Wall clock time and date at job start Tue Mar 31 2020 21:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47231 * 2 1 4 4 C 1.36734 * 127.13587 * 84.73534 * 3 2 1 5 5 C 1.50700 * 126.34820 * 359.97438 * 4 3 2 6 6 H 1.09006 * 109.47119 * 0.02562 * 5 4 3 7 7 C 1.52994 * 109.47273 * 240.00144 * 5 4 3 8 8 C 1.53006 * 109.46926 * 119.99921 * 5 4 3 9 9 C 1.50699 * 109.46871 * 184.99900 * 8 5 4 10 10 H 1.07994 * 120.00084 * 0.02562 * 9 8 5 11 11 C 1.37881 * 119.99574 * 179.97438 * 9 8 5 12 12 N 1.31516 * 120.00271 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99825 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47333 * 270.00274 * 13 11 9 15 15 H 1.48504 * 109.47148 * 30.00376 * 13 11 9 16 16 H 1.48500 * 109.47138 * 150.00256 * 13 11 9 17 17 N 1.30294 * 107.30300 * 180.24068 * 4 3 2 18 18 N 1.28530 * 110.05513 * 359.56219 * 17 4 3 19 19 C 1.31215 * 109.85982 * 0.44895 * 18 17 4 20 20 N 1.38574 * 126.47597 * 179.69271 * 19 18 17 21 21 C 1.47022 * 110.99541 * 36.50500 * 20 19 18 22 22 C 1.53101 * 109.25694 * 177.60723 * 21 20 19 23 23 O 1.43018 * 109.25836 * 56.84664 * 22 21 20 24 24 C 1.43012 * 113.73970 * 301.33021 * 23 22 21 25 25 H 1.09000 * 109.51161 * 298.73539 * 24 23 22 26 26 C 1.53002 * 109.51079 * 178.64667 * 24 23 22 27 27 O 1.42909 * 109.46571 * 64.99820 * 26 24 23 28 28 C 1.42897 * 113.99662 * 180.02562 * 27 26 24 29 29 C 1.47009 * 111.00369 * 272.87173 * 20 19 18 30 30 H 1.08999 * 109.46906 * 305.04501 * 1 2 3 31 31 H 1.09000 * 109.47468 * 65.04360 * 1 2 3 32 32 H 1.09003 * 109.47410 * 185.04495 * 1 2 3 33 33 H 1.09004 * 109.46904 * 239.99976 * 2 1 3 34 34 H 1.08994 * 109.47443 * 120.00617 * 2 1 3 35 35 H 1.08998 * 109.47496 * 59.99814 * 7 5 4 36 36 H 1.08998 * 109.46963 * 180.02562 * 7 5 4 37 37 H 1.09006 * 109.47241 * 300.00162 * 7 5 4 38 38 H 1.08999 * 109.46876 * 64.99861 * 8 5 4 39 39 H 1.08997 * 109.47007 * 305.00467 * 8 5 4 40 40 H 0.96995 * 119.99726 * 359.97438 * 12 11 9 41 41 H 1.09000 * 109.50533 * 297.53945 * 21 20 19 42 42 H 1.08997 * 109.50629 * 57.67703 * 21 20 19 43 43 H 1.08994 * 109.50571 * 176.78267 * 22 21 20 44 44 H 1.09002 * 109.50293 * 296.87021 * 22 21 20 45 45 H 1.08994 * 109.47559 * 184.99781 * 26 24 23 46 46 H 1.08997 * 109.46618 * 305.00524 * 26 24 23 47 47 H 1.09003 * 109.47026 * 300.00331 * 28 27 26 48 48 H 1.09000 * 109.47225 * 60.00220 * 28 27 26 49 49 H 1.09002 * 109.46894 * 180.02562 * 28 27 26 50 50 H 1.09003 * 109.50443 * 302.32280 * 29 20 19 51 51 H 1.09001 * 109.50758 * 62.45472 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1992 2.1928 1.0855 5 6 1.9309 1.8333 2.5241 6 1 1.5632 0.8086 2.5801 7 6 0.8805 2.7848 3.1002 8 6 3.2258 1.9547 3.3301 9 6 2.9866 1.4782 4.7397 10 1 2.0090 1.1239 5.0313 11 6 4.0161 1.4938 5.6567 12 7 5.2068 1.9248 5.3013 13 14 3.7199 0.9025 7.4037 14 1 3.2840 2.0453 8.2458 15 1 2.6636 -0.1413 7.4006 16 1 4.9765 0.3335 7.9535 17 7 2.6411 3.3366 0.6448 18 7 2.7596 3.3000 -0.6345 19 6 2.3875 2.1245 -1.0832 20 7 2.3716 1.7153 -2.4071 21 6 3.5119 2.2771 -3.1458 22 6 3.4891 1.7533 -4.5842 23 8 2.2360 2.0862 -5.1877 24 6 1.1038 1.5546 -4.4944 25 1 1.1597 0.4661 -4.4868 26 6 -0.1805 1.9952 -5.1997 27 8 -0.2302 1.4151 -6.5048 28 6 -1.3963 1.7657 -7.2526 29 6 1.1024 2.0764 -3.0550 30 1 -0.3633 0.5901 0.8413 31 1 -0.3634 0.4336 -0.9317 32 1 -0.3634 -1.0237 0.0904 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 -0.0420 2.6983 2.5260 36 1 0.6868 2.5250 4.1409 37 1 1.2485 3.8093 3.0443 38 1 3.5462 2.9963 3.3481 39 1 4.0008 1.3441 2.8668 40 1 5.3607 2.2314 4.3941 41 1 3.4404 3.3647 -3.1534 42 1 4.4419 1.9760 -2.6636 43 1 4.2993 2.2115 -5.1513 44 1 3.6152 0.6706 -4.5793 45 1 -1.0439 1.6651 -4.6222 46 1 -0.1939 3.0818 -5.2844 47 1 -2.2852 1.4311 -6.7177 48 1 -1.4346 2.8476 -7.3799 49 1 -1.3588 1.2855 -8.2304 50 1 0.2735 1.6289 -2.5064 51 1 0.9924 3.1608 -3.0611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646717984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:11 Heat of formation + Delta-G solvation = -35.360294 kcal Electronic energy + Delta-G solvation = -30663.126486 eV Core-core repulsion = 26598.235120 eV Total energy + Delta-G solvation = -4064.891366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.18379 -40.96077 -38.69828 -37.56955 -37.04038 -36.38925 -34.33959 -33.40639 -31.62226 -30.75309 -29.22405 -28.58331 -27.60368 -26.19506 -25.75759 -25.11540 -24.44927 -23.62086 -22.27245 -21.50218 -20.76457 -18.86868 -18.60745 -18.06506 -17.70829 -17.54159 -17.01251 -16.57318 -16.36285 -16.16516 -16.06300 -15.89118 -15.60437 -15.31904 -15.25765 -15.07817 -14.73072 -14.23310 -14.18280 -13.82696 -13.53133 -13.34693 -13.15997 -13.15138 -12.87026 -12.76886 -12.64409 -12.57652 -12.44791 -12.36289 -12.11814 -12.04819 -11.91745 -11.83789 -11.75133 -11.56109 -11.23104 -10.92113 -10.73562 -10.67518 -10.53819 -10.40830 -9.76819 -8.65603 -6.36861 0.58480 1.06108 1.55997 1.65135 1.65605 1.81574 2.30492 2.58496 2.60103 2.80912 3.19732 3.29246 3.54179 3.64618 3.65983 3.80158 3.85224 3.91163 3.97930 4.02012 4.17353 4.21309 4.25502 4.26870 4.28019 4.36875 4.39736 4.42982 4.50842 4.51864 4.55058 4.56981 4.70223 4.77160 4.80830 4.87012 4.88237 4.92710 4.97664 5.05480 5.15601 5.17207 5.23859 5.31821 5.39719 5.50343 5.95605 6.02019 6.05059 6.18352 6.20170 6.55065 7.46697 7.60797 8.73936 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023524 B = 0.002404 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.984755 B =11643.189063 C =12165.048238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.093 3.907 3 N -0.461 5.461 4 C 0.205 3.795 5 C 0.017 3.983 6 H 0.096 0.904 7 C -0.117 4.117 8 C 0.034 3.966 9 C -0.601 4.601 10 H 0.070 0.930 11 C -0.044 4.044 12 N -0.941 5.941 13 Si 1.122 2.878 14 H -0.275 1.275 15 H -0.258 1.258 16 H -0.289 1.289 17 N -0.328 5.328 18 N -0.349 5.349 19 C 0.339 3.661 20 N -0.445 5.445 21 C 0.030 3.970 22 C 0.074 3.926 23 O -0.386 6.386 24 C 0.104 3.896 25 H 0.086 0.914 26 C 0.070 3.930 27 O -0.407 6.407 28 C 0.025 3.975 29 C 0.037 3.963 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.038 0.962 38 H -0.015 1.015 39 H -0.026 1.026 40 H 0.250 0.750 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.126 0.874 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.046 0.954 49 H 0.096 0.904 50 H 0.104 0.896 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.837 -6.897 -23.219 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.027 4.027 3 N -0.154 5.154 4 C -0.064 4.064 5 C -0.004 4.004 6 H 0.114 0.886 7 C -0.175 4.175 8 C -0.004 4.004 9 C -0.639 4.639 10 H 0.088 0.912 11 C -0.241 4.241 12 N -0.579 5.579 13 Si 0.943 3.057 14 H -0.201 1.201 15 H -0.183 1.183 16 H -0.215 1.215 17 N -0.167 5.167 18 N -0.193 5.193 19 C -0.018 4.018 20 N -0.171 5.171 21 C -0.097 4.097 22 C -0.003 4.003 23 O -0.305 6.305 24 C 0.045 3.955 25 H 0.104 0.896 26 C -0.007 4.007 27 O -0.326 6.326 28 C -0.071 4.071 29 C -0.090 4.090 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.003 0.997 39 H -0.008 1.008 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.144 0.856 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.115 0.885 50 H 0.122 0.878 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.470 -6.252 -22.062 27.114 hybrid contribution -0.555 0.331 -1.103 1.278 sum -15.024 -5.921 -23.164 28.238 Atomic orbital electron populations 1.22152 0.91729 1.05153 1.02696 1.22276 0.97458 0.76889 1.06118 1.46601 1.49119 1.14733 1.04936 1.25327 1.00620 0.87819 0.92620 1.19605 0.97978 1.00720 0.82115 0.88633 1.21578 0.96395 0.97961 1.01560 1.19028 0.91842 0.94404 0.95116 1.22359 0.99418 1.45961 0.96118 0.91205 1.27514 0.92406 0.94699 1.09452 1.70884 1.24279 1.42014 1.20732 0.82890 0.76046 0.76980 0.69807 1.20060 1.18254 1.21532 1.73950 1.19069 1.20600 1.03126 1.74447 1.23071 1.17653 1.04128 1.22462 1.02473 0.87858 0.89016 1.58972 1.05650 1.57678 0.94844 1.22882 0.92333 0.98830 0.95665 1.22805 0.86596 1.01208 0.89693 1.88061 1.14375 1.76154 1.51888 1.22111 0.86509 0.99035 0.87805 0.89597 1.22490 0.95548 0.98055 0.84563 1.87880 1.44433 1.72603 1.27715 1.22943 0.86967 1.00431 0.96715 1.22852 0.90401 1.00163 0.95597 0.92806 0.91516 0.87202 0.86326 0.88586 0.91619 0.90703 0.94235 0.99687 1.00782 0.94024 0.93205 0.89615 0.85605 0.90691 0.89195 0.92470 0.92582 0.93552 0.88510 0.87796 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.24 71.98 0.74 -1.74 16 2 C 0.09 2.00 6.51 86.38 0.56 2.56 16 3 N -0.46 -14.52 2.81 -514.86 -1.45 -15.97 16 4 C 0.21 8.15 6.58 137.64 0.91 9.05 16 5 C 0.02 0.68 2.71 -11.54 -0.03 0.65 16 6 H 0.10 3.44 7.08 -2.38 -0.02 3.42 16 7 C -0.12 -4.33 8.99 71.98 0.65 -3.68 16 8 C 0.03 1.81 3.74 29.85 0.11 1.92 16 9 C -0.60 -32.89 8.41 25.60 0.22 -32.68 16 10 H 0.07 3.53 7.06 -2.91 -0.02 3.51 16 11 C -0.04 -2.53 5.46 84.66 0.46 -2.07 16 12 N -0.94 -59.79 13.65 21.45 0.29 -59.49 16 13 Si 1.12 49.24 29.90 68.60 2.05 51.29 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 16 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 17 N -0.33 -14.86 12.18 -49.54 -0.60 -15.47 16 18 N -0.35 -14.23 11.64 -58.01 -0.68 -14.90 16 19 C 0.34 10.99 6.75 260.11 1.76 12.74 16 20 N -0.45 -10.81 4.71 -705.04 -3.32 -14.14 16 21 C 0.03 0.71 5.33 86.31 0.46 1.17 16 22 C 0.07 1.28 7.01 72.02 0.50 1.79 16 23 O -0.39 -8.02 10.44 -144.47 -1.51 -9.53 16 24 C 0.10 1.77 3.09 30.63 0.09 1.87 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 C 0.07 1.02 5.61 71.98 0.40 1.42 16 27 O -0.41 -7.04 10.67 -144.47 -1.54 -8.58 16 28 C 0.03 0.26 11.01 113.37 1.25 1.51 16 29 C 0.04 0.73 4.87 86.32 0.42 1.15 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.93 6.92 -2.39 -0.02 0.91 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.12 2.09 8.11 -2.38 -0.02 2.07 16 34 H 0.10 2.13 7.47 -2.39 -0.02 2.11 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.77 6.95 -2.39 -0.02 2.76 16 37 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 38 H -0.02 -0.92 8.01 -2.39 -0.02 -0.94 16 39 H -0.03 -1.52 8.01 -2.39 -0.02 -1.54 16 40 H 0.25 16.52 7.22 -92.71 -0.67 15.85 16 41 H 0.05 1.35 7.96 -2.39 -0.02 1.33 16 42 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.10 1.70 6.92 -2.39 -0.02 1.68 16 51 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -78.78 409.28 2.74 -76.04 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.00 Total: 15.08 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 8.50 Total: -4.33 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -5.76 Total: -119.97 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -3.05 Total: -18.11 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.05 Total: 51.29 kcal Total: -78.78 2.74 -76.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646717984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.675 kcal (2) G-P(sol) polarization free energy of solvation -78.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds