Wall clock time and date at job start Tue Mar 31 2020 21:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47261 * 2 1 4 4 C 1.36734 * 127.13907 * 84.81462 * 3 2 1 5 5 C 1.50697 * 126.34322 * 359.97438 * 4 3 2 6 6 H 1.09002 * 109.47786 * 359.71874 * 5 4 3 7 7 C 1.53000 * 109.47032 * 119.71621 * 5 4 3 8 8 C 1.53004 * 109.47250 * 239.71196 * 5 4 3 9 9 C 1.50703 * 109.47300 * 175.00346 * 8 5 4 10 10 H 1.08002 * 119.99467 * 359.97438 * 9 8 5 11 11 C 1.37871 * 120.00229 * 180.02562 * 9 8 5 12 12 N 1.31516 * 120.00000 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00344 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46674 * 60.00218 * 13 11 9 15 15 H 1.48499 * 109.47424 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47202 * 300.00301 * 13 11 9 17 17 N 1.30287 * 107.30540 * 179.73642 * 4 3 2 18 18 N 1.28527 * 110.05861 * 0.25980 * 17 4 3 19 19 C 1.31217 * 109.85672 * 0.02562 * 18 17 4 20 20 N 1.38584 * 126.47387 * 179.97438 * 19 18 17 21 21 C 1.47012 * 110.99814 * 36.24416 * 20 19 18 22 22 C 1.53099 * 109.25702 * 177.60823 * 21 20 19 23 23 O 1.43013 * 109.26022 * 56.84585 * 22 21 20 24 24 C 1.43009 * 113.74032 * 301.33335 * 23 22 21 25 25 H 1.08998 * 109.50905 * 298.72807 * 24 23 22 26 26 C 1.53007 * 109.50865 * 178.64494 * 24 23 22 27 27 O 1.42901 * 109.46855 * 64.99753 * 26 24 23 28 28 C 1.42899 * 113.99509 * 180.02562 * 27 26 24 29 29 C 1.47016 * 110.99983 * 272.61006 * 20 19 18 30 30 H 1.09004 * 109.46831 * 305.21170 * 1 2 3 31 31 H 1.09000 * 109.47163 * 65.21257 * 1 2 3 32 32 H 1.08997 * 109.46936 * 185.20997 * 1 2 3 33 33 H 1.09004 * 109.46556 * 239.99761 * 2 1 3 34 34 H 1.09001 * 109.46994 * 120.00401 * 2 1 3 35 35 H 1.08998 * 109.47916 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47335 * 299.99711 * 7 5 4 37 37 H 1.09000 * 109.47236 * 59.99993 * 7 5 4 38 38 H 1.08996 * 109.47255 * 295.00374 * 8 5 4 39 39 H 1.08997 * 109.46688 * 55.00373 * 8 5 4 40 40 H 0.97002 * 120.00313 * 179.97438 * 12 11 9 41 41 H 1.08999 * 109.51068 * 297.54123 * 21 20 19 42 42 H 1.09001 * 109.50533 * 57.67607 * 21 20 19 43 43 H 1.09002 * 109.50723 * 176.78835 * 22 21 20 44 44 H 1.09003 * 109.50801 * 296.87215 * 22 21 20 45 45 H 1.08994 * 109.47007 * 185.00462 * 26 24 23 46 46 H 1.09006 * 109.46856 * 305.00009 * 26 24 23 47 47 H 1.08999 * 109.47275 * 299.99696 * 28 27 26 48 48 H 1.09003 * 109.47420 * 60.00691 * 28 27 26 49 49 H 1.09006 * 109.47022 * 180.02562 * 28 27 26 50 50 H 1.08998 * 109.50446 * 302.32359 * 29 20 19 51 51 H 1.08998 * 109.50501 * 62.45928 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2007 2.1923 1.0855 5 6 1.9343 1.8321 2.5244 6 1 1.5615 0.8093 2.5799 7 6 3.2316 1.9463 3.3273 8 6 0.8898 2.7879 3.1044 9 6 0.5328 2.3535 4.5027 10 1 1.0036 1.4825 4.9342 11 6 -0.3954 3.0673 5.2305 12 7 -0.9697 4.1270 4.7045 13 14 -0.8383 2.5284 6.9634 14 1 0.3783 2.5497 7.8145 15 1 -1.8529 3.4554 7.5260 16 1 -1.3930 1.1513 6.9270 17 7 2.6523 3.3326 0.6458 18 7 2.7617 3.2993 -0.6343 19 6 2.3821 2.1264 -1.0837 20 7 2.3607 1.7192 -2.4082 21 6 3.4986 2.2807 -3.1505 22 6 3.4696 1.7591 -4.5896 23 8 2.2145 2.0943 -5.1877 24 6 1.0844 1.5629 -4.4907 25 1 1.1391 0.4743 -4.4850 26 6 -0.2021 2.0061 -5.1904 27 8 -0.2576 1.4279 -6.4960 28 6 -1.4263 1.7810 -7.2387 29 6 1.0892 2.0826 -3.0506 30 1 -0.3633 0.5926 0.8397 31 1 -0.3633 0.4308 -0.9330 32 1 -0.3633 -1.0234 0.0933 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.0390 1.6862 4.3681 36 1 3.9758 1.2653 2.9142 37 1 3.6045 2.9690 3.2719 38 1 1.2970 3.7986 3.1309 39 1 -0.0034 2.7723 2.4800 40 1 -1.6230 4.6290 5.2164 41 1 3.4284 3.3685 -3.1562 42 1 4.4301 1.9780 -2.6724 43 1 4.2782 2.2172 -5.1592 44 1 3.5945 0.6763 -4.5869 45 1 -1.0636 1.6761 -4.6098 46 1 -0.2147 3.0929 -5.2734 47 1 -2.3134 1.4466 -6.7009 48 1 -1.4638 2.8632 -7.3643 49 1 -1.3932 1.3023 -8.2175 50 1 0.2621 1.6352 -2.4995 51 1 0.9805 3.1672 -3.0547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646717992.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:21 Heat of formation + Delta-G solvation = -9.963207 kcal Electronic energy + Delta-G solvation = -30713.081301 eV Core-core repulsion = 26649.291235 eV Total energy + Delta-G solvation = -4063.790066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.70390 -40.01445 -37.95553 -36.14126 -35.68988 -34.79235 -32.56728 -32.23475 -30.44978 -29.44113 -28.25358 -27.05179 -26.69619 -25.25626 -24.29448 -23.81158 -23.30566 -22.00632 -21.12419 -20.32370 -19.07604 -17.42410 -17.14194 -16.85169 -16.69427 -16.14578 -15.89693 -15.72237 -15.31349 -15.15828 -14.98616 -14.53819 -14.42582 -14.27676 -13.96688 -13.66865 -13.26116 -13.03497 -12.77542 -12.49001 -12.44667 -12.16771 -11.93724 -11.84278 -11.78693 -11.43379 -11.40871 -11.26218 -11.04673 -10.97131 -10.94947 -10.77710 -10.52646 -10.34621 -10.10428 -10.02211 -9.93548 -9.83636 -9.62002 -9.17297 -9.08447 -8.39514 -8.29904 -6.03205 -4.07108 1.99165 2.38129 3.15820 3.29990 3.32595 3.35666 3.36917 3.38226 3.69629 4.40980 4.49995 4.59295 4.64539 4.67024 4.75999 4.86955 4.90318 4.96911 4.99268 5.02070 5.07967 5.11214 5.16042 5.18334 5.23709 5.32130 5.34601 5.38898 5.45910 5.54204 5.58453 5.60932 5.67356 5.83425 6.00053 6.04726 6.09813 6.20495 6.28943 6.43751 6.66373 6.75268 6.76769 6.86652 6.88796 7.01567 7.37175 7.58343 7.75077 7.95611 8.31559 8.98179 9.14652 9.56587 11.07758 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.002635 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.338423 B =10624.253411 C =11471.212023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 N -0.469 5.469 4 C 0.221 3.779 5 C -0.003 4.003 6 H 0.073 0.927 7 C -0.126 4.126 8 C 0.040 3.960 9 C -0.521 4.521 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 N -0.286 5.286 18 N -0.311 5.311 19 C 0.317 3.683 20 N -0.454 5.454 21 C 0.032 3.968 22 C 0.066 3.934 23 O -0.370 6.370 24 C 0.101 3.899 25 H 0.078 0.922 26 C 0.069 3.931 27 O -0.382 6.382 28 C 0.031 3.969 29 C 0.032 3.968 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.061 0.939 38 H 0.032 0.968 39 H 0.013 0.987 40 H 0.262 0.738 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.042 0.958 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 -10.052 -20.561 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.162 5.162 4 C -0.046 4.046 5 C -0.024 4.024 6 H 0.091 0.909 7 C -0.184 4.184 8 C 0.002 3.998 9 C -0.559 4.559 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.529 5.529 13 Si 0.720 3.280 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.203 1.203 17 N -0.125 5.125 18 N -0.156 5.156 19 C -0.039 4.039 20 N -0.179 5.179 21 C -0.096 4.096 22 C -0.011 4.011 23 O -0.288 6.288 24 C 0.042 3.958 25 H 0.096 0.904 26 C -0.008 4.008 27 O -0.301 6.301 28 C -0.066 4.066 29 C -0.096 4.096 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.124 0.876 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.105 0.895 50 H 0.108 0.892 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.692 -9.023 -20.796 22.968 hybrid contribution -1.169 -0.753 1.258 1.875 sum 2.523 -9.776 -19.538 21.992 Atomic orbital electron populations 1.22199 0.93842 1.03479 1.03411 1.21804 0.95876 0.79164 1.04628 1.46440 1.49989 1.13605 1.06198 1.25664 0.99254 0.87384 0.92278 1.20020 0.99081 1.01433 0.81854 0.90889 1.21683 0.94523 1.01723 1.00521 1.19089 0.91427 0.94239 0.95028 1.21092 1.23417 1.12361 0.99069 0.92380 1.24997 0.96132 0.94948 0.98141 1.69969 1.27882 1.17644 1.37418 0.86667 0.78266 0.78353 0.84761 1.20124 1.21321 1.20303 1.74057 1.18355 1.18238 1.01813 1.74539 1.21122 1.15126 1.04771 1.22090 1.05484 0.88800 0.87572 1.58711 1.04295 1.58349 0.96542 1.22804 0.92861 0.99865 0.94068 1.22726 0.86481 1.00295 0.91606 1.88065 1.13568 1.75684 1.51505 1.22048 0.86206 0.98715 0.88812 0.90416 1.22459 0.95550 0.98309 0.84469 1.87916 1.42689 1.72239 1.27258 1.22764 0.87429 0.99948 0.96416 1.22812 0.91186 1.00995 0.94620 0.90618 0.92452 0.90350 0.88505 0.88732 0.90603 0.94967 0.92033 0.95002 0.96887 0.92849 0.91384 0.89096 0.87603 0.92097 0.91454 0.92067 0.94022 0.93904 0.89499 0.89243 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 2 C 0.11 1.28 6.50 -4.04 -0.03 1.26 16 3 N -0.47 -7.57 2.81 -114.08 -0.32 -7.89 16 4 C 0.22 4.33 6.58 -154.03 -1.01 3.32 16 5 C 0.00 -0.06 2.71 -91.77 -0.25 -0.30 16 6 H 0.07 1.33 7.08 -51.93 -0.37 0.97 16 7 C -0.13 -2.36 8.99 37.16 0.33 -2.03 16 8 C 0.04 1.01 4.43 -27.88 -0.12 0.89 16 9 C -0.52 -13.90 8.41 -34.44 -0.29 -14.19 16 10 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 13 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 N -0.29 -6.25 12.18 32.99 0.40 -5.85 16 18 N -0.31 -6.19 11.63 30.32 0.35 -5.83 16 19 C 0.32 5.20 6.75 -318.86 -2.15 3.05 16 20 N -0.45 -5.81 4.72 -174.20 -0.82 -6.64 16 21 C 0.03 0.36 5.33 -3.71 -0.02 0.34 16 22 C 0.07 0.62 7.01 37.21 0.26 0.88 16 23 O -0.37 -4.25 10.43 -39.95 -0.42 -4.66 16 24 C 0.10 1.03 3.09 -26.68 -0.08 0.95 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 C 0.07 0.64 5.61 37.16 0.21 0.85 16 27 O -0.38 -3.96 10.67 -39.95 -0.43 -4.38 16 28 C 0.03 0.22 11.01 101.05 1.11 1.33 16 29 C 0.03 0.37 4.87 -3.71 -0.02 0.35 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.62 6.91 -51.93 -0.36 0.27 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.97 8.11 -51.93 -0.42 0.54 16 34 H 0.09 1.03 7.47 -51.93 -0.39 0.64 16 35 H 0.08 1.42 6.95 -51.93 -0.36 1.06 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.07 0.89 7.96 -51.93 -0.41 0.48 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.98 6.90 -51.93 -0.36 0.63 16 51 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 410.57 15.07 6.19 6.19 Total: -1.00 -33.66 410.57 -10.04 -43.70 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -8.94 Total: -1.62 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.78 Total: -3.31 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.35 Total: -51.86 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.84 Total: -9.05 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.66 -10.04 -43.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646717992.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.739 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds