.9924 3.1608 -3.0611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646717984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:12 Heat of formation + Delta-G solvation = -13.775390 kcal Electronic energy + Delta-G solvation = -30662.190495 eV Core-core repulsion = 26598.235120 eV Total energy + Delta-G solvation = -4063.955375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.79363 -40.07716 -38.03143 -36.22820 -35.80273 -34.97382 -32.63545 -32.34177 -30.58086 -29.47220 -28.30499 -26.86559 -26.62522 -25.32964 -24.24796 -23.87909 -23.36627 -22.12193 -21.21512 -20.40217 -19.29383 -17.51439 -17.20693 -16.92364 -16.83637 -16.46472 -15.91424 -15.78419 -15.38371 -15.24727 -15.03723 -14.67464 -14.36094 -14.12992 -13.97928 -13.73788 -13.51221 -13.12855 -12.84720 -12.59254 -12.47257 -12.28298 -12.00219 -11.94325 -11.85422 -11.57353 -11.47447 -11.32965 -11.18245 -11.01907 -10.95988 -10.79361 -10.49610 -10.17851 -10.15834 -10.09799 -10.04631 -9.97722 -9.83880 -9.16487 -8.65255 -8.37506 -8.33040 -6.36911 -4.07500 1.91567 2.28498 3.07649 3.23869 3.32261 3.42318 3.45411 3.60653 3.62173 4.42747 4.50896 4.51692 4.56530 4.60794 4.68920 4.76946 4.79239 4.86797 4.92281 4.93658 4.99154 5.04593 5.08147 5.12252 5.16624 5.27891 5.31177 5.35100 5.40263 5.42306 5.48762 5.50117 5.59172 5.78058 5.84712 5.90897 5.95298 6.09499 6.19852 6.36817 6.57014 6.66305 6.68830 6.73426 6.83262 6.92482 7.28499 7.30801 7.49831 8.13140 8.43189 8.84870 9.05212 9.65095 11.03389 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023524 B = 0.002404 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.984755 B =11643.189063 C =12165.048238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.104 3.896 3 N -0.468 5.468 4 C 0.218 3.782 5 C 0.005 3.995 6 H 0.074 0.926 7 C -0.125 4.125 8 C 0.025 3.975 9 C -0.601 4.601 10 H 0.053 0.947 11 C 0.016 3.984 12 N -0.910 5.910 13 Si 1.071 2.929 14 H -0.287 1.287 15 H -0.289 1.289 16 H -0.285 1.285 17 N -0.287 5.287 18 N -0.311 5.311 19 C 0.319 3.681 20 N -0.454 5.454 21 C 0.031 3.969 22 C 0.066 3.934 23 O -0.369 6.369 24 C 0.100 3.900 25 H 0.078 0.922 26 C 0.070 3.930 27 O -0.382 6.382 28 C 0.031 3.969 29 C 0.033 3.967 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.023 0.977 39 H 0.004 0.996 40 H 0.271 0.729 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.042 0.958 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 -4.607 -22.357 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.161 5.161 4 C -0.049 4.049 5 C -0.016 4.016 6 H 0.093 0.907 7 C -0.183 4.183 8 C -0.013 4.013 9 C -0.639 4.639 10 H 0.071 0.929 11 C -0.189 4.189 12 N -0.546 5.546 13 Si 0.900 3.100 14 H -0.214 1.214 15 H -0.215 1.215 16 H -0.211 1.211 17 N -0.126 5.126 18 N -0.155 5.155 19 C -0.037 4.037 20 N -0.179 5.179 21 C -0.097 4.097 22 C -0.011 4.011 23 O -0.288 6.288 24 C 0.041 3.959 25 H 0.096 0.904 26 C -0.007 4.007 27 O -0.300 6.300 28 C -0.066 4.066 29 C -0.095 4.095 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.022 0.978 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.106 0.894 50 H 0.106 0.894 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.692 -3.948 -21.166 24.501 hybrid contribution -1.405 -0.363 -1.214 1.892 sum -13.098 -4.311 -22.380 26.287 Atomic orbital electron populations 1.22165 0.94103 1.03406 1.02801 1.21844 0.95502 0.79274 1.05242 1.46417 1.49882 1.13668 1.06154 1.25668 0.99627 0.87427 0.92193 1.19848 1.00487 0.99100 0.82141 0.90749 1.21664 0.95626 0.99693 1.01290 1.19230 0.89874 0.97581 0.94594 1.21957 0.98933 1.47416 0.95612 0.92918 1.25829 0.92930 0.95184 1.04923 1.70725 1.22593 1.39423 1.21820 0.83514 0.75470 0.76314 0.74747 1.21392 1.21509 1.21065 1.74056 1.17859 1.18769 1.01878 1.74537 1.20837 1.15400 1.04743 1.22097 1.05222 0.88793 0.87622 1.58702 1.04319 1.58402 0.96497 1.22826 0.92868 0.99809 0.94151 1.22739 0.86449 1.00424 0.91493 1.88066 1.13593 1.75726 1.51413 1.22048 0.86260 0.98784 0.88792 0.90379 1.22446 0.95513 0.98229 0.84511 1.87931 1.42788 1.72191 1.27121 1.22766 0.87445 0.99957 0.96384 1.22793 0.91190 1.00824 0.94653 0.91485 0.92401 0.90181 0.88279 0.88337 0.94910 0.90472 0.92127 0.95889 0.97785 0.91882 0.91365 0.88919 0.87479 0.91986 0.91579 0.92121 0.94067 0.93915 0.89440 0.89432 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.10 1.24 6.51 -4.04 -0.03 1.21 16 3 N -0.47 -7.53 2.81 -114.09 -0.32 -7.85 16 4 C 0.22 4.27 6.58 -154.02 -1.01 3.25 16 5 C 0.01 0.11 2.71 -91.77 -0.25 -0.14 16 6 H 0.07 1.39 7.08 -51.93 -0.37 1.02 16 7 C -0.12 -2.34 8.99 37.15 0.33 -2.01 16 8 C 0.03 0.64 3.74 -27.88 -0.10 0.54 16 9 C -0.60 -16.35 8.41 -34.44 -0.29 -16.64 16 10 H 0.05 1.37 7.06 -52.49 -0.37 1.00 16 11 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 12 N -0.91 -27.91 13.65 55.43 0.76 -27.15 16 13 Si 1.07 24.82 29.90 -169.99 -5.08 19.73 16 14 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 N -0.29 -6.23 12.18 32.99 0.40 -5.82 16 18 N -0.31 -6.13 11.64 30.31 0.35 -5.78 16 19 C 0.32 5.20 6.75 -318.88 -2.15 3.04 16 20 N -0.45 -5.76 4.71 -174.20 -0.82 -6.58 16 21 C 0.03 0.36 5.33 -3.71 -0.02 0.34 16 22 C 0.07 0.63 7.01 37.21 0.26 0.89 16 23 O -0.37 -4.14 10.44 -39.95 -0.42 -4.56 16 24 C 0.10 0.96 3.09 -26.68 -0.08 0.88 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 C 0.07 0.59 5.61 37.16 0.21 0.80 16 27 O -0.38 -3.70 10.67 -39.95 -0.43 -4.13 16 28 C 0.03 0.19 11.01 101.05 1.11 1.31 16 29 C 0.03 0.36 4.87 -3.71 -0.02 0.34 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 1.02 8.11 -51.93 -0.42 0.60 16 34 H 0.10 1.19 7.47 -51.93 -0.39 0.80 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 39 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 40 H 0.27 8.41 7.22 -40.82 -0.29 8.12 16 41 H 0.07 0.90 7.96 -51.93 -0.41 0.48 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.84 6.92 -51.93 -0.36 0.48 16 51 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 409.28 15.07 6.17 6.17 Total: -1.00 -34.57 409.28 -10.02 -44.60 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -8.88 Total: -1.58 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.76 Total: -7.05 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.37 Total: -53.19 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.84 Total: -8.68 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.57 -10.02 -44.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646717984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.820 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds