Wall clock time and date at job start Tue Mar 31 2020 21:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47332 * 2 1 4 4 C 1.38573 * 111.00152 * 296.74361 * 3 2 1 5 5 N 1.31222 * 126.46881 * 306.51093 * 4 3 2 6 6 N 1.28530 * 109.85788 * 179.82249 * 5 4 3 7 7 C 1.30293 * 110.05370 * 0.45249 * 6 5 4 8 8 C 1.50703 * 126.34572 * 179.76500 * 7 6 5 9 9 C 1.53004 * 109.47090 * 275.44003 * 8 7 6 10 10 H 1.09000 * 109.46608 * 54.32927 * 9 8 7 11 11 O 1.42894 * 109.47283 * 294.33075 * 9 8 7 12 12 C 1.50705 * 109.47005 * 174.32827 * 9 8 7 13 13 H 1.07993 * 119.99996 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99607 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00398 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99902 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46724 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47052 * 119.99839 * 16 14 12 19 19 H 1.48494 * 109.47135 * 240.00089 * 16 14 12 20 20 N 1.36453 * 126.47642 * 126.81972 * 4 3 2 21 21 C 1.46498 * 127.13450 * 359.97438 * 20 4 3 22 22 C 1.53002 * 109.46703 * 265.11034 * 21 20 4 23 23 C 1.46901 * 111.00108 * 172.78775 * 3 2 1 24 24 H 1.08999 * 109.52045 * 179.08041 * 23 3 2 25 25 C 1.53176 * 109.52274 * 299.26606 * 23 3 2 26 26 C 1.53176 * 109.03686 * 176.88774 * 25 23 3 27 27 C 1.53095 * 109.16523 * 303.02019 * 26 25 23 28 28 O 1.42911 * 109.41057 * 57.60475 * 27 26 25 29 29 C 1.42899 * 114.09925 * 298.84524 * 28 27 26 30 30 H 1.08997 * 109.47270 * 55.37367 * 1 2 3 31 31 H 1.09009 * 109.47143 * 295.37228 * 1 2 3 32 32 H 1.09003 * 109.47341 * 175.37756 * 1 2 3 33 33 H 1.09005 * 109.47605 * 120.00423 * 2 1 3 34 34 H 1.09001 * 109.47219 * 240.00244 * 2 1 3 35 35 H 1.08997 * 109.47764 * 35.44506 * 8 7 6 36 36 H 1.09004 * 109.47012 * 155.44659 * 8 7 6 37 37 H 0.96703 * 113.99830 * 304.42598 * 11 9 8 38 38 H 0.96992 * 120.00294 * 180.02562 * 15 14 12 39 39 H 1.08991 * 109.47467 * 25.11164 * 21 20 4 40 40 H 1.09003 * 109.47211 * 145.11619 * 21 20 4 41 41 H 1.09000 * 109.47006 * 185.04148 * 22 21 20 42 42 H 1.09001 * 109.47387 * 305.04450 * 22 21 20 43 43 H 1.09005 * 109.46972 * 65.04592 * 22 21 20 44 44 H 1.09001 * 109.54958 * 296.75584 * 25 23 3 45 45 H 1.09002 * 109.54334 * 57.02311 * 25 23 3 46 46 H 1.09005 * 109.52229 * 183.11899 * 26 25 23 47 47 H 1.08993 * 109.57673 * 62.96137 * 26 25 23 48 48 H 1.09005 * 109.47948 * 297.63249 * 27 26 25 49 49 H 1.08993 * 109.49223 * 177.59618 * 27 26 25 50 50 H 1.08994 * 109.48210 * 301.17358 * 29 28 27 51 51 H 1.09004 * 109.48339 * 181.14390 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6364 2.0472 -1.1553 5 7 1.8439 1.6487 -2.3882 6 7 1.3526 2.5041 -3.2121 7 6 0.8155 3.4956 -2.5594 8 6 0.1404 4.7005 -3.1624 9 6 1.1938 5.7536 -3.5119 10 1 1.9566 5.3068 -4.1495 11 8 1.7998 6.2378 -2.3119 12 6 0.5374 6.8981 -4.2404 13 1 -0.5246 6.8762 -4.4350 14 6 1.2931 7.9725 -4.6594 15 7 2.5866 7.9989 -4.4229 16 14 0.4796 9.3914 -5.5618 17 1 -0.9741 9.1212 -5.7006 18 1 0.6792 10.6463 -4.7932 19 1 1.0869 9.5343 -6.9093 20 7 0.9771 3.2399 -1.2259 21 6 0.5339 4.0731 -0.1054 22 6 -0.9250 3.7505 0.2241 23 6 3.4779 1.4277 0.1722 24 1 3.8168 2.4635 0.1523 25 6 3.8539 0.7905 1.5134 26 6 5.3797 0.7705 1.6467 27 6 5.9784 0.0158 0.4568 28 8 5.5646 0.6419 -0.7594 29 6 4.1499 0.6477 -0.9608 30 1 -0.3633 0.5839 -0.8456 31 1 -0.3634 0.4404 0.9286 32 1 -0.3634 -1.0243 -0.0828 33 1 1.8934 -0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 -0.3916 4.4045 -4.0665 36 1 -0.5665 5.1178 -2.4451 37 1 1.1702 6.5881 -1.6669 38 1 3.1181 8.7549 -4.7173 39 1 1.1565 3.8711 0.7661 40 1 0.6207 5.1248 -0.3781 41 1 -1.2820 4.4313 0.9969 42 1 -1.5342 3.8665 -0.6722 43 1 -0.9980 2.7236 0.5826 44 1 3.4244 1.3741 2.3276 45 1 3.4711 -0.2293 1.5526 46 1 5.6578 0.2686 2.5735 47 1 5.7588 1.7923 1.6580 48 1 5.6315 -1.0175 0.4700 49 1 7.0661 0.0351 0.5239 50 1 3.7792 -0.3772 -0.9661 51 1 3.9204 1.1224 -1.9148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650308459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:58 Heat of formation + Delta-G solvation = -12.160924 kcal Electronic energy + Delta-G solvation = -31805.812994 eV Core-core repulsion = 27741.927628 eV Total energy + Delta-G solvation = -4063.885366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.66968 -39.98236 -37.32330 -36.23239 -35.23256 -33.39188 -32.19316 -31.66882 -31.32263 -30.44599 -29.06592 -27.54461 -25.51762 -25.06373 -24.02025 -23.53588 -23.18747 -21.70051 -20.65536 -19.87428 -19.46598 -17.31585 -17.08450 -16.71444 -16.20065 -16.05373 -15.61197 -15.21882 -14.90908 -14.69796 -14.63428 -14.31293 -14.09177 -13.92647 -13.72935 -13.37289 -13.06280 -12.89598 -12.84707 -12.63486 -12.47190 -12.28246 -12.18053 -11.70406 -11.62048 -11.38721 -11.26040 -11.24993 -11.10587 -10.99529 -10.92033 -10.86920 -10.74380 -10.46494 -10.24917 -10.12271 -9.77993 -9.74016 -9.35261 -8.74821 -8.61294 -8.54347 -8.07329 -6.04351 -4.24131 2.10314 2.51800 3.24477 3.25392 3.34144 3.36797 3.59893 3.95405 4.35535 4.43823 4.57206 4.69366 4.71180 4.76054 4.84442 4.93751 5.01223 5.03256 5.04920 5.17612 5.22261 5.25565 5.33027 5.35681 5.44022 5.45640 5.48976 5.58383 5.60784 5.66258 5.68673 5.74283 5.78945 5.90885 5.94381 6.00740 6.05061 6.08839 6.14928 6.25545 6.35838 6.40551 6.60068 6.67310 6.91089 7.13255 7.50108 7.65507 7.78879 8.08626 8.76639 9.17943 9.24210 9.52065 10.99902 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.003269 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.340853 B = 8563.688636 C = 9447.607527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 N -0.450 5.450 4 C 0.323 3.677 5 N -0.315 5.315 6 N -0.298 5.298 7 C 0.224 3.776 8 C -0.065 4.065 9 C 0.238 3.762 10 H 0.065 0.935 11 O -0.560 6.560 12 C -0.573 4.573 13 H 0.059 0.941 14 C 0.081 3.919 15 N -0.856 5.856 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.282 1.282 20 N -0.455 5.455 21 C 0.109 3.891 22 C -0.166 4.166 23 C 0.061 3.939 24 H 0.093 0.907 25 C -0.113 4.113 26 C -0.154 4.154 27 C 0.055 3.945 28 O -0.376 6.376 29 C 0.032 3.968 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.336 0.664 38 H 0.261 0.739 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.093 0.907 50 H 0.053 0.947 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 -15.180 16.658 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 N -0.177 5.177 4 C -0.033 4.033 5 N -0.159 5.159 6 N -0.138 5.138 7 C -0.043 4.043 8 C -0.105 4.105 9 C 0.179 3.821 10 H 0.083 0.917 11 O -0.363 6.363 12 C -0.611 4.611 13 H 0.077 0.923 14 C -0.126 4.126 15 N -0.491 5.491 16 Si 0.718 3.282 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.208 1.208 20 N -0.147 5.147 21 C -0.014 4.014 22 C -0.224 4.224 23 C -0.047 4.047 24 H 0.111 0.889 25 C -0.151 4.151 26 C -0.192 4.192 27 C -0.022 4.022 28 O -0.293 6.293 29 C -0.046 4.046 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.180 0.820 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.066 0.934 49 H 0.111 0.889 50 H 0.071 0.929 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.741 -15.817 15.453 22.125 hybrid contribution -1.194 1.358 0.472 1.869 sum -1.935 -14.459 15.925 21.596 Atomic orbital electron populations 1.21768 0.94539 1.01824 1.02281 1.22243 0.96292 0.86683 1.02120 1.58896 1.12242 1.16204 1.30323 1.22026 1.01337 0.88531 0.91400 1.74423 1.20442 1.23753 0.97320 1.74024 1.13816 1.00986 1.24991 1.25299 1.00827 0.99040 0.79171 1.21238 0.99360 0.89776 1.00112 1.19439 0.90123 0.88817 0.83712 0.91694 1.86705 1.37603 1.82446 1.29500 1.21590 0.95032 1.04758 1.39731 0.92250 1.25033 0.94618 0.98244 0.94668 1.70089 1.05219 1.30231 1.43549 0.86593 0.79733 0.82262 0.79648 1.19623 1.20922 1.20811 1.46263 1.43054 1.17392 1.08024 1.21802 0.96280 0.95441 0.87874 1.22149 0.95128 1.02609 1.02530 1.22405 0.84532 1.01852 0.95929 0.88883 1.21700 0.95661 1.01217 0.96494 1.22197 0.95489 1.02408 0.99147 1.22617 0.99899 0.95285 0.84402 1.88025 1.22089 1.79800 1.39410 1.23497 0.80800 0.99994 1.00342 0.92743 0.92102 0.91819 0.89480 0.92562 0.88551 0.91038 0.82006 0.92939 0.88667 0.88265 0.90549 0.91906 0.92005 0.90432 0.91287 0.90506 0.90704 0.93375 0.88894 0.92895 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.92 37.15 0.37 -1.13 16 2 C 0.05 0.57 4.77 -3.83 -0.02 0.55 16 3 N -0.45 -5.70 4.55 -166.80 -0.76 -6.46 16 4 C 0.32 5.25 4.87 -318.88 -1.55 3.70 16 5 N -0.32 -6.07 9.81 30.31 0.30 -5.77 16 6 N -0.30 -6.40 12.18 32.99 0.40 -6.00 16 7 C 0.22 4.35 7.11 -154.01 -1.09 3.26 16 8 C -0.06 -1.27 5.14 -27.88 -0.14 -1.41 16 9 C 0.24 5.83 2.81 -27.88 -0.08 5.75 16 10 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 11 O -0.56 -13.61 12.16 -35.23 -0.43 -14.03 16 12 C -0.57 -15.12 8.79 -34.44 -0.30 -15.42 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.08 2.22 5.40 -17.82 -0.10 2.13 16 15 N -0.86 -25.12 12.84 55.43 0.71 -24.40 16 16 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 N -0.46 -7.41 2.81 -114.09 -0.32 -7.73 16 21 C 0.11 1.38 6.48 -4.04 -0.03 1.35 16 22 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 23 C 0.06 0.76 2.40 -67.58 -0.16 0.60 16 24 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 25 C -0.11 -1.01 5.19 -26.55 -0.14 -1.15 16 26 C -0.15 -1.29 6.14 -26.59 -0.16 -1.45 16 27 C 0.05 0.53 6.84 37.21 0.25 0.79 16 28 O -0.38 -5.34 10.77 -35.23 -0.38 -5.71 16 29 C 0.03 0.45 5.35 37.20 0.20 0.65 16 30 H 0.05 0.71 7.17 -51.93 -0.37 0.34 16 31 H 0.06 0.56 8.12 -51.92 -0.42 0.14 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.73 5.92 -51.93 -0.31 0.42 16 34 H 0.06 0.68 6.42 -51.93 -0.33 0.35 16 35 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 36 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 37 H 0.34 6.89 7.78 45.56 0.35 7.25 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 40 H 0.10 1.29 6.35 -51.93 -0.33 0.96 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.70 8.05 -51.93 -0.42 0.29 16 43 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.54 6.13 -51.93 -0.32 0.22 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.05 0.67 6.42 -51.93 -0.33 0.34 16 51 H 0.11 2.03 6.10 -51.93 -0.32 1.71 16 LS Contribution 397.27 15.07 5.99 5.99 Total: -1.00 -32.96 397.27 -9.89 -42.85 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.81 Total: 8.67 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.57 Total: -3.11 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.33 Total: -50.36 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.81 Total: -19.75 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.96 -9.89 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650308459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.692 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds