Wall clock time and date at job start Tue Mar 31 2020 20:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99871 * 2 1 4 4 C 1.52996 * 109.47298 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47667 * 178.89298 * 4 3 2 6 6 C 1.36743 * 127.13338 * 84.00379 * 5 4 3 7 7 C 1.50694 * 126.35025 * 0.02562 * 6 5 4 8 8 C 1.52995 * 109.47502 * 89.99284 * 7 6 5 9 9 C 1.53788 * 113.61585 * 175.00395 * 8 7 6 10 10 C 1.53780 * 87.08104 * 140.06719 * 9 8 7 11 11 O 1.42899 * 113.61659 * 89.11561 * 10 9 8 12 12 C 1.53786 * 87.08330 * 334.56415 * 10 9 8 13 13 N 1.30295 * 107.29952 * 180.26530 * 6 5 4 14 14 N 1.28517 * 110.05792 * 359.56901 * 13 6 5 15 15 C 1.31218 * 109.86285 * 0.44357 * 14 13 6 16 16 N 1.38580 * 126.48117 * 179.73103 * 15 14 13 17 17 C 1.46903 * 111.00092 * 246.91969 * 16 15 14 18 18 C 1.46903 * 110.99390 * 10.87013 * 16 15 14 19 19 H 1.08999 * 109.47464 * 55.00150 * 18 16 15 20 20 C 1.53002 * 109.47222 * 294.99958 * 18 16 15 21 21 C 1.50703 * 109.46994 * 174.99900 * 18 16 15 22 22 H 1.08005 * 119.99643 * 0.02562 * 21 18 16 23 23 C 1.37871 * 120.00257 * 179.97438 * 21 18 16 24 24 N 1.31523 * 119.99818 * 0.02562 * 23 21 18 25 25 Si 1.86798 * 120.00240 * 180.02562 * 23 21 18 26 26 H 1.48491 * 109.47353 * 59.99881 * 25 23 21 27 27 H 1.48502 * 109.47150 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46824 * 299.99850 * 25 23 21 29 29 H 1.09002 * 109.47424 * 300.00146 * 1 2 3 30 30 H 1.08998 * 109.47484 * 59.99807 * 1 2 3 31 31 H 1.08999 * 109.47034 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47292 * 59.99915 * 3 2 1 33 33 H 1.09003 * 109.47391 * 300.00291 * 3 2 1 34 34 H 1.08999 * 109.47177 * 58.88989 * 4 3 2 35 35 H 1.09006 * 109.47008 * 298.89286 * 4 3 2 36 36 H 1.09009 * 109.47203 * 329.99269 * 7 6 5 37 37 H 1.08997 * 109.47485 * 209.99768 * 7 6 5 38 38 H 1.08997 * 112.84996 * 43.80506 * 8 7 6 39 39 H 1.09001 * 113.61504 * 25.51394 * 9 8 7 40 40 H 1.09005 * 113.60913 * 254.61279 * 9 8 7 41 41 H 1.09010 * 113.60983 * 219.93583 * 10 9 8 42 42 H 0.96704 * 113.99780 * 179.97438 * 11 10 9 43 43 H 1.08993 * 113.61499 * 139.98258 * 12 10 9 44 44 H 1.09002 * 113.61174 * 270.89079 * 12 10 9 45 45 H 1.09000 * 109.46911 * 53.10008 * 17 16 15 46 46 H 1.08993 * 109.46716 * 173.09794 * 17 16 15 47 47 H 1.08997 * 109.46624 * 293.09917 * 17 16 15 48 48 H 1.09001 * 109.47178 * 299.99904 * 20 18 16 49 49 H 1.08995 * 109.47037 * 60.00096 * 20 18 16 50 50 H 1.09004 * 109.47152 * 180.02562 * 20 18 16 51 51 H 0.96995 * 119.99690 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1313 2.5228 -0.0273 6 6 4.3651 3.3438 1.0409 7 6 4.0562 3.0411 2.4845 8 6 5.2627 2.3583 3.1319 9 6 5.0964 2.1154 4.6414 10 6 5.7747 0.7536 4.4171 11 8 7.1985 0.7976 4.5307 12 6 5.2698 0.8294 2.9665 13 7 4.8997 4.4384 0.5787 14 7 5.0269 4.3618 -0.6979 15 6 4.5679 3.2085 -1.1233 16 7 4.5330 2.7697 -2.4373 17 6 3.1492 2.6489 -2.9154 18 6 5.3157 3.6559 -3.3091 19 1 6.3310 3.7424 -2.9220 20 6 4.6644 5.0398 -3.3465 21 6 5.3566 3.0821 -4.7021 22 1 4.8512 2.1524 -4.9181 23 6 6.0381 3.7445 -5.7008 24 7 6.6531 4.8770 -5.4378 25 14 6.0882 3.0337 -7.4275 26 1 4.7050 2.9157 -7.9546 27 1 6.8795 3.9294 -8.3088 28 1 6.7205 1.6905 -7.3917 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8465 -0.8900 34 1 3.8553 0.6269 -0.8807 35 1 3.8588 0.6609 0.8989 36 1 3.1914 2.3798 2.5401 37 1 3.8380 3.9697 3.0119 38 1 6.2087 2.8305 2.8672 39 1 4.0567 2.0384 4.9593 40 1 5.6800 2.7972 5.2601 41 1 5.3288 -0.0565 4.9943 42 1 7.6307 -0.0561 4.3911 43 1 5.9931 0.4729 2.2333 44 1 4.2774 0.4007 2.8267 45 1 2.6226 3.5878 -2.7448 46 1 3.1517 2.4222 -3.9815 47 1 2.6467 1.8469 -2.3746 48 1 3.6492 4.9533 -3.7338 49 1 4.6349 5.4548 -2.3391 50 1 5.2450 5.6973 -3.9938 51 1 7.1329 5.3428 -6.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646789660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:02 Heat of formation + Delta-G solvation = 28.618914 kcal Electronic energy + Delta-G solvation = -31228.427420 eV Core-core repulsion = 27166.310400 eV Total energy + Delta-G solvation = -4062.117020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56236 -39.67597 -38.30748 -37.31845 -35.51332 -34.87807 -32.83918 -31.37798 -29.93299 -28.72806 -27.89050 -26.60751 -26.01702 -25.17582 -25.11689 -23.76495 -23.05987 -21.67268 -20.26224 -19.82538 -19.41917 -17.36553 -17.27411 -16.51600 -16.31045 -16.07854 -15.81766 -15.56934 -15.47681 -15.03242 -14.87535 -14.57218 -14.35764 -13.89412 -13.52594 -13.46092 -13.24193 -12.89400 -12.60279 -12.54076 -12.34211 -12.03891 -11.80593 -11.71837 -11.53784 -11.39690 -11.30908 -11.14806 -10.97096 -10.89226 -10.76736 -10.42507 -10.38856 -10.20631 -10.07115 -10.01069 -9.94039 -9.80773 -9.65027 -8.87850 -8.81222 -8.39160 -7.40655 -6.02335 -4.09927 2.16622 2.47417 3.30465 3.35726 3.36961 3.39424 3.57946 3.79141 4.18702 4.34931 4.39406 4.46086 4.54082 4.62493 4.66208 4.68876 4.86583 4.92725 5.02517 5.04786 5.08521 5.24156 5.28532 5.29441 5.35609 5.37836 5.42016 5.49692 5.57923 5.62213 5.70331 5.78998 5.86581 5.97814 6.03725 6.16898 6.28176 6.36895 6.49734 6.72440 6.84150 7.00888 7.15503 7.30751 7.37729 7.49644 7.67192 7.75040 7.98073 8.31218 8.47144 8.91409 9.36865 9.54520 11.03796 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.003342 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.238753 B = 8375.517037 C = 9609.216177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.043 3.957 4 C 0.112 3.888 5 N -0.481 5.481 6 C 0.154 3.846 7 C -0.016 4.016 8 C -0.096 4.096 9 C -0.128 4.128 10 C 0.080 3.920 11 O -0.550 6.550 12 C -0.173 4.173 13 N -0.285 5.285 14 N -0.312 5.312 15 C 0.385 3.615 16 N -0.455 5.455 17 C 0.032 3.968 18 C 0.230 3.770 19 H 0.050 0.950 20 C -0.176 4.176 21 C -0.516 4.516 22 H 0.063 0.937 23 C 0.064 3.936 24 N -0.884 5.884 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.381 0.619 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.030 0.970 46 H 0.098 0.902 47 H 0.049 0.951 48 H 0.019 0.981 49 H 0.049 0.951 50 H 0.089 0.911 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.818 -11.199 18.440 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.034 4.034 4 C -0.012 4.012 5 N -0.179 5.179 6 C -0.113 4.113 7 C -0.055 4.055 8 C -0.115 4.115 9 C -0.165 4.165 10 C 0.020 3.980 11 O -0.356 6.356 12 C -0.211 4.211 13 N -0.124 5.124 14 N -0.155 5.155 15 C 0.029 3.971 16 N -0.179 5.179 17 C -0.116 4.116 18 C 0.126 3.874 19 H 0.068 0.932 20 C -0.236 4.236 21 C -0.554 4.554 22 H 0.081 0.919 23 C -0.138 4.138 24 N -0.521 5.521 25 Si 0.727 3.273 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.228 0.772 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.048 0.952 46 H 0.116 0.884 47 H 0.068 0.932 48 H 0.038 0.962 49 H 0.067 0.933 50 H 0.107 0.893 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.883 -9.669 18.361 22.984 hybrid contribution -0.938 -1.383 -1.255 2.089 sum -10.821 -11.051 17.106 23.062 Atomic orbital electron populations 1.22779 0.80279 1.03008 1.00294 1.87808 1.20260 1.26769 1.95532 1.22942 0.93437 0.85487 1.01578 1.21518 0.91549 0.81797 1.06320 1.46011 1.49451 1.15654 1.06815 1.24413 1.05662 0.89728 0.91521 1.19936 0.97645 1.02164 0.85791 1.22501 0.99137 0.95024 0.94863 1.23093 1.00509 0.96197 0.96703 1.22652 0.81582 0.98178 0.95563 1.86485 1.18178 1.36827 1.94090 1.23817 1.02000 0.97097 0.98189 1.73974 1.15644 1.18865 1.03898 1.74905 1.24374 1.13667 1.02585 1.23284 0.97248 0.87640 0.88889 1.59310 1.13098 1.49938 0.95521 1.22497 0.86778 0.99097 1.03178 1.19360 0.91917 0.86655 0.89498 0.93184 1.22506 0.98890 1.01085 1.01086 1.20993 1.33963 1.07804 0.92671 0.91881 1.24889 0.95176 0.94849 0.98928 1.69917 1.33386 1.15511 1.33327 0.86545 0.78034 0.78918 0.83782 1.20312 1.21257 1.20203 0.93989 0.93693 0.89233 0.92761 0.91926 0.87184 0.88285 0.90619 0.88378 0.88068 0.88706 0.90263 0.91575 0.77205 0.90791 0.89347 0.95159 0.88374 0.93231 0.96212 0.93257 0.89285 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.09 10.70 -35.23 -0.38 -4.46 16 3 C 0.04 0.48 5.97 37.16 0.22 0.70 16 4 C 0.11 1.41 5.43 -4.04 -0.02 1.39 16 5 N -0.48 -7.82 2.81 -114.08 -0.32 -8.14 16 6 C 0.15 2.47 7.31 -154.01 -1.13 1.34 16 7 C -0.02 -0.17 5.38 -27.89 -0.15 -0.32 16 8 C -0.10 -1.00 3.57 -89.80 -0.32 -1.32 16 9 C -0.13 -1.04 7.47 -25.92 -0.19 -1.24 16 10 C 0.08 0.65 5.28 -25.92 -0.14 0.51 16 11 O -0.55 -5.27 13.59 -35.23 -0.48 -5.75 16 12 C -0.17 -1.54 6.34 -25.91 -0.16 -1.71 16 13 N -0.29 -5.84 12.18 32.99 0.40 -5.44 16 14 N -0.31 -7.19 9.03 30.31 0.27 -6.92 16 15 C 0.38 8.01 6.67 -318.87 -2.13 5.89 16 16 N -0.45 -9.93 4.74 -176.08 -0.83 -10.77 16 17 C 0.03 0.59 8.39 60.07 0.50 1.10 16 18 C 0.23 5.95 2.06 -68.86 -0.14 5.81 16 19 H 0.05 1.49 8.09 -51.93 -0.42 1.07 16 20 C -0.18 -4.53 8.28 37.16 0.31 -4.22 16 21 C -0.52 -13.88 7.78 -34.44 -0.27 -14.15 16 22 H 0.06 1.64 6.83 -52.48 -0.36 1.29 16 23 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 24 N -0.88 -25.39 11.32 55.43 0.63 -24.77 16 25 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.53 7.74 -51.93 -0.40 0.13 16 33 H 0.06 0.76 6.02 -51.93 -0.31 0.45 16 34 H 0.11 1.51 7.86 -51.93 -0.41 1.10 16 35 H 0.10 1.03 5.71 -51.93 -0.30 0.74 16 36 H 0.08 0.65 7.29 -51.92 -0.38 0.27 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.37 8.12 -51.93 -0.42 0.95 16 39 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 42 H 0.38 2.05 9.12 45.56 0.42 2.46 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.66 6.87 -51.93 -0.36 0.30 16 45 H 0.03 0.57 6.87 -51.93 -0.36 0.22 16 46 H 0.10 1.92 6.26 -51.93 -0.33 1.60 16 47 H 0.05 0.77 4.71 -51.93 -0.24 0.53 16 48 H 0.02 0.47 6.64 -51.93 -0.34 0.12 16 49 H 0.05 1.26 5.50 -51.93 -0.29 0.97 16 50 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 51 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 394.56 15.07 5.95 5.95 Total: -1.00 -33.57 394.56 -9.71 -43.28 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.33 Total: 4.21 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -2.60 Total: -3.20 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.15 Total: -56.03 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.86 Total: -10.21 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.57 -9.71 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646789660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.900 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds