Wall clock time and date at job start Tue Mar 31 2020 21:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47375 * 2 1 4 4 C 1.36737 * 127.14091 * 88.64475 * 3 2 1 5 5 C 1.50697 * 126.34538 * 359.97438 * 4 3 2 6 6 H 1.09000 * 109.47419 * 359.71771 * 5 4 3 7 7 C 1.53004 * 109.47084 * 119.71781 * 5 4 3 8 8 C 1.53002 * 109.47291 * 239.71211 * 5 4 3 9 9 C 1.50699 * 109.47070 * 174.99937 * 8 5 4 10 10 H 1.07992 * 120.00186 * 0.02562 * 9 8 5 11 11 C 1.37874 * 119.99885 * 180.02562 * 9 8 5 12 12 N 1.31518 * 119.99968 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00192 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46867 * 90.00008 * 13 11 9 15 15 H 1.48496 * 109.47181 * 209.99763 * 13 11 9 16 16 H 1.48498 * 109.46895 * 330.00064 * 13 11 9 17 17 N 1.30299 * 107.30475 * 179.73851 * 4 3 2 18 18 N 1.28523 * 110.05675 * 0.25995 * 17 4 3 19 19 C 1.31217 * 109.85731 * 0.02562 * 18 17 4 20 20 N 1.38590 * 126.47204 * 180.02562 * 19 18 17 21 21 C 1.47011 * 110.99937 * 299.69730 * 20 19 18 22 22 C 1.53099 * 109.25934 * 182.39302 * 21 20 19 23 23 O 1.43014 * 109.25619 * 303.14887 * 22 21 20 24 24 C 1.43016 * 113.73799 * 58.66876 * 23 22 21 25 25 H 1.09000 * 109.50394 * 61.30601 * 24 23 22 26 26 C 1.52993 * 109.50464 * 181.39382 * 24 23 22 27 27 O 1.42908 * 109.47157 * 294.99839 * 26 24 23 28 28 C 1.42900 * 113.99952 * 180.02562 * 27 26 24 29 29 C 1.47010 * 111.00015 * 63.32771 * 20 19 18 30 30 H 1.08999 * 109.47311 * 182.83636 * 1 2 3 31 31 H 1.09005 * 109.47071 * 302.83692 * 1 2 3 32 32 H 1.09004 * 109.47250 * 62.83292 * 1 2 3 33 33 H 1.08997 * 109.47325 * 239.99625 * 2 1 3 34 34 H 1.09003 * 109.47206 * 119.99335 * 2 1 3 35 35 H 1.08999 * 109.47522 * 59.99680 * 7 5 4 36 36 H 1.08994 * 109.47003 * 180.02562 * 7 5 4 37 37 H 1.09008 * 109.46849 * 300.00021 * 7 5 4 38 38 H 1.08997 * 109.47405 * 295.00219 * 8 5 4 39 39 H 1.09008 * 109.46763 * 55.00253 * 8 5 4 40 40 H 0.97000 * 120.00078 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.50743 * 302.32706 * 21 20 19 42 42 H 1.08998 * 109.51153 * 62.45173 * 21 20 19 43 43 H 1.08996 * 109.50484 * 63.08644 * 22 21 20 44 44 H 1.09004 * 109.50798 * 183.16890 * 22 21 20 45 45 H 1.08995 * 109.47710 * 55.00410 * 26 24 23 46 46 H 1.09002 * 109.47269 * 175.00240 * 26 24 23 47 47 H 1.08996 * 109.47263 * 59.99993 * 28 27 26 48 48 H 1.08991 * 109.47325 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.47114 * 300.00375 * 28 27 26 50 50 H 1.08994 * 109.50654 * 297.54589 * 29 20 19 51 51 H 1.09002 * 109.50283 * 57.67459 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2693 2.1681 1.0897 5 6 2.0937 1.7759 2.5341 6 1 1.7244 0.7519 2.5902 7 6 3.4392 1.8731 3.2561 8 6 1.0886 2.7178 3.1999 9 6 0.8201 2.2521 4.6078 10 1 1.3170 1.3726 4.9896 11 6 -0.0599 2.9489 5.4083 12 7 -0.6647 4.0203 4.9435 13 14 -0.3922 2.3721 7.1537 14 1 0.5730 3.0165 8.0801 15 1 -1.7760 2.7445 7.5431 16 1 -0.2378 0.8969 7.2253 17 7 2.6931 3.3183 0.6478 18 7 2.7216 3.3135 -0.6371 19 6 2.3136 2.1506 -1.0876 20 7 2.2094 1.7726 -2.4169 21 6 1.2734 2.6450 -3.1408 22 6 1.1430 2.1568 -4.5860 23 8 2.4375 2.1294 -5.1933 24 6 3.3743 1.2888 -4.5142 25 1 3.0123 0.2607 -4.5210 26 6 4.7292 1.3581 -5.2215 27 8 4.6098 0.8068 -6.5345 28 6 5.8261 0.8229 -7.2844 29 6 3.5273 1.7682 -3.0683 30 1 -0.3634 -1.0264 0.0509 31 1 -0.3633 0.5573 0.8635 32 1 -0.3634 0.4692 -0.9143 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.8086 2.8970 3.2000 36 1 3.3123 1.5889 4.3007 37 1 4.1554 1.2020 2.7817 38 1 1.4974 3.7279 3.2231 39 1 0.1577 2.7155 2.6327 40 1 -1.2835 4.5108 5.5068 41 1 0.2974 2.6133 -2.6565 42 1 1.6502 3.6677 -3.1348 43 1 0.7157 1.1541 -4.5943 44 1 0.4938 2.8335 -5.1417 45 1 5.0498 2.3975 -5.2915 46 1 5.4650 0.7885 -4.6538 47 1 6.5844 0.2420 -6.7594 48 1 5.6520 0.3884 -8.2686 49 1 6.1699 1.8511 -7.3972 50 1 3.9402 2.7769 -3.0610 51 1 4.1966 1.0964 -2.5309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646717988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:16 Heat of formation + Delta-G solvation = -10.120796 kcal Electronic energy + Delta-G solvation = -30548.601257 eV Core-core repulsion = 26484.804358 eV Total energy + Delta-G solvation = -4063.796900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.70211 -40.00986 -37.97360 -36.13049 -35.64841 -34.80754 -32.56724 -32.23364 -30.41172 -29.49016 -28.19236 -27.05166 -26.71572 -25.30281 -24.27690 -23.74789 -23.29350 -22.12122 -21.07744 -20.32635 -19.08238 -17.40593 -17.13533 -16.84810 -16.72762 -16.16550 -15.91220 -15.69620 -15.36124 -15.07537 -14.89590 -14.64559 -14.43574 -14.20964 -13.99732 -13.62157 -13.26169 -13.01912 -12.79104 -12.46745 -12.41835 -12.20660 -11.95802 -11.84995 -11.75421 -11.42974 -11.40772 -11.28842 -11.06523 -10.95274 -10.93486 -10.78147 -10.51543 -10.38164 -10.08272 -10.03417 -9.91794 -9.83383 -9.63763 -9.14897 -8.89734 -8.49538 -8.38521 -6.02798 -4.06652 1.99368 2.35549 3.19399 3.27747 3.29680 3.36471 3.37885 3.38205 3.70024 4.41361 4.51629 4.59728 4.65784 4.68061 4.75817 4.87197 4.91416 4.97639 4.99622 5.01283 5.05057 5.13003 5.17408 5.18141 5.23803 5.32141 5.32599 5.38932 5.46945 5.55932 5.58970 5.63468 5.70424 5.83405 5.99714 6.05175 6.13381 6.21888 6.32759 6.38209 6.65589 6.73674 6.76094 6.86411 6.88740 7.00671 7.37790 7.59211 7.75377 7.96001 8.31885 8.98787 9.12913 9.57035 11.08146 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.002339 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.406250 B =11968.004618 C =12180.140123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.465 5.465 4 C 0.222 3.778 5 C -0.003 4.003 6 H 0.073 0.927 7 C -0.126 4.126 8 C 0.040 3.960 9 C -0.521 4.521 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 N -0.286 5.286 18 N -0.308 5.308 19 C 0.313 3.687 20 N -0.455 5.455 21 C 0.027 3.973 22 C 0.068 3.932 23 O -0.370 6.370 24 C 0.099 3.901 25 H 0.077 0.923 26 C 0.070 3.930 27 O -0.383 6.383 28 C 0.031 3.969 29 C 0.038 3.962 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.013 0.987 40 H 0.261 0.739 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.106 0.894 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.041 0.959 48 H 0.086 0.914 49 H 0.042 0.958 50 H 0.065 0.935 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.212 -10.524 -21.144 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.158 5.158 4 C -0.045 4.045 5 C -0.024 4.024 6 H 0.091 0.909 7 C -0.184 4.184 8 C 0.002 3.998 9 C -0.559 4.559 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.199 1.199 17 N -0.126 5.126 18 N -0.153 5.153 19 C -0.043 4.043 20 N -0.181 5.181 21 C -0.100 4.100 22 C -0.010 4.010 23 O -0.288 6.288 24 C 0.041 3.959 25 H 0.095 0.905 26 C -0.007 4.007 27 O -0.301 6.301 28 C -0.065 4.065 29 C -0.091 4.091 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.124 0.876 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.059 0.941 48 H 0.105 0.895 49 H 0.061 0.939 50 H 0.083 0.917 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.278 -9.431 -21.371 24.783 hybrid contribution -0.369 -0.855 1.282 1.585 sum 7.909 -10.286 -20.089 23.915 Atomic orbital electron populations 1.22135 0.93702 1.03210 1.03588 1.21781 0.96113 0.79028 1.04325 1.46488 1.49667 1.13717 1.05968 1.25698 0.98845 0.87731 0.92197 1.20030 0.99273 1.01242 0.81885 0.90864 1.21683 0.94148 1.01766 1.00837 1.19094 0.91920 0.94353 0.94445 1.21124 1.25394 1.11879 0.97503 0.92329 1.25006 0.95920 0.94964 0.98393 1.69982 1.28684 1.17589 1.36580 0.86600 0.77526 0.78953 0.84947 1.20589 1.21298 1.19890 1.74078 1.19212 1.17662 1.01620 1.74524 1.19210 1.16850 1.04676 1.22009 1.05808 0.89023 0.87480 1.58686 1.10859 1.52196 0.96381 1.22895 0.96780 0.95754 0.94579 1.22700 0.85169 1.01802 0.91285 1.88063 1.21076 1.67536 1.52149 1.22064 0.89510 0.95234 0.89099 0.90495 1.22453 0.95216 0.98837 0.84207 1.87925 1.32908 1.82844 1.26433 1.22757 0.86784 1.00654 0.96343 1.22706 0.89483 1.02729 0.94137 0.90530 0.90906 0.92095 0.88740 0.88804 0.92024 0.90586 0.95010 0.95000 0.96828 0.92910 0.89247 0.91701 0.92032 0.87626 0.92061 0.91540 0.94077 0.89504 0.93922 0.91659 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.11 1.32 6.58 -4.04 -0.03 1.30 16 3 N -0.47 -7.53 2.81 -114.08 -0.32 -7.85 16 4 C 0.22 4.35 6.58 -154.02 -1.01 3.34 16 5 C 0.00 -0.06 2.71 -91.77 -0.25 -0.31 16 6 H 0.07 1.34 6.98 -51.93 -0.36 0.98 16 7 C -0.13 -2.34 8.98 37.16 0.33 -2.01 16 8 C 0.04 1.01 4.43 -27.88 -0.12 0.89 16 9 C -0.52 -13.92 8.41 -34.44 -0.29 -14.21 16 10 H 0.06 1.48 7.05 -52.49 -0.37 1.11 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 13 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 N -0.29 -6.24 12.18 32.99 0.40 -5.84 16 18 N -0.31 -6.11 12.18 30.32 0.37 -5.74 16 19 C 0.31 5.12 6.46 -318.86 -2.06 3.06 16 20 N -0.46 -5.82 4.74 -174.21 -0.83 -6.65 16 21 C 0.03 0.32 5.56 -3.71 -0.02 0.30 16 22 C 0.07 0.65 7.01 37.21 0.26 0.91 16 23 O -0.37 -4.23 10.43 -39.95 -0.42 -4.65 16 24 C 0.10 0.99 3.09 -26.69 -0.08 0.91 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 C 0.07 0.61 5.60 37.15 0.21 0.82 16 27 O -0.38 -3.82 10.67 -39.95 -0.43 -4.25 16 28 C 0.03 0.20 11.01 101.05 1.11 1.32 16 29 C 0.04 0.42 4.86 -3.72 -0.02 0.40 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.03 7.29 -51.93 -0.38 0.65 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.42 6.95 -51.93 -0.36 1.06 16 37 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 48 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 413.53 15.07 6.23 6.23 Total: -1.00 -33.69 413.53 -10.02 -43.71 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -9.06 Total: -1.94 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.68 Total: -3.34 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.36 Total: -51.77 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.84 Total: -8.90 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.69 -10.02 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646717988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.592 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds