Wall clock time and date at job start Tue Mar 31 2020 21:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47375 * 2 1 4 4 C 1.36737 * 127.14091 * 88.64475 * 3 2 1 5 5 C 1.50697 * 126.34538 * 359.97438 * 4 3 2 6 6 H 1.09000 * 109.47419 * 359.71771 * 5 4 3 7 7 C 1.53004 * 109.47084 * 119.71781 * 5 4 3 8 8 C 1.53002 * 109.47291 * 239.71211 * 5 4 3 9 9 C 1.50699 * 109.47070 * 174.99937 * 8 5 4 10 10 H 1.07992 * 120.00186 * 0.02562 * 9 8 5 11 11 C 1.37874 * 119.99885 * 180.02562 * 9 8 5 12 12 N 1.31518 * 119.99968 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00192 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46867 * 90.00008 * 13 11 9 15 15 H 1.48496 * 109.47181 * 209.99763 * 13 11 9 16 16 H 1.48498 * 109.46895 * 330.00064 * 13 11 9 17 17 N 1.30299 * 107.30475 * 179.73851 * 4 3 2 18 18 N 1.28523 * 110.05675 * 0.25995 * 17 4 3 19 19 C 1.31217 * 109.85731 * 0.02562 * 18 17 4 20 20 N 1.38590 * 126.47204 * 180.02562 * 19 18 17 21 21 C 1.47011 * 110.99937 * 299.69730 * 20 19 18 22 22 C 1.53099 * 109.25934 * 182.39302 * 21 20 19 23 23 O 1.43014 * 109.25619 * 303.14887 * 22 21 20 24 24 C 1.43016 * 113.73799 * 58.66876 * 23 22 21 25 25 H 1.09000 * 109.50394 * 61.30601 * 24 23 22 26 26 C 1.52993 * 109.50464 * 181.39382 * 24 23 22 27 27 O 1.42908 * 109.47157 * 294.99839 * 26 24 23 28 28 C 1.42900 * 113.99952 * 180.02562 * 27 26 24 29 29 C 1.47010 * 111.00015 * 63.32771 * 20 19 18 30 30 H 1.08999 * 109.47311 * 182.83636 * 1 2 3 31 31 H 1.09005 * 109.47071 * 302.83692 * 1 2 3 32 32 H 1.09004 * 109.47250 * 62.83292 * 1 2 3 33 33 H 1.08997 * 109.47325 * 239.99625 * 2 1 3 34 34 H 1.09003 * 109.47206 * 119.99335 * 2 1 3 35 35 H 1.08999 * 109.47522 * 59.99680 * 7 5 4 36 36 H 1.08994 * 109.47003 * 180.02562 * 7 5 4 37 37 H 1.09008 * 109.46849 * 300.00021 * 7 5 4 38 38 H 1.08997 * 109.47405 * 295.00219 * 8 5 4 39 39 H 1.09008 * 109.46763 * 55.00253 * 8 5 4 40 40 H 0.97000 * 120.00078 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.50743 * 302.32706 * 21 20 19 42 42 H 1.08998 * 109.51153 * 62.45173 * 21 20 19 43 43 H 1.08996 * 109.50484 * 63.08644 * 22 21 20 44 44 H 1.09004 * 109.50798 * 183.16890 * 22 21 20 45 45 H 1.08995 * 109.47710 * 55.00410 * 26 24 23 46 46 H 1.09002 * 109.47269 * 175.00240 * 26 24 23 47 47 H 1.08996 * 109.47263 * 59.99993 * 28 27 26 48 48 H 1.08991 * 109.47325 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.47114 * 300.00375 * 28 27 26 50 50 H 1.08994 * 109.50654 * 297.54589 * 29 20 19 51 51 H 1.09002 * 109.50283 * 57.67459 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2693 2.1681 1.0897 5 6 2.0937 1.7759 2.5341 6 1 1.7244 0.7519 2.5902 7 6 3.4392 1.8731 3.2561 8 6 1.0886 2.7178 3.1999 9 6 0.8201 2.2521 4.6078 10 1 1.3170 1.3726 4.9896 11 6 -0.0599 2.9489 5.4083 12 7 -0.6647 4.0203 4.9435 13 14 -0.3922 2.3721 7.1537 14 1 0.5730 3.0165 8.0801 15 1 -1.7760 2.7445 7.5431 16 1 -0.2378 0.8969 7.2253 17 7 2.6931 3.3183 0.6478 18 7 2.7216 3.3135 -0.6371 19 6 2.3136 2.1506 -1.0876 20 7 2.2094 1.7726 -2.4169 21 6 1.2734 2.6450 -3.1408 22 6 1.1430 2.1568 -4.5860 23 8 2.4375 2.1294 -5.1933 24 6 3.3743 1.2888 -4.5142 25 1 3.0123 0.2607 -4.5210 26 6 4.7292 1.3581 -5.2215 27 8 4.6098 0.8068 -6.5345 28 6 5.8261 0.8229 -7.2844 29 6 3.5273 1.7682 -3.0683 30 1 -0.3634 -1.0264 0.0509 31 1 -0.3633 0.5573 0.8635 32 1 -0.3634 0.4692 -0.9143 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.8086 2.8970 3.2000 36 1 3.3123 1.5889 4.3007 37 1 4.1554 1.2020 2.7817 38 1 1.4974 3.7279 3.2231 39 1 0.1577 2.7155 2.6327 40 1 -1.2835 4.5108 5.5068 41 1 0.2974 2.6133 -2.6565 42 1 1.6502 3.6677 -3.1348 43 1 0.7157 1.1541 -4.5943 44 1 0.4938 2.8335 -5.1417 45 1 5.0498 2.3975 -5.2915 46 1 5.4650 0.7885 -4.6538 47 1 6.5844 0.2420 -6.7594 48 1 5.6520 0.3884 -8.2686 49 1 6.1699 1.8511 -7.3972 50 1 3.9402 2.7769 -3.0610 51 1 4.1966 1.0964 -2.5309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646717988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:16 Heat of formation + Delta-G solvation = -31.103295 kcal Electronic energy + Delta-G solvation = -30549.511127 eV Core-core repulsion = 26484.804358 eV Total energy + Delta-G solvation = -4064.706769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.10113 -40.90956 -38.66667 -37.40163 -36.92365 -36.25030 -34.23458 -33.35860 -31.54687 -30.79414 -29.22411 -28.78514 -27.59419 -26.15975 -25.88258 -24.96690 -24.25319 -23.66979 -22.15172 -21.45247 -20.56726 -18.68457 -18.41367 -17.98196 -17.61594 -17.49110 -17.04350 -16.50689 -16.45130 -16.14139 -16.06465 -15.90211 -15.76438 -15.20236 -14.97014 -14.91787 -14.70303 -14.33346 -14.06888 -13.67813 -13.47823 -13.28026 -13.16432 -13.01060 -12.78548 -12.70197 -12.68723 -12.55118 -12.48732 -12.33806 -12.26015 -12.08794 -11.93624 -11.77364 -11.58690 -11.46308 -11.18370 -11.12458 -10.84826 -10.65429 -10.55040 -10.05492 -10.00968 -8.16323 -6.28010 0.64176 1.13784 1.44146 1.45652 1.55982 1.73466 2.35832 2.44118 2.62268 2.85717 3.17858 3.38714 3.62550 3.68801 3.73708 3.91063 3.92514 3.96541 4.04373 4.07827 4.21698 4.23694 4.30346 4.32813 4.40715 4.44617 4.46588 4.52149 4.56270 4.57314 4.58572 4.60377 4.71632 4.79922 4.85993 4.88872 4.91458 5.06579 5.11035 5.15893 5.18560 5.35403 5.37790 5.45537 5.48259 5.68619 5.83312 6.05640 6.11969 6.20203 6.20608 6.87807 7.41229 7.67706 8.96046 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.002339 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.406250 B =11968.004618 C =12180.140123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 N -0.459 5.459 4 C 0.210 3.790 5 C 0.008 3.992 6 H 0.097 0.903 7 C -0.119 4.119 8 C 0.053 3.947 9 C -0.526 4.526 10 H 0.078 0.922 11 C -0.003 4.003 12 N -0.937 5.937 13 Si 0.967 3.033 14 H -0.275 1.275 15 H -0.289 1.289 16 H -0.254 1.254 17 N -0.329 5.329 18 N -0.347 5.347 19 C 0.334 3.666 20 N -0.445 5.445 21 C 0.027 3.973 22 C 0.075 3.925 23 O -0.387 6.387 24 C 0.105 3.895 25 H 0.086 0.914 26 C 0.070 3.930 27 O -0.407 6.407 28 C 0.025 3.975 29 C 0.040 3.960 30 H 0.110 0.890 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.064 0.936 38 H -0.012 1.012 39 H -0.022 1.022 40 H 0.261 0.739 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.124 0.876 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.055 0.945 48 H 0.097 0.903 49 H 0.046 0.954 50 H 0.047 0.953 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.893 -13.971 -21.810 27.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.019 4.019 3 N -0.151 5.151 4 C -0.059 4.059 5 C -0.013 4.013 6 H 0.115 0.885 7 C -0.177 4.177 8 C 0.015 3.985 9 C -0.564 4.564 10 H 0.096 0.904 11 C -0.201 4.201 12 N -0.577 5.577 13 Si 0.791 3.209 14 H -0.201 1.201 15 H -0.215 1.215 16 H -0.177 1.177 17 N -0.169 5.169 18 N -0.190 5.190 19 C -0.024 4.024 20 N -0.171 5.171 21 C -0.100 4.100 22 C -0.002 4.002 23 O -0.306 6.306 24 C 0.047 3.953 25 H 0.104 0.896 26 C -0.007 4.007 27 O -0.326 6.326 28 C -0.071 4.071 29 C -0.087 4.087 30 H 0.128 0.872 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.128 0.872 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.006 0.994 39 H -0.004 1.004 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.142 0.858 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.073 0.927 48 H 0.115 0.885 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.975 -12.911 -22.051 27.083 hybrid contribution -0.587 0.221 1.345 1.484 sum 8.387 -12.690 -20.706 25.692 Atomic orbital electron populations 1.22101 0.93512 1.04661 1.01739 1.22230 0.96216 0.76878 1.06615 1.46670 1.48792 1.14913 1.04758 1.25410 0.99722 0.88030 0.92701 1.19785 0.98624 1.00730 0.82149 0.88494 1.21603 0.93872 1.01300 1.00922 1.18822 0.91582 0.93536 0.94604 1.21564 1.24863 1.12109 0.97904 0.90415 1.26024 0.95813 0.94985 1.03259 1.70157 1.29765 1.19316 1.38473 0.85421 0.77031 0.79438 0.78996 1.20111 1.21516 1.17736 1.73972 1.20703 1.19335 1.02868 1.74436 1.21496 1.19043 1.04065 1.22378 1.03075 0.88019 0.88881 1.58984 1.11907 1.51541 0.94654 1.22952 0.96192 0.94682 0.96182 1.22785 0.84938 1.03065 0.89415 1.88058 1.21885 1.68028 1.52603 1.22098 0.90057 0.95222 0.87954 0.89566 1.22488 0.94866 0.99055 0.84281 1.87875 1.34782 1.82997 1.26955 1.22939 0.86100 1.01321 0.96697 1.22755 0.88598 1.02161 0.95223 0.87168 0.94490 0.92361 0.85770 0.87180 0.94174 0.90586 0.91742 0.99383 1.00352 0.93030 0.89486 0.93872 0.90420 0.85784 0.92503 0.89367 0.92651 0.88462 0.93582 0.93440 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 10.24 71.98 0.74 -2.76 16 2 C 0.10 2.16 6.58 86.38 0.57 2.73 16 3 N -0.46 -14.50 2.81 -514.85 -1.45 -15.94 16 4 C 0.21 8.36 6.58 137.64 0.91 9.26 16 5 C 0.01 0.32 2.71 -11.54 -0.03 0.29 16 6 H 0.10 3.41 6.98 -2.39 -0.02 3.39 16 7 C -0.12 -4.34 8.98 71.98 0.65 -3.70 16 8 C 0.05 2.79 4.43 29.85 0.13 2.92 16 9 C -0.53 -28.41 8.41 25.60 0.22 -28.20 16 10 H 0.08 3.82 7.05 -2.91 -0.02 3.80 16 11 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 12 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 13 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 14 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 17 N -0.33 -14.99 12.18 -49.54 -0.60 -15.60 16 18 N -0.35 -14.21 12.18 -58.00 -0.71 -14.92 16 19 C 0.33 10.85 6.46 260.11 1.68 12.53 16 20 N -0.44 -10.85 4.74 -705.08 -3.35 -14.20 16 21 C 0.03 0.63 5.56 86.32 0.48 1.11 16 22 C 0.07 1.30 7.01 72.02 0.50 1.80 16 23 O -0.39 -8.25 10.43 -144.46 -1.51 -9.76 16 24 C 0.11 1.89 3.09 30.62 0.09 1.98 16 25 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 26 C 0.07 1.10 5.60 71.98 0.40 1.50 16 27 O -0.41 -7.37 10.67 -144.46 -1.54 -8.91 16 28 C 0.03 0.28 11.01 113.37 1.25 1.53 16 29 C 0.04 0.85 4.86 86.31 0.42 1.27 16 30 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.06 8.14 -2.38 -0.02 1.05 16 32 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.11 2.04 7.29 -2.39 -0.02 2.02 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 2.74 6.95 -2.39 -0.02 2.73 16 37 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 38 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 39 H -0.02 -1.29 8.14 -2.38 -0.02 -1.31 16 40 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -77.14 413.53 2.52 -74.63 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.89 Total: 14.38 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 8.47 Total: 2.56 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -5.82 Total: -118.03 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -3.05 Total: -18.67 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -77.14 2.52 -74.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646717988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.522 kcal (2) G-P(sol) polarization free energy of solvation -77.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds