Wall clock time and date at job start Tue Mar 31 2020 21:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47261 * 2 1 4 4 C 1.36734 * 127.13907 * 84.81462 * 3 2 1 5 5 C 1.50697 * 126.34322 * 359.97438 * 4 3 2 6 6 H 1.09002 * 109.47786 * 359.71874 * 5 4 3 7 7 C 1.53000 * 109.47032 * 119.71621 * 5 4 3 8 8 C 1.53004 * 109.47250 * 239.71196 * 5 4 3 9 9 C 1.50703 * 109.47300 * 175.00346 * 8 5 4 10 10 H 1.08002 * 119.99467 * 359.97438 * 9 8 5 11 11 C 1.37871 * 120.00229 * 180.02562 * 9 8 5 12 12 N 1.31516 * 120.00000 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00344 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46674 * 60.00218 * 13 11 9 15 15 H 1.48499 * 109.47424 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47202 * 300.00301 * 13 11 9 17 17 N 1.30287 * 107.30540 * 179.73642 * 4 3 2 18 18 N 1.28527 * 110.05861 * 0.25980 * 17 4 3 19 19 C 1.31217 * 109.85672 * 0.02562 * 18 17 4 20 20 N 1.38584 * 126.47387 * 179.97438 * 19 18 17 21 21 C 1.47012 * 110.99814 * 36.24416 * 20 19 18 22 22 C 1.53099 * 109.25702 * 177.60823 * 21 20 19 23 23 O 1.43013 * 109.26022 * 56.84585 * 22 21 20 24 24 C 1.43009 * 113.74032 * 301.33335 * 23 22 21 25 25 H 1.08998 * 109.50905 * 298.72807 * 24 23 22 26 26 C 1.53007 * 109.50865 * 178.64494 * 24 23 22 27 27 O 1.42901 * 109.46855 * 64.99753 * 26 24 23 28 28 C 1.42899 * 113.99509 * 180.02562 * 27 26 24 29 29 C 1.47016 * 110.99983 * 272.61006 * 20 19 18 30 30 H 1.09004 * 109.46831 * 305.21170 * 1 2 3 31 31 H 1.09000 * 109.47163 * 65.21257 * 1 2 3 32 32 H 1.08997 * 109.46936 * 185.20997 * 1 2 3 33 33 H 1.09004 * 109.46556 * 239.99761 * 2 1 3 34 34 H 1.09001 * 109.46994 * 120.00401 * 2 1 3 35 35 H 1.08998 * 109.47916 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47335 * 299.99711 * 7 5 4 37 37 H 1.09000 * 109.47236 * 59.99993 * 7 5 4 38 38 H 1.08996 * 109.47255 * 295.00374 * 8 5 4 39 39 H 1.08997 * 109.46688 * 55.00373 * 8 5 4 40 40 H 0.97002 * 120.00313 * 179.97438 * 12 11 9 41 41 H 1.08999 * 109.51068 * 297.54123 * 21 20 19 42 42 H 1.09001 * 109.50533 * 57.67607 * 21 20 19 43 43 H 1.09002 * 109.50723 * 176.78835 * 22 21 20 44 44 H 1.09003 * 109.50801 * 296.87215 * 22 21 20 45 45 H 1.08994 * 109.47007 * 185.00462 * 26 24 23 46 46 H 1.09006 * 109.46856 * 305.00009 * 26 24 23 47 47 H 1.08999 * 109.47275 * 299.99696 * 28 27 26 48 48 H 1.09003 * 109.47420 * 60.00691 * 28 27 26 49 49 H 1.09006 * 109.47022 * 180.02562 * 28 27 26 50 50 H 1.08998 * 109.50446 * 302.32359 * 29 20 19 51 51 H 1.08998 * 109.50501 * 62.45928 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2007 2.1923 1.0855 5 6 1.9343 1.8321 2.5244 6 1 1.5615 0.8093 2.5799 7 6 3.2316 1.9463 3.3273 8 6 0.8898 2.7879 3.1044 9 6 0.5328 2.3535 4.5027 10 1 1.0036 1.4825 4.9342 11 6 -0.3954 3.0673 5.2305 12 7 -0.9697 4.1270 4.7045 13 14 -0.8383 2.5284 6.9634 14 1 0.3783 2.5497 7.8145 15 1 -1.8529 3.4554 7.5260 16 1 -1.3930 1.1513 6.9270 17 7 2.6523 3.3326 0.6458 18 7 2.7617 3.2993 -0.6343 19 6 2.3821 2.1264 -1.0837 20 7 2.3607 1.7192 -2.4082 21 6 3.4986 2.2807 -3.1505 22 6 3.4696 1.7591 -4.5896 23 8 2.2145 2.0943 -5.1877 24 6 1.0844 1.5629 -4.4907 25 1 1.1391 0.4743 -4.4850 26 6 -0.2021 2.0061 -5.1904 27 8 -0.2576 1.4279 -6.4960 28 6 -1.4263 1.7810 -7.2387 29 6 1.0892 2.0826 -3.0506 30 1 -0.3633 0.5926 0.8397 31 1 -0.3633 0.4308 -0.9330 32 1 -0.3633 -1.0234 0.0933 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.0390 1.6862 4.3681 36 1 3.9758 1.2653 2.9142 37 1 3.6045 2.9690 3.2719 38 1 1.2970 3.7986 3.1309 39 1 -0.0034 2.7723 2.4800 40 1 -1.6230 4.6290 5.2164 41 1 3.4284 3.3685 -3.1562 42 1 4.4301 1.9780 -2.6724 43 1 4.2782 2.2172 -5.1592 44 1 3.5945 0.6763 -4.5869 45 1 -1.0636 1.6761 -4.6098 46 1 -0.2147 3.0929 -5.2734 47 1 -2.3134 1.4466 -6.7009 48 1 -1.4638 2.8632 -7.3643 49 1 -1.3932 1.3023 -8.2175 50 1 0.2621 1.6352 -2.4995 51 1 0.9805 3.1672 -3.0547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646717992.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:20 Heat of formation + Delta-G solvation = -30.767014 kcal Electronic energy + Delta-G solvation = -30713.983422 eV Core-core repulsion = 26649.291235 eV Total energy + Delta-G solvation = -4064.692187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.10152 -40.92581 -38.68737 -37.40368 -36.97087 -36.23401 -34.23010 -33.38118 -31.56933 -30.75207 -29.25368 -28.83511 -27.58197 -26.20302 -25.81298 -25.02139 -24.37589 -23.48861 -22.20694 -21.44265 -20.56307 -18.68459 -18.43901 -17.99618 -17.63238 -17.47477 -17.04285 -16.52469 -16.47935 -16.15564 -16.06894 -16.04899 -15.61148 -15.26539 -14.98309 -14.96080 -14.67785 -14.32868 -14.07388 -13.69045 -13.49948 -13.32399 -13.13005 -12.99404 -12.81949 -12.72745 -12.65990 -12.57107 -12.44115 -12.32189 -12.28110 -12.09644 -11.94449 -11.81372 -11.58589 -11.42560 -11.20138 -11.13641 -10.88134 -10.68005 -10.54283 -10.35224 -9.71158 -8.16197 -6.27914 0.64828 1.15216 1.44025 1.47161 1.54424 1.73500 2.35161 2.44100 2.60935 2.82897 3.17945 3.39276 3.61058 3.67793 3.70518 3.88698 3.89566 3.93396 4.01966 4.07339 4.21266 4.23234 4.30115 4.32775 4.39343 4.41967 4.43347 4.52627 4.53325 4.55866 4.57519 4.59844 4.72679 4.79659 4.85928 4.87387 4.91912 5.05167 5.10015 5.15485 5.18972 5.32997 5.38766 5.45805 5.49059 5.68791 5.83338 6.04839 6.11193 6.17773 6.20497 6.87659 7.41372 7.69353 8.96051 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.002635 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.338423 B =10624.253411 C =11471.212023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.462 5.462 4 C 0.209 3.791 5 C 0.009 3.991 6 H 0.097 0.903 7 C -0.119 4.119 8 C 0.053 3.947 9 C -0.527 4.527 10 H 0.077 0.923 11 C -0.002 4.002 12 N -0.937 5.937 13 Si 0.965 3.035 14 H -0.265 1.265 15 H -0.291 1.291 16 H -0.261 1.261 17 N -0.329 5.329 18 N -0.350 5.350 19 C 0.336 3.664 20 N -0.442 5.442 21 C 0.031 3.969 22 C 0.072 3.928 23 O -0.387 6.387 24 C 0.108 3.892 25 H 0.089 0.911 26 C 0.069 3.931 27 O -0.404 6.404 28 C 0.025 3.975 29 C 0.035 3.965 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.039 0.961 38 H -0.013 1.013 39 H -0.021 1.021 40 H 0.261 0.739 41 H 0.046 0.954 42 H 0.095 0.905 43 H 0.127 0.873 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.045 0.955 49 H 0.099 0.901 50 H 0.097 0.903 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 -13.439 -21.197 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.155 5.155 4 C -0.060 4.060 5 C -0.012 4.012 6 H 0.115 0.885 7 C -0.177 4.177 8 C 0.015 3.985 9 C -0.565 4.565 10 H 0.095 0.905 11 C -0.199 4.199 12 N -0.578 5.578 13 Si 0.790 3.210 14 H -0.190 1.190 15 H -0.217 1.217 16 H -0.186 1.186 17 N -0.168 5.168 18 N -0.194 5.194 19 C -0.021 4.021 20 N -0.168 5.168 21 C -0.096 4.096 22 C -0.005 4.005 23 O -0.306 6.306 24 C 0.049 3.951 25 H 0.107 0.893 26 C -0.008 4.008 27 O -0.323 6.323 28 C -0.071 4.071 29 C -0.093 4.093 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.006 0.994 39 H -0.003 1.003 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.113 0.887 43 H 0.145 0.855 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.117 0.883 50 H 0.115 0.885 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.862 -12.444 -21.446 25.094 hybrid contribution -1.234 0.303 1.312 1.827 sum 2.627 -12.141 -20.134 23.658 Atomic orbital electron populations 1.22175 0.93434 1.04840 1.01932 1.22257 0.96170 0.76938 1.06808 1.46619 1.49160 1.14783 1.04939 1.25374 1.00046 0.87733 0.92797 1.19773 0.98201 1.00910 0.82335 0.88505 1.21603 0.94445 1.01245 1.00437 1.18816 0.91413 0.93413 0.94852 1.21533 1.22940 1.12573 0.99472 0.90480 1.26002 0.96173 0.94885 1.02859 1.70147 1.28888 1.19329 1.39399 0.85495 0.78108 0.78353 0.79071 1.18974 1.21721 1.18565 1.73951 1.19842 1.19964 1.03075 1.74446 1.23443 1.17297 1.04174 1.22459 1.02841 0.87831 0.88976 1.58982 1.05355 1.57553 0.94863 1.22897 0.92493 0.98691 0.95552 1.22852 0.86354 1.01365 0.89891 1.88059 1.14447 1.76140 1.51951 1.22047 0.86452 0.99084 0.87471 0.89283 1.22489 0.95708 0.98013 0.84631 1.87868 1.44252 1.72567 1.27661 1.22948 0.86895 1.00401 0.96850 1.22836 0.90683 0.99875 0.95874 0.94319 0.92165 0.87023 0.85698 0.87177 0.90605 0.91823 0.94196 0.99419 1.00269 0.93006 0.93557 0.88697 0.85486 0.90417 0.89631 0.92659 0.92790 0.93626 0.88266 0.88507 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 10.24 71.98 0.74 -2.70 16 2 C 0.10 2.09 6.50 86.38 0.56 2.65 16 3 N -0.46 -14.58 2.81 -514.85 -1.45 -16.03 16 4 C 0.21 8.35 6.58 137.64 0.91 9.25 16 5 C 0.01 0.35 2.71 -11.54 -0.03 0.32 16 6 H 0.10 3.41 7.08 -2.39 -0.02 3.39 16 7 C -0.12 -4.40 8.99 71.98 0.65 -3.75 16 8 C 0.05 2.81 4.43 29.85 0.13 2.94 16 9 C -0.53 -28.39 8.41 25.60 0.22 -28.18 16 10 H 0.08 3.78 7.06 -2.91 -0.02 3.76 16 11 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 12 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 13 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 14 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 17 N -0.33 -15.05 12.18 -49.55 -0.60 -15.66 16 18 N -0.35 -14.39 11.63 -58.00 -0.67 -15.07 16 19 C 0.34 10.98 6.75 260.11 1.76 12.73 16 20 N -0.44 -10.81 4.72 -705.06 -3.33 -14.13 16 21 C 0.03 0.68 5.33 86.31 0.46 1.14 16 22 C 0.07 1.19 7.01 72.02 0.50 1.70 16 23 O -0.39 -8.26 10.43 -144.47 -1.51 -9.77 16 24 C 0.11 2.02 3.09 30.63 0.09 2.11 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 C 0.07 1.18 5.61 71.98 0.40 1.58 16 27 O -0.40 -7.69 10.67 -144.47 -1.54 -9.23 16 28 C 0.02 0.31 11.01 113.37 1.25 1.56 16 29 C 0.04 0.78 4.87 86.31 0.42 1.20 16 30 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.06 1.19 6.91 -2.39 -0.02 1.18 16 32 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.12 1.99 8.11 -2.39 -0.02 1.97 16 34 H 0.11 2.02 7.47 -2.39 -0.02 2.01 16 35 H 0.08 2.76 6.95 -2.39 -0.02 2.75 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 40 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.05 1.24 7.96 -2.39 -0.02 1.22 16 42 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.10 2.00 6.90 -2.39 -0.02 1.99 16 51 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -76.98 410.57 2.62 -74.36 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.90 Total: 14.88 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 8.52 Total: 2.93 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -5.77 Total: -118.13 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -3.05 Total: -19.00 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -76.98 2.62 -74.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646717992.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.589 kcal (2) G-P(sol) polarization free energy of solvation -76.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds