Wall clock time and date at job start Tue Mar 31 2020 20:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99871 * 2 1 4 4 C 1.52996 * 109.47298 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47667 * 178.89298 * 4 3 2 6 6 C 1.36743 * 127.13338 * 84.00379 * 5 4 3 7 7 C 1.50694 * 126.35025 * 0.02562 * 6 5 4 8 8 C 1.52995 * 109.47502 * 89.99284 * 7 6 5 9 9 C 1.53788 * 113.61585 * 175.00395 * 8 7 6 10 10 C 1.53780 * 87.08104 * 140.06719 * 9 8 7 11 11 O 1.42899 * 113.61659 * 89.11561 * 10 9 8 12 12 C 1.53786 * 87.08330 * 334.56415 * 10 9 8 13 13 N 1.30295 * 107.29952 * 180.26530 * 6 5 4 14 14 N 1.28517 * 110.05792 * 359.56901 * 13 6 5 15 15 C 1.31218 * 109.86285 * 0.44357 * 14 13 6 16 16 N 1.38580 * 126.48117 * 179.73103 * 15 14 13 17 17 C 1.46903 * 111.00092 * 246.91969 * 16 15 14 18 18 C 1.46903 * 110.99390 * 10.87013 * 16 15 14 19 19 H 1.08999 * 109.47464 * 55.00150 * 18 16 15 20 20 C 1.53002 * 109.47222 * 294.99958 * 18 16 15 21 21 C 1.50703 * 109.46994 * 174.99900 * 18 16 15 22 22 H 1.08005 * 119.99643 * 0.02562 * 21 18 16 23 23 C 1.37871 * 120.00257 * 179.97438 * 21 18 16 24 24 N 1.31523 * 119.99818 * 0.02562 * 23 21 18 25 25 Si 1.86798 * 120.00240 * 180.02562 * 23 21 18 26 26 H 1.48491 * 109.47353 * 59.99881 * 25 23 21 27 27 H 1.48502 * 109.47150 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46824 * 299.99850 * 25 23 21 29 29 H 1.09002 * 109.47424 * 300.00146 * 1 2 3 30 30 H 1.08998 * 109.47484 * 59.99807 * 1 2 3 31 31 H 1.08999 * 109.47034 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47292 * 59.99915 * 3 2 1 33 33 H 1.09003 * 109.47391 * 300.00291 * 3 2 1 34 34 H 1.08999 * 109.47177 * 58.88989 * 4 3 2 35 35 H 1.09006 * 109.47008 * 298.89286 * 4 3 2 36 36 H 1.09009 * 109.47203 * 329.99269 * 7 6 5 37 37 H 1.08997 * 109.47485 * 209.99768 * 7 6 5 38 38 H 1.08997 * 112.84996 * 43.80506 * 8 7 6 39 39 H 1.09001 * 113.61504 * 25.51394 * 9 8 7 40 40 H 1.09005 * 113.60913 * 254.61279 * 9 8 7 41 41 H 1.09010 * 113.60983 * 219.93583 * 10 9 8 42 42 H 0.96704 * 113.99780 * 179.97438 * 11 10 9 43 43 H 1.08993 * 113.61499 * 139.98258 * 12 10 9 44 44 H 1.09002 * 113.61174 * 270.89079 * 12 10 9 45 45 H 1.09000 * 109.46911 * 53.10008 * 17 16 15 46 46 H 1.08993 * 109.46716 * 173.09794 * 17 16 15 47 47 H 1.08997 * 109.46624 * 293.09917 * 17 16 15 48 48 H 1.09001 * 109.47178 * 299.99904 * 20 18 16 49 49 H 1.08995 * 109.47037 * 60.00096 * 20 18 16 50 50 H 1.09004 * 109.47152 * 180.02562 * 20 18 16 51 51 H 0.96995 * 119.99690 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1313 2.5228 -0.0273 6 6 4.3651 3.3438 1.0409 7 6 4.0562 3.0411 2.4845 8 6 5.2627 2.3583 3.1319 9 6 5.0964 2.1154 4.6414 10 6 5.7747 0.7536 4.4171 11 8 7.1985 0.7976 4.5307 12 6 5.2698 0.8294 2.9665 13 7 4.8997 4.4384 0.5787 14 7 5.0269 4.3618 -0.6979 15 6 4.5679 3.2085 -1.1233 16 7 4.5330 2.7697 -2.4373 17 6 3.1492 2.6489 -2.9154 18 6 5.3157 3.6559 -3.3091 19 1 6.3310 3.7424 -2.9220 20 6 4.6644 5.0398 -3.3465 21 6 5.3566 3.0821 -4.7021 22 1 4.8512 2.1524 -4.9181 23 6 6.0381 3.7445 -5.7008 24 7 6.6531 4.8770 -5.4378 25 14 6.0882 3.0337 -7.4275 26 1 4.7050 2.9157 -7.9546 27 1 6.8795 3.9294 -8.3088 28 1 6.7205 1.6905 -7.3917 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8465 -0.8900 34 1 3.8553 0.6269 -0.8807 35 1 3.8588 0.6609 0.8989 36 1 3.1914 2.3798 2.5401 37 1 3.8380 3.9697 3.0119 38 1 6.2087 2.8305 2.8672 39 1 4.0567 2.0384 4.9593 40 1 5.6800 2.7972 5.2601 41 1 5.3288 -0.0565 4.9943 42 1 7.6307 -0.0561 4.3911 43 1 5.9931 0.4729 2.2333 44 1 4.2774 0.4007 2.8267 45 1 2.6226 3.5878 -2.7448 46 1 3.1517 2.4222 -3.9815 47 1 2.6467 1.8469 -2.3746 48 1 3.6492 4.9533 -3.7338 49 1 4.6349 5.4548 -2.3391 50 1 5.2450 5.6973 -3.9938 51 1 7.1329 5.3428 -6.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646789660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:01 Heat of formation + Delta-G solvation = 5.512893 kcal Electronic energy + Delta-G solvation = -31229.429373 eV Core-core repulsion = 27166.310400 eV Total energy + Delta-G solvation = -4063.118972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.01598 -40.39722 -39.17879 -38.99484 -36.45989 -35.95629 -34.80232 -32.57097 -31.09824 -30.59062 -29.18656 -27.33929 -27.22507 -26.76076 -26.60809 -24.77196 -24.01263 -23.34643 -21.49316 -21.15134 -20.51807 -18.59572 -18.11827 -17.94502 -17.56730 -17.21110 -17.12594 -16.80224 -16.55727 -16.25281 -15.96710 -15.75674 -15.52317 -15.26850 -14.92564 -14.54434 -14.33158 -14.21467 -13.75865 -13.52532 -13.36821 -13.23045 -13.15186 -12.96450 -12.84913 -12.69390 -12.63901 -12.61161 -12.35460 -12.24970 -12.10603 -12.02467 -11.98548 -11.70563 -11.41726 -11.15623 -11.06389 -10.86934 -10.73259 -10.64912 -10.50136 -10.38114 -9.08053 -8.12395 -6.28101 0.79392 1.19091 1.44436 1.46997 1.54661 1.88318 2.40065 2.65952 3.08701 3.16947 3.23806 3.32183 3.52103 3.67457 3.75148 3.78947 3.86204 3.97947 4.06275 4.10772 4.16664 4.29535 4.35514 4.45189 4.51166 4.55264 4.57444 4.59869 4.67769 4.68418 4.80355 4.86229 4.87703 4.88865 4.92856 4.97764 5.01678 5.11607 5.14970 5.25868 5.28721 5.43561 5.48810 5.61021 5.62279 5.84234 6.00570 6.07401 6.21576 6.58364 6.81042 6.91453 7.40790 7.86578 8.93963 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.003342 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.238753 B = 8375.517037 C = 9609.216177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.052 3.948 4 C 0.107 3.893 5 N -0.470 5.470 6 C 0.185 3.815 7 C -0.013 4.013 8 C -0.104 4.104 9 C -0.118 4.118 10 C 0.079 3.921 11 O -0.578 6.578 12 C -0.169 4.169 13 N -0.334 5.334 14 N -0.360 5.360 15 C 0.365 3.635 16 N -0.458 5.458 17 C 0.038 3.962 18 C 0.242 3.758 19 H -0.001 1.001 20 C -0.158 4.158 21 C -0.526 4.526 22 H 0.071 0.929 23 C 0.013 3.987 24 N -0.919 5.919 25 Si 0.970 3.030 26 H -0.264 1.264 27 H -0.287 1.287 28 H -0.270 1.270 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.396 0.604 43 H 0.053 0.947 44 H 0.115 0.885 45 H 0.023 0.977 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.027 0.973 49 H 0.046 0.954 50 H 0.060 0.940 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.588 -14.066 20.075 28.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.025 4.025 4 C -0.015 4.015 5 N -0.167 5.167 6 C -0.084 4.084 7 C -0.052 4.052 8 C -0.124 4.124 9 C -0.155 4.155 10 C 0.020 3.980 11 O -0.387 6.387 12 C -0.207 4.207 13 N -0.172 5.172 14 N -0.203 5.203 15 C 0.007 3.993 16 N -0.181 5.181 17 C -0.109 4.109 18 C 0.137 3.863 19 H 0.016 0.984 20 C -0.217 4.217 21 C -0.565 4.565 22 H 0.090 0.910 23 C -0.187 4.187 24 N -0.558 5.558 25 Si 0.794 3.206 26 H -0.189 1.189 27 H -0.213 1.213 28 H -0.195 1.195 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.147 0.853 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.246 0.754 43 H 0.071 0.929 44 H 0.133 0.867 45 H 0.042 0.958 46 H 0.107 0.893 47 H 0.103 0.897 48 H 0.046 0.954 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.679 -12.573 20.020 26.826 hybrid contribution -0.088 -0.543 -1.602 1.694 sum -12.767 -13.116 18.418 25.966 Atomic orbital electron populations 1.23006 0.78602 1.04400 1.01056 1.87791 1.21997 1.26109 1.95641 1.22756 0.91871 0.86026 1.01897 1.21801 0.92941 0.79616 1.07180 1.46108 1.48728 1.16605 1.05301 1.25427 1.01757 0.87953 0.93245 1.20286 0.99178 1.03760 0.82007 1.22402 0.96886 0.95925 0.97189 1.23152 1.02358 0.95894 0.94093 1.22786 0.80963 0.99051 0.95174 1.86449 1.19491 1.38594 1.94139 1.23863 1.02933 0.95444 0.98443 1.73876 1.18614 1.21593 1.03095 1.74730 1.25681 1.15703 1.04229 1.23111 0.98639 0.88232 0.89272 1.59175 1.14354 1.48823 0.95768 1.22523 0.85306 0.99999 1.03055 1.18914 0.90126 0.87442 0.89861 0.98352 1.22279 0.98588 1.00698 1.00155 1.21291 1.33946 1.08070 0.93157 0.91047 1.25795 0.94637 0.95062 1.03196 1.70088 1.34183 1.16936 1.34556 0.85437 0.78558 0.78087 0.78491 1.18885 1.21310 1.19524 0.92386 0.93793 0.87618 0.90755 0.93346 0.88376 0.85552 0.86684 0.87331 0.92352 0.85307 0.91477 0.88540 0.75436 0.92851 0.86685 0.95822 0.89253 0.89733 0.95431 0.93582 0.92140 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.93 10.70 -148.98 -1.59 -8.53 16 3 C 0.05 0.97 5.97 71.98 0.43 1.40 16 4 C 0.11 2.43 5.43 86.38 0.47 2.89 16 5 N -0.47 -14.95 2.81 -514.85 -1.45 -16.40 16 6 C 0.18 5.81 7.31 137.64 1.01 6.81 16 7 C -0.01 -0.25 5.38 29.84 0.16 -0.09 16 8 C -0.10 -2.00 3.57 -10.26 -0.04 -2.04 16 9 C -0.12 -1.56 7.47 31.12 0.23 -1.33 16 10 C 0.08 1.05 5.28 31.12 0.16 1.21 16 11 O -0.58 -10.36 13.59 -148.98 -2.02 -12.39 16 12 C -0.17 -2.53 6.34 31.13 0.20 -2.34 16 13 N -0.33 -14.15 12.18 -49.54 -0.60 -14.76 16 14 N -0.36 -17.49 9.03 -58.00 -0.52 -18.01 16 15 C 0.36 15.62 6.67 260.11 1.74 17.36 16 16 N -0.46 -20.54 4.74 -710.99 -3.37 -23.91 16 17 C 0.04 1.41 8.39 127.69 1.07 2.48 16 18 C 0.24 13.18 2.06 44.17 0.09 13.27 16 19 H 0.00 -0.10 8.09 -2.39 -0.02 -0.11 16 20 C -0.16 -8.54 8.28 71.98 0.60 -7.94 16 21 C -0.53 -29.01 7.78 25.60 0.20 -28.81 16 22 H 0.07 3.73 6.83 -2.91 -0.02 3.71 16 23 C 0.01 0.70 5.30 84.65 0.45 1.15 16 24 N -0.92 -54.88 11.32 21.45 0.24 -54.63 16 25 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 27 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 28 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.11 7.74 -2.39 -0.02 1.09 16 33 H 0.05 1.05 6.02 -2.39 -0.01 1.03 16 34 H 0.10 2.53 7.86 -2.39 -0.02 2.51 16 35 H 0.13 2.17 5.71 -2.38 -0.01 2.15 16 36 H 0.11 1.34 7.29 -2.38 -0.02 1.32 16 37 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 39 H 0.13 0.85 8.10 -2.39 -0.02 0.84 16 40 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.40 3.79 9.12 -74.05 -0.68 3.12 16 43 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.12 1.11 6.87 -2.39 -0.02 1.09 16 45 H 0.02 0.89 6.87 -2.39 -0.02 0.88 16 46 H 0.09 3.48 6.26 -2.39 -0.01 3.46 16 47 H 0.08 2.52 4.71 -2.39 -0.01 2.51 16 48 H 0.03 1.38 6.64 -2.39 -0.02 1.36 16 49 H 0.05 2.50 5.50 -2.39 -0.01 2.48 16 50 H 0.06 3.60 6.07 -2.38 -0.01 3.58 16 51 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -78.90 394.56 1.00 -77.90 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.28 Total: 19.64 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 8.01 Total: 5.58 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -5.70 Total: -127.71 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -3.62 Total: -20.92 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -78.90 1.00 -77.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646789660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.416 kcal (2) G-P(sol) polarization free energy of solvation -78.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds